Wall clock time and date at job start Tue Mar 31 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47090 * 2 1 4 4 C 1.52995 * 109.47090 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46913 * 179.97438 * 4 3 2 6 6 C 1.46901 * 111.00018 * 66.04506 * 5 4 3 7 7 C 1.50701 * 109.46823 * 61.97552 * 6 5 4 8 8 H 1.07998 * 120.00390 * 4.70270 * 7 6 5 9 9 C 1.37880 * 119.99792 * 184.70839 * 7 6 5 10 10 N 1.31514 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00038 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46912 * 90.00067 * 11 9 7 13 13 H 1.48500 * 109.47093 * 209.99951 * 11 9 7 14 14 H 1.48503 * 109.47392 * 330.00260 * 11 9 7 15 15 C 1.46898 * 110.99725 * 190.00099 * 5 4 3 16 16 C 1.50704 * 109.46790 * 164.14139 * 15 5 4 17 17 C 1.38657 * 120.79384 * 104.99989 * 16 15 5 18 18 C 1.38193 * 119.17638 * 179.97438 * 17 16 15 19 19 N 1.31877 * 120.79346 * 359.97438 * 18 17 16 20 20 C 1.31856 * 121.73986 * 0.02562 * 19 18 17 21 21 C 1.38347 * 120.74168 * 359.74066 * 20 19 18 22 22 Cl 1.73607 * 120.43148 * 180.28911 * 21 20 19 23 23 H 1.08998 * 109.47291 * 300.00091 * 1 2 3 24 24 H 1.08996 * 109.47239 * 60.00206 * 1 2 3 25 25 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47291 * 239.99909 * 2 1 3 27 27 H 1.09007 * 109.47406 * 119.99341 * 2 1 3 28 28 H 1.08998 * 109.47128 * 59.99809 * 3 2 1 29 29 H 1.09007 * 109.46457 * 299.99921 * 3 2 1 30 30 H 1.08998 * 109.47291 * 59.99909 * 4 3 2 31 31 H 1.08996 * 109.47239 * 299.99794 * 4 3 2 32 32 H 1.08998 * 109.47169 * 181.97087 * 6 5 4 33 33 H 1.09003 * 109.47194 * 301.97697 * 6 5 4 34 34 H 0.97004 * 120.00006 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.47117 * 284.13776 * 15 5 4 36 36 H 1.08995 * 109.47672 * 44.14004 * 15 5 4 37 37 H 1.07999 * 120.40970 * 359.95157 * 17 16 15 38 38 H 1.07993 * 119.60393 * 179.97438 * 18 17 16 39 39 H 1.08003 * 119.62461 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8276 0.0000 6 6 3.7095 3.5103 1.2528 7 6 4.3709 2.8069 2.4099 8 1 5.0495 1.9869 2.2269 9 6 4.1095 3.2102 3.7022 10 7 3.2835 4.2090 3.9251 11 14 4.9287 2.3378 5.1366 12 1 6.2165 3.0066 5.4524 13 1 4.0381 2.3932 6.3236 14 1 5.1829 0.9204 4.7741 15 6 5.5085 2.8736 -0.2376 16 6 5.9110 4.2755 -0.6170 17 6 6.5679 5.0950 0.2882 18 6 6.9221 6.3745 -0.0952 19 7 6.6429 6.8183 -1.3053 20 6 6.0196 6.0681 -2.1926 21 6 5.6383 4.7749 -1.8823 22 17 4.8247 3.7916 -3.0592 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8901 30 1 3.9336 0.9286 -0.8891 31 1 3.9329 0.9289 0.8908 32 1 4.0531 4.5439 1.2116 33 1 2.6279 3.4920 1.3866 34 1 3.0993 4.4924 4.8343 35 1 6.0350 2.5774 0.6697 36 1 5.7659 2.1901 -1.0466 37 1 6.7997 4.7378 1.2808 38 1 7.4336 7.0188 0.6044 39 1 5.8076 6.4664 -3.1738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139846203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:15 Heat of formation + Delta-G solvation = 13.344515 kcal Electronic energy + Delta-G solvation = -20284.520260 eV Core-core repulsion = 17252.307783 eV Total energy + Delta-G solvation = -3032.212478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94582 -37.31522 -36.19827 -34.41860 -32.83316 -31.95422 -30.68856 -28.45057 -27.30394 -25.03986 -23.34708 -23.14406 -21.99880 -20.58389 -19.56916 -16.78838 -16.33839 -16.12954 -15.56354 -15.20252 -14.87895 -14.62075 -13.80585 -13.69179 -13.60823 -13.46267 -12.73472 -12.39285 -12.21025 -12.09577 -11.80058 -11.63199 -11.22505 -10.97314 -10.92509 -10.83131 -10.77303 -10.53191 -10.46001 -10.25635 -10.00438 -9.92763 -9.61346 -9.25203 -9.11389 -8.59723 -8.47387 -7.23144 -6.08205 -4.17646 1.27731 1.49392 2.44236 3.20737 3.29421 3.30964 3.97455 4.34064 4.67440 4.85667 4.98675 5.19844 5.23512 5.32479 5.39205 5.54356 5.56142 5.63987 5.84373 5.90715 6.01673 6.13207 6.16488 6.22856 6.24697 6.29930 6.39118 6.51856 6.53856 6.66496 6.85446 6.93965 6.96330 7.22083 7.48932 7.85337 7.99393 8.11089 8.20958 8.22792 8.92518 9.48871 10.96353 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.007497 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.329689 B = 3733.901008 C = 5720.301754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.067 3.933 5 N -0.530 5.530 6 C 0.185 3.815 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.068 3.932 10 N -0.887 5.887 11 Si 0.884 3.116 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.090 3.910 16 C -0.005 4.005 17 C -0.139 4.139 18 C 0.092 3.908 19 N -0.481 5.481 20 C 0.098 3.902 21 C -0.071 4.071 22 Cl -0.055 7.055 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.025 0.975 33 H 0.038 0.962 34 H 0.262 0.738 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 -2.444 -9.945 10.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.148 4.148 4 C -0.061 4.061 5 N -0.254 5.254 6 C 0.059 3.941 7 C -0.587 4.587 8 H 0.074 0.926 9 C -0.135 4.135 10 N -0.525 5.525 11 Si 0.712 3.288 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.038 4.038 16 C -0.014 4.014 17 C -0.159 4.159 18 C -0.064 4.064 19 N -0.190 5.190 20 C -0.060 4.060 21 C -0.100 4.100 22 Cl -0.026 7.026 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.681 -1.330 -10.513 10.931 hybrid contribution 0.428 -1.731 1.896 2.603 sum 3.109 -3.061 -8.618 9.659 Atomic orbital electron populations 1.21745 0.96432 1.00712 1.01754 1.21472 0.95338 0.97830 1.01252 1.21524 0.95443 0.95325 1.02548 1.21877 0.94961 0.89980 0.99313 1.62515 1.09441 1.15085 1.38319 1.19807 0.97261 0.93838 0.83160 1.21663 1.27623 1.17473 0.91962 0.92592 1.24919 0.94953 0.94880 0.98730 1.69942 1.34840 1.26782 1.20917 0.86731 0.79442 0.80140 0.82524 1.20663 1.21162 1.20007 1.20940 0.92025 0.90371 1.00454 1.20295 0.92740 0.97616 0.90781 1.22246 0.98365 0.94538 1.00759 1.22754 0.96905 0.93985 0.92795 1.67729 1.12525 1.35856 1.02921 1.22616 0.95261 0.88907 0.99250 1.21922 1.01458 0.94153 0.92498 1.98345 1.77793 1.70111 1.56383 0.92694 0.93077 0.93492 0.92850 0.92273 0.90971 0.92412 0.93391 0.93853 0.95659 0.94353 0.92806 0.91973 0.91253 0.83581 0.82558 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.15 0.37 -1.58 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.11 -1.93 5.14 -26.73 -0.14 -2.06 16 4 C 0.07 1.23 4.76 -3.82 -0.02 1.21 16 5 N -0.53 -10.58 4.66 -237.51 -1.11 -11.69 16 6 C 0.18 4.45 4.77 -4.97 -0.02 4.43 16 7 C -0.55 -13.93 7.33 -34.44 -0.25 -14.19 16 8 H 0.06 1.41 5.95 -52.49 -0.31 1.10 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 11 Si 0.88 20.49 29.54 -169.99 -5.02 15.47 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 C 0.09 1.64 4.36 -4.97 -0.02 1.62 16 16 C -0.01 -0.09 4.69 -104.28 -0.49 -0.58 16 17 C -0.14 -2.34 9.27 -39.44 -0.37 -2.70 16 18 C 0.09 1.42 11.18 -17.55 -0.20 1.22 16 19 N -0.48 -7.73 10.36 -13.22 -0.14 -7.87 16 20 C 0.10 1.48 10.99 -17.50 -0.19 1.29 16 21 C -0.07 -1.14 6.34 -39.36 -0.25 -1.39 16 22 Cl -0.06 -0.82 27.82 -51.86 -1.44 -2.26 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.46 6.51 -51.93 -0.34 1.12 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.80 7.86 -51.93 -0.41 0.39 16 31 H 0.04 0.88 6.52 -51.93 -0.34 0.54 16 32 H 0.03 0.67 7.03 -51.93 -0.37 0.30 16 33 H 0.04 1.02 6.38 -51.93 -0.33 0.69 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.06 1.21 6.10 -51.93 -0.32 0.90 16 36 H 0.07 1.15 7.34 -51.93 -0.38 0.77 16 37 H 0.15 2.48 8.05 -52.49 -0.42 2.06 16 38 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 39 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -27.59 332.15 -9.53 -37.12 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.73 Total: 1.40 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.83 Total: -12.94 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.51 Total: -43.80 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.44 Total: -2.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.59 -9.53 -37.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139846203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.464 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds