Wall clock time and date at job start Tue Mar 31 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46876 * 2 1 4 4 C 1.52996 * 109.47114 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.47075 * 181.01941 * 4 3 2 6 6 C 1.46901 * 110.99773 * 299.36080 * 5 4 3 7 7 C 1.50703 * 109.47229 * 294.01417 * 6 5 4 8 8 H 1.08004 * 119.99892 * 355.06200 * 7 6 5 9 9 C 1.37881 * 119.99897 * 175.06808 * 7 6 5 10 10 N 1.31510 * 120.00164 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99740 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47631 * 89.99409 * 11 9 7 13 13 H 1.48506 * 109.47019 * 209.99749 * 11 9 7 14 14 H 1.48500 * 109.46980 * 329.99120 * 11 9 7 15 15 C 1.46897 * 111.00336 * 63.31337 * 5 4 3 16 16 C 1.50708 * 109.46769 * 66.04732 * 15 5 4 17 17 C 1.38714 * 120.40149 * 90.00137 * 16 15 5 18 18 C 1.38560 * 118.43479 * 180.02562 * 17 16 15 19 19 C 1.38399 * 119.15039 * 0.02562 * 18 17 16 20 20 Cl 1.73598 * 119.63381 * 179.97438 * 19 18 17 21 21 N 1.31941 * 120.72965 * 359.97438 * 19 18 17 22 22 C 1.31912 * 121.70946 * 0.04384 * 21 19 18 23 23 H 1.08993 * 109.46893 * 60.00462 * 1 2 3 24 24 H 1.09004 * 109.46682 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47304 * 299.99747 * 1 2 3 26 26 H 1.08998 * 109.47478 * 239.99769 * 2 1 3 27 27 H 1.09003 * 109.46814 * 119.99558 * 2 1 3 28 28 H 1.09002 * 109.46947 * 60.00034 * 3 2 1 29 29 H 1.08995 * 109.46726 * 300.00215 * 3 2 1 30 30 H 1.08997 * 109.47181 * 61.01858 * 4 3 2 31 31 H 1.09004 * 109.46829 * 301.01719 * 4 3 2 32 32 H 1.08991 * 109.47491 * 54.01628 * 6 5 4 33 33 H 1.09001 * 109.47225 * 174.01640 * 6 5 4 34 34 H 0.96998 * 120.00405 * 180.02562 * 10 9 7 35 35 H 1.08995 * 109.47524 * 306.05025 * 15 5 4 36 36 H 1.09000 * 109.47209 * 186.04710 * 15 5 4 37 37 H 1.08005 * 120.78080 * 359.97438 * 17 16 15 38 38 H 1.08000 * 120.42762 * 179.72056 * 18 17 16 39 39 H 1.08001 * 119.60989 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8274 0.0253 6 6 3.6015 3.5687 -1.1573 7 6 4.2359 2.9847 -2.3932 8 1 4.9722 2.1997 -2.3028 9 6 3.8766 3.4527 -3.6394 10 7 2.9798 4.4083 -3.7496 11 14 4.6625 2.7282 -5.1714 12 1 3.8544 1.5759 -5.6448 13 1 4.7196 3.7631 -6.2350 14 1 6.0385 2.2700 -4.8523 15 6 3.6538 3.5073 1.2626 16 6 4.3416 2.8629 2.4386 17 6 5.5773 3.3241 2.8681 18 6 6.1732 2.7013 3.9531 19 6 5.5203 1.6469 4.5674 20 17 6.2557 0.8572 5.9272 21 7 4.3452 1.2353 4.1309 22 6 3.7497 1.8049 3.1009 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9337 0.9446 -0.8981 31 1 3.9329 0.9132 0.8816 32 1 2.5169 3.4938 -1.2356 33 1 3.8873 4.6163 -1.0626 34 1 2.7267 4.7372 -4.6263 35 1 2.5737 3.4263 1.3844 36 1 3.9354 4.5589 1.2084 37 1 6.0639 4.1485 2.3682 38 1 7.1370 3.0313 4.3116 39 1 2.7879 1.4402 2.7718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137167129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:08 Heat of formation + Delta-G solvation = 16.065911 kcal Electronic energy + Delta-G solvation = -19965.458079 eV Core-core repulsion = 16933.363609 eV Total energy + Delta-G solvation = -3032.094469 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33569 -37.68153 -36.59900 -34.10268 -33.04639 -32.33572 -31.24571 -28.42639 -27.27473 -24.97625 -23.79148 -23.37342 -21.91813 -21.18638 -19.37447 -17.37757 -16.73415 -16.32884 -15.42534 -15.22363 -14.75243 -14.60359 -14.28685 -13.95478 -13.79022 -13.39054 -13.15376 -12.51833 -12.38897 -12.24660 -11.81706 -11.71696 -11.44641 -11.24617 -11.14212 -10.99367 -10.78320 -10.74539 -10.59473 -10.47938 -9.99352 -9.96582 -9.74687 -9.53358 -9.25966 -8.79539 -8.47509 -7.27592 -6.07589 -4.08646 0.94261 1.21621 1.79182 3.28528 3.35427 3.39373 3.64566 4.39134 4.46846 4.80161 4.88966 4.96793 5.04209 5.22791 5.28803 5.29485 5.30915 5.50366 5.52099 5.74011 5.81855 5.92499 5.95386 6.08818 6.10494 6.16037 6.24476 6.36029 6.41815 6.50929 6.55309 6.71578 6.89732 7.21344 7.34749 7.71406 7.74248 7.99745 8.09842 8.46325 8.99126 9.55875 11.02935 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.004331 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.954769 B = 6463.489232 C = 7361.185387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.158 4.158 4 C 0.062 3.938 5 N -0.529 5.529 6 C 0.189 3.811 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.086 3.914 16 C -0.104 4.104 17 C -0.046 4.046 18 C -0.155 4.155 19 C 0.163 3.837 20 Cl -0.045 7.045 21 N -0.480 5.480 22 C 0.120 3.880 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.006 0.994 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 -4.035 14.219 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.197 4.197 4 C -0.066 4.066 5 N -0.252 5.252 6 C 0.065 3.935 7 C -0.544 4.544 8 H 0.080 0.920 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.042 4.042 16 C -0.107 4.107 17 C -0.073 4.073 18 C -0.175 4.175 19 C -0.001 4.001 20 Cl -0.017 7.017 21 N -0.191 5.191 22 C -0.037 4.037 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.399 -4.682 14.601 15.397 hybrid contribution -0.069 0.278 -1.208 1.241 sum 1.330 -4.404 13.393 14.161 Atomic orbital electron populations 1.21767 0.96491 1.00855 1.01648 1.21433 0.95308 0.97397 1.01545 1.22268 0.98658 0.96482 1.02309 1.22092 0.91747 0.91165 1.01596 1.62434 1.59209 1.02164 1.01342 1.19817 0.94688 0.93291 0.85744 1.21108 1.23033 1.20340 0.89895 0.91954 1.24950 0.95218 0.95162 0.99075 1.69943 1.31952 1.27862 1.24026 0.86546 0.79830 0.78715 0.82641 1.20743 1.21288 1.19795 1.21040 0.96683 0.98139 0.88380 1.21115 0.95653 0.96614 0.97306 1.21542 0.93607 0.98673 0.93444 1.21806 1.01721 0.96514 0.97498 1.21544 0.92496 0.93707 0.92389 1.98383 1.80122 1.80674 1.42518 1.66962 1.08931 1.29566 1.13639 1.22604 0.99348 0.92021 0.89732 0.92686 0.93363 0.93216 0.91976 0.92724 0.93092 0.90224 0.89928 0.93042 0.97665 0.95656 0.92924 0.93762 0.90043 0.83553 0.84035 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.68 5.93 -26.73 -0.16 -1.84 16 3 C -0.16 -2.60 4.48 -26.73 -0.12 -2.72 16 4 C 0.06 1.12 4.80 -3.83 -0.02 1.10 16 5 N -0.53 -10.30 4.69 -237.52 -1.11 -11.41 16 6 C 0.19 4.53 4.49 -4.97 -0.02 4.50 16 7 C -0.51 -13.43 8.40 -34.44 -0.29 -13.72 16 8 H 0.06 1.67 7.29 -52.48 -0.38 1.29 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.62 13.29 55.43 0.74 -24.89 16 11 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.09 1.37 4.95 -4.97 -0.02 1.34 16 16 C -0.10 -1.48 4.90 -104.48 -0.51 -1.99 16 17 C -0.05 -0.59 9.86 -39.29 -0.39 -0.98 16 18 C -0.15 -1.85 9.88 -39.40 -0.39 -2.24 16 19 C 0.16 2.20 7.27 -17.45 -0.13 2.07 16 20 Cl -0.05 -0.54 29.11 -51.86 -1.51 -2.05 16 21 N -0.48 -7.11 10.34 -10.36 -0.11 -7.22 16 22 C 0.12 1.69 9.09 -17.55 -0.16 1.53 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.77 5.73 -51.93 -0.30 0.47 16 29 H 0.08 1.57 6.34 -51.93 -0.33 1.24 16 30 H 0.08 1.67 6.94 -51.93 -0.36 1.31 16 31 H 0.05 0.86 5.94 -51.93 -0.31 0.55 16 32 H 0.01 0.14 6.04 -51.93 -0.31 -0.17 16 33 H 0.03 0.65 7.93 -51.93 -0.41 0.24 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.04 0.68 6.04 -51.93 -0.31 0.37 16 36 H 0.08 1.27 7.89 -51.93 -0.41 0.86 16 37 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.16 2.07 7.34 -52.49 -0.39 1.69 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -28.32 330.33 -9.58 -37.90 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.61 Total: -0.34 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -1.94 Total: -13.01 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.49 Total: -43.52 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.32 -9.58 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137167129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.966 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds