Wall clock time and date at job start Tue Mar 31 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47228 * 2 1 4 4 C 1.53003 * 109.46955 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47171 * 179.68035 * 4 3 2 6 6 C 1.46910 * 110.99679 * 288.15988 * 5 4 3 7 7 C 1.50698 * 109.46721 * 160.35518 * 6 5 4 8 8 H 1.08003 * 120.00448 * 4.64282 * 7 6 5 9 9 C 1.37880 * 119.99848 * 184.64901 * 7 6 5 10 10 N 1.31517 * 119.99770 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00047 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47148 * 59.99747 * 11 9 7 13 13 H 1.48505 * 109.47052 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46956 * 299.99636 * 11 9 7 15 15 C 1.46899 * 111.00265 * 164.20902 * 5 4 3 16 16 C 1.50707 * 109.46849 * 293.95280 * 15 5 4 17 17 C 1.38706 * 120.77969 * 269.97316 * 16 15 5 18 18 C 1.38143 * 119.19267 * 180.02562 * 17 16 15 19 19 N 1.31907 * 120.78297 * 0.02562 * 18 17 16 20 20 C 1.31951 * 121.70578 * 359.69129 * 19 18 17 21 21 Cl 1.73601 * 119.63370 * 180.28826 * 20 19 18 22 22 C 1.38398 * 120.72797 * 0.57369 * 20 19 18 23 23 H 1.08996 * 109.47338 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46794 * 300.00302 * 1 2 3 25 25 H 1.09003 * 109.47004 * 59.99802 * 1 2 3 26 26 H 1.09000 * 109.46794 * 239.99698 * 2 1 3 27 27 H 1.09003 * 109.47004 * 120.00198 * 2 1 3 28 28 H 1.08993 * 109.46944 * 60.00465 * 3 2 1 29 29 H 1.08996 * 109.46750 * 299.99668 * 3 2 1 30 30 H 1.09000 * 109.46974 * 59.67359 * 4 3 2 31 31 H 1.09000 * 109.47123 * 299.67794 * 4 3 2 32 32 H 1.08998 * 109.47087 * 280.35098 * 6 5 4 33 33 H 1.08998 * 109.46657 * 40.35522 * 6 5 4 34 34 H 0.97004 * 119.99829 * 180.02562 * 10 9 7 35 35 H 1.08990 * 109.47224 * 173.95101 * 15 5 4 36 36 H 1.08998 * 109.47078 * 53.94690 * 15 5 4 37 37 H 1.08000 * 120.40287 * 0.02562 * 17 16 15 38 38 H 1.07999 * 119.61096 * 180.02562 * 18 17 16 39 39 H 1.08001 * 120.42127 * 179.73622 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8273 -0.0084 6 6 3.8318 3.4590 -1.3150 7 6 3.8835 4.9576 -1.1642 8 1 4.1413 5.3959 -0.2114 9 6 3.6016 5.7691 -2.2426 10 7 3.2880 5.2353 -3.4030 11 14 3.6664 7.6266 -2.0560 12 1 5.0342 8.0355 -1.6471 13 1 3.3255 8.2665 -3.3520 14 1 2.6915 8.0543 -1.0206 15 6 5.4797 2.8858 0.3639 16 6 5.6406 2.4566 1.7996 17 6 5.5778 3.3841 2.8290 18 6 5.7302 2.9547 4.1331 19 7 5.9338 1.6801 4.4047 20 6 5.9939 0.7690 3.4521 21 17 6.2568 -0.8950 3.8710 22 6 5.8556 1.1263 2.1222 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 1.6768 1.9562 -0.8900 30 1 3.9330 0.9236 -0.8879 31 1 3.9338 0.9334 0.8920 32 1 4.6039 3.1373 -2.0138 33 1 2.8530 3.1656 -1.6944 34 1 3.0900 5.8062 -4.1618 35 1 5.8443 3.9062 0.2467 36 1 6.0521 2.2190 -0.2809 37 1 5.4117 4.4293 2.6136 38 1 5.6821 3.6711 4.9399 39 1 5.9098 0.3771 1.3461 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138820786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:13 Heat of formation + Delta-G solvation = -2.690780 kcal Electronic energy + Delta-G solvation = -19844.251585 eV Core-core repulsion = 16811.343764 eV Total energy + Delta-G solvation = -3032.907820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.36020 -38.88174 -37.63220 -35.75749 -34.89999 -33.56167 -32.04325 -30.25267 -29.09472 -26.72170 -24.84077 -24.32773 -23.42428 -22.03808 -21.38403 -18.57617 -17.92540 -17.68389 -16.88430 -16.79076 -16.28975 -15.96314 -15.61085 -15.42818 -15.10944 -14.88850 -14.20671 -13.99589 -13.86011 -13.42292 -13.22350 -13.06881 -12.72606 -12.70375 -12.62113 -12.51151 -12.32637 -12.19803 -12.08369 -11.71320 -11.69355 -11.32692 -11.31416 -10.70980 -10.63879 -10.53350 -9.94997 -9.05610 -8.16265 -6.25617 -0.04933 0.10419 0.77950 1.44367 1.46528 1.54017 2.42602 2.60361 3.15542 3.30583 3.48802 3.66138 3.89903 4.00281 4.04945 4.11034 4.22277 4.31341 4.43829 4.53085 4.59588 4.66188 4.72959 4.81675 4.86358 4.94270 4.98928 5.09913 5.17550 5.25081 5.28906 5.38040 5.42530 5.50293 5.52447 5.69757 6.09712 6.33488 6.59225 6.69224 6.88963 7.43671 8.94007 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.005079 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.639558 B = 5511.512191 C = 6973.204572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.107 4.107 4 C 0.051 3.949 5 N -0.533 5.533 6 C 0.208 3.792 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.964 3.036 12 H -0.266 1.266 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.098 3.902 16 C -0.015 4.015 17 C -0.149 4.149 18 C 0.120 3.880 19 N -0.502 5.502 20 C 0.164 3.836 21 Cl -0.032 7.032 22 C -0.152 4.152 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.020 0.980 31 H 0.082 0.918 32 H -0.037 1.037 33 H 0.014 0.986 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.153 0.847 38 H 0.197 0.803 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -9.030 12.203 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.145 4.145 4 C -0.077 4.077 5 N -0.257 5.257 6 C 0.082 3.918 7 C -0.556 4.556 8 H 0.084 0.916 9 C -0.194 4.194 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.195 1.195 15 C -0.029 4.029 16 C -0.024 4.024 17 C -0.169 4.169 18 C -0.036 4.036 19 N -0.214 5.214 20 C 0.000 4.000 21 Cl -0.004 7.004 22 C -0.173 4.173 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.100 0.900 32 H -0.019 1.019 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.171 0.829 38 H 0.214 0.786 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.813 -9.137 13.262 16.349 hybrid contribution 0.297 0.610 -1.971 2.084 sum 3.110 -8.527 11.292 14.488 Atomic orbital electron populations 1.21740 0.95109 1.02173 1.01576 1.21458 0.96577 0.95238 1.02157 1.21509 0.94505 0.97331 1.01195 1.22250 0.96161 0.89307 0.99996 1.62087 1.15516 1.16345 1.31781 1.19437 0.94333 0.93971 0.84015 1.21436 1.45989 0.91696 0.96474 0.91610 1.25845 0.94989 1.03761 0.94837 1.70077 1.48458 1.37138 1.01919 0.85515 0.79031 0.79380 0.77171 1.19074 1.21367 1.19453 1.20941 0.89887 1.01861 0.90224 1.20303 0.93095 0.92682 0.96315 1.22379 0.99294 1.02161 0.93113 1.23131 0.93308 0.90609 0.96577 1.67029 1.14374 1.02898 1.37126 1.21641 1.00369 0.88231 0.89765 1.98386 1.94532 1.12962 1.94506 1.21802 1.02795 0.97089 0.95649 0.91183 0.92691 0.93635 0.92165 0.91066 0.92386 0.94270 0.96191 0.90025 1.01943 0.96791 0.92859 0.89702 0.94258 0.82894 0.78634 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.12 -3.01 5.93 30.60 0.18 -2.83 16 3 C -0.11 -3.59 5.28 30.60 0.16 -3.43 16 4 C 0.05 1.74 4.80 86.31 0.41 2.16 16 5 N -0.53 -21.42 4.37 -905.36 -3.96 -25.38 16 6 C 0.21 10.52 4.59 85.55 0.39 10.91 16 7 C -0.52 -27.83 8.61 25.60 0.22 -27.61 16 8 H 0.07 3.41 7.66 -2.91 -0.02 3.39 16 9 C 0.00 0.20 5.46 84.65 0.46 0.66 16 10 N -0.94 -54.89 13.29 21.45 0.28 -54.61 16 11 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 C 0.10 3.41 4.99 85.56 0.43 3.84 16 16 C -0.02 -0.44 4.95 -19.67 -0.10 -0.54 16 17 C -0.15 -3.81 9.82 22.36 0.22 -3.59 16 18 C 0.12 2.73 11.18 84.66 0.95 3.68 16 19 N -0.50 -13.37 10.34 -186.69 -1.93 -15.30 16 20 C 0.16 4.30 7.27 84.71 0.62 4.91 16 21 Cl -0.03 -0.75 29.11 -2.72 -0.08 -0.83 16 22 C -0.15 -3.99 7.76 22.39 0.17 -3.82 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.54 6.52 -2.39 -0.02 1.52 16 30 H 0.02 0.70 8.05 -2.39 -0.02 0.68 16 31 H 0.08 2.47 5.18 -2.39 -0.01 2.46 16 32 H -0.04 -2.03 8.00 -2.39 -0.02 -2.05 16 33 H 0.01 0.78 6.23 -2.39 -0.01 0.76 16 34 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 35 H 0.08 3.16 7.28 -2.39 -0.02 3.14 16 36 H 0.04 1.33 8.08 -2.39 -0.02 1.31 16 37 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.15 3.53 7.75 -2.91 -0.02 3.51 16 Total: -1.00 -61.37 336.57 2.20 -59.17 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.02 Total: 10.53 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.83 Total: -18.40 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -5.60 Total: -95.28 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -61.37 2.20 -59.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138820786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.477 kcal (2) G-P(sol) polarization free energy of solvation -61.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds