Wall clock time and date at job start Tue Mar 31 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47106 * 2 1 4 4 C 1.53008 * 109.46831 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46704 * 179.68473 * 4 3 2 6 6 C 1.46908 * 110.99909 * 288.17214 * 5 4 3 7 7 C 1.50699 * 109.46756 * 160.36206 * 6 5 4 8 8 H 1.08001 * 120.00315 * 4.89239 * 7 6 5 9 9 C 1.37887 * 119.99614 * 184.89648 * 7 6 5 10 10 N 1.31511 * 119.99643 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00061 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47202 * 89.99954 * 11 9 7 13 13 H 1.48499 * 109.46904 * 210.00312 * 11 9 7 14 14 H 1.48506 * 109.47088 * 330.00131 * 11 9 7 15 15 C 1.46903 * 110.99921 * 164.22282 * 5 4 3 16 16 C 1.50696 * 109.46779 * 293.95237 * 15 5 4 17 17 C 1.38237 * 120.41374 * 270.04311 * 16 15 5 18 18 N 1.31845 * 120.79432 * 179.97438 * 17 16 15 19 19 C 1.31868 * 121.74008 * 0.02562 * 18 17 16 20 20 C 1.38309 * 120.74914 * 359.97438 * 19 18 17 21 21 Cl 1.73593 * 120.43345 * 180.02562 * 20 19 18 22 22 C 1.38601 * 120.41603 * 89.99989 * 16 15 5 23 23 H 1.09000 * 109.47614 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47075 * 299.99893 * 1 2 3 25 25 H 1.09001 * 109.47513 * 59.99735 * 1 2 3 26 26 H 1.08998 * 109.46647 * 239.99925 * 2 1 3 27 27 H 1.09008 * 109.47000 * 119.99861 * 2 1 3 28 28 H 1.08990 * 109.47367 * 60.00086 * 3 2 1 29 29 H 1.09001 * 109.46777 * 299.99606 * 3 2 1 30 30 H 1.09004 * 109.46862 * 59.68815 * 4 3 2 31 31 H 1.08997 * 109.46832 * 299.68624 * 4 3 2 32 32 H 1.09002 * 109.47073 * 280.35850 * 6 5 4 33 33 H 1.08999 * 109.47282 * 40.36360 * 6 5 4 34 34 H 0.97003 * 119.99617 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47215 * 173.95293 * 15 5 4 36 36 H 1.08998 * 109.47379 * 53.94911 * 15 5 4 37 37 H 1.08007 * 119.60092 * 359.97438 * 17 16 15 38 38 H 1.08007 * 119.62979 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.79422 * 0.03826 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0083 6 6 3.8313 3.4593 -1.3147 7 6 3.8832 4.9578 -1.1637 8 1 4.1452 5.3960 -0.2119 9 6 3.5960 5.7696 -2.2407 10 7 3.6407 7.0773 -2.1088 11 14 3.1434 5.0117 -3.8870 12 1 1.6725 4.8201 -3.9560 13 1 3.5771 5.9145 -4.9833 14 1 3.8210 3.6981 -4.0302 15 6 5.4796 2.8858 0.3637 16 6 5.6408 2.4564 1.7992 17 6 5.5757 3.3869 2.8195 18 7 5.7152 3.0195 4.0780 19 6 5.9213 1.7612 4.4146 20 6 5.9984 0.7744 3.4486 21 17 6.2694 -0.8796 3.9009 22 6 5.8554 1.1236 2.1131 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9329 0.9239 -0.8881 31 1 3.9337 0.9333 0.8919 32 1 4.6033 3.1377 -2.0138 33 1 2.8525 3.1660 -1.6940 34 1 3.4391 7.6483 -2.8665 35 1 5.8442 3.9063 0.2466 36 1 6.0520 2.2192 -0.2813 37 1 5.4085 4.4274 2.5828 38 1 6.0304 1.4982 5.4564 39 1 5.9108 0.3747 1.3368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136994464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:06 Heat of formation + Delta-G solvation = 17.443274 kcal Electronic energy + Delta-G solvation = -19893.374959 eV Core-core repulsion = 16861.340216 eV Total energy + Delta-G solvation = -3032.034742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29693 -37.50831 -36.69575 -34.56747 -32.99366 -32.12961 -31.28829 -29.05272 -27.65266 -25.23875 -23.68952 -22.79644 -22.00984 -20.88753 -19.85917 -17.14096 -16.97721 -16.57659 -15.82296 -15.47797 -14.80811 -14.49940 -14.19682 -14.04590 -13.51903 -13.28218 -13.19040 -12.77688 -12.61381 -12.41004 -12.14487 -12.05166 -11.74518 -11.59323 -11.25975 -11.07380 -10.91797 -10.69012 -10.59757 -10.41845 -10.07886 -9.97213 -9.65173 -9.47641 -9.33779 -8.81254 -8.60100 -7.51272 -6.09604 -4.06899 0.97279 1.15909 1.93488 3.24161 3.32344 3.33223 3.69360 4.37415 4.45258 4.62181 4.70290 4.82109 4.98482 5.13425 5.21302 5.21441 5.26447 5.33844 5.54598 5.56609 5.74882 5.85477 5.89027 5.92288 5.98662 6.03167 6.13286 6.21506 6.27806 6.31195 6.52746 6.60520 6.67873 6.75899 6.83134 7.55229 7.78528 7.89094 7.90763 8.59174 8.99049 9.52085 11.03446 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.005115 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.387448 B = 5472.921556 C = 6755.170638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.114 4.114 4 C 0.047 3.953 5 N -0.520 5.520 6 C 0.162 3.838 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.070 3.930 10 N -0.898 5.898 11 Si 0.871 3.129 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.100 3.900 16 C -0.098 4.098 17 C 0.126 3.874 18 N -0.470 5.470 19 C 0.102 3.898 20 C -0.092 4.092 21 Cl -0.067 7.067 22 C -0.068 4.068 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.063 0.937 32 H -0.011 1.011 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.036 0.964 37 H 0.169 0.831 38 H 0.159 0.841 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 -15.289 8.155 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.152 4.152 4 C -0.081 4.081 5 N -0.244 5.244 6 C 0.036 3.964 7 C -0.547 4.547 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.537 5.537 11 Si 0.699 3.301 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.029 4.029 16 C -0.101 4.101 17 C -0.031 4.031 18 N -0.178 5.178 19 C -0.056 4.056 20 C -0.120 4.120 21 Cl -0.039 7.039 22 C -0.095 4.095 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.007 0.993 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.054 0.946 37 H 0.186 0.814 38 H 0.176 0.824 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.126 -14.345 9.082 17.110 hybrid contribution 0.188 -1.597 -2.232 2.751 sum 2.314 -15.942 6.850 17.505 Atomic orbital electron populations 1.21752 0.96046 1.00979 1.02007 1.21500 0.95759 0.97449 1.01345 1.21587 0.94912 0.95509 1.03214 1.22217 0.95801 0.90669 0.99434 1.61998 1.14522 1.14614 1.33238 1.20243 0.95548 0.96084 0.84484 1.21006 1.46793 0.88077 0.98819 0.90065 1.24879 0.95142 0.94691 0.98450 1.69884 1.49497 1.02949 1.31355 0.86925 0.79272 0.79482 0.84447 1.20137 1.21180 1.19382 1.20973 0.90613 1.02825 0.88465 1.21081 0.97775 0.92569 0.98651 1.22969 0.92390 1.01071 0.86640 1.67886 1.11631 1.17380 1.20915 1.22710 0.96246 0.87360 0.99304 1.22041 1.07654 0.86818 0.95525 1.98362 1.94901 1.17827 1.92769 1.21477 0.96693 0.96688 0.94593 0.93245 0.92726 0.92717 0.92517 0.92470 0.91306 0.91510 0.95856 0.91844 0.99304 0.95265 0.92630 0.87806 0.94630 0.81358 0.82362 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.54 5.93 -26.73 -0.16 -1.69 16 3 C -0.11 -1.78 5.28 -26.73 -0.14 -1.92 16 4 C 0.05 0.76 4.80 -3.82 -0.02 0.74 16 5 N -0.52 -9.95 4.37 -237.51 -1.04 -10.99 16 6 C 0.16 3.67 3.66 -4.97 -0.02 3.66 16 7 C -0.51 -13.65 9.17 -34.44 -0.32 -13.97 16 8 H 0.08 2.36 7.90 -52.49 -0.41 1.94 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -26.67 13.96 55.43 0.77 -25.89 16 11 Si 0.87 20.80 27.37 -169.99 -4.65 16.15 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.18 6.69 56.52 0.38 -5.80 16 15 C 0.10 1.68 4.97 -4.98 -0.02 1.65 16 16 C -0.10 -1.45 4.94 -104.49 -0.52 -1.96 16 17 C 0.13 1.92 10.86 -17.55 -0.19 1.72 16 18 N -0.47 -6.94 10.36 -13.22 -0.14 -7.07 16 19 C 0.10 1.29 10.99 -17.51 -0.19 1.09 16 20 C -0.09 -1.12 6.34 -39.35 -0.25 -1.37 16 21 Cl -0.07 -0.71 28.99 -51.86 -1.50 -2.22 16 22 C -0.07 -0.88 7.82 -39.25 -0.31 -1.19 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 1.15 6.52 -51.93 -0.34 0.81 16 30 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 31 H 0.06 0.94 5.17 -51.93 -0.27 0.67 16 32 H -0.01 -0.25 7.40 -51.93 -0.38 -0.63 16 33 H 0.03 0.67 5.39 -51.93 -0.28 0.39 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 1.91 7.27 -51.93 -0.38 1.54 16 36 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 37 H 0.17 2.54 8.06 -52.48 -0.42 2.11 16 38 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.14 1.62 7.76 -52.49 -0.41 1.22 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -28.76 332.90 -9.25 -38.01 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.85 Total: -0.26 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.86 Total: -12.74 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.40 Total: -43.96 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.65 Total: 16.15 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.76 -9.25 -38.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136994464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.453 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds