Wall clock time and date at job start Tue Mar 31 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47090 * 2 1 4 4 C 1.52995 * 109.47090 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46913 * 179.97438 * 4 3 2 6 6 C 1.46901 * 111.00018 * 66.04506 * 5 4 3 7 7 C 1.50701 * 109.46823 * 61.97552 * 6 5 4 8 8 H 1.07998 * 120.00390 * 4.70270 * 7 6 5 9 9 C 1.37880 * 119.99792 * 184.70839 * 7 6 5 10 10 N 1.31514 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00038 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46912 * 90.00067 * 11 9 7 13 13 H 1.48500 * 109.47093 * 209.99951 * 11 9 7 14 14 H 1.48503 * 109.47392 * 330.00260 * 11 9 7 15 15 C 1.46898 * 110.99725 * 190.00099 * 5 4 3 16 16 C 1.50704 * 109.46790 * 164.14139 * 15 5 4 17 17 C 1.38657 * 120.79384 * 104.99989 * 16 15 5 18 18 C 1.38193 * 119.17638 * 179.97438 * 17 16 15 19 19 N 1.31877 * 120.79346 * 359.97438 * 18 17 16 20 20 C 1.31856 * 121.73986 * 0.02562 * 19 18 17 21 21 C 1.38347 * 120.74168 * 359.74066 * 20 19 18 22 22 Cl 1.73607 * 120.43148 * 180.28911 * 21 20 19 23 23 H 1.08998 * 109.47291 * 300.00091 * 1 2 3 24 24 H 1.08996 * 109.47239 * 60.00206 * 1 2 3 25 25 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47291 * 239.99909 * 2 1 3 27 27 H 1.09007 * 109.47406 * 119.99341 * 2 1 3 28 28 H 1.08998 * 109.47128 * 59.99809 * 3 2 1 29 29 H 1.09007 * 109.46457 * 299.99921 * 3 2 1 30 30 H 1.08998 * 109.47291 * 59.99909 * 4 3 2 31 31 H 1.08996 * 109.47239 * 299.99794 * 4 3 2 32 32 H 1.08998 * 109.47169 * 181.97087 * 6 5 4 33 33 H 1.09003 * 109.47194 * 301.97697 * 6 5 4 34 34 H 0.97004 * 120.00006 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.47117 * 284.13776 * 15 5 4 36 36 H 1.08995 * 109.47672 * 44.14004 * 15 5 4 37 37 H 1.07999 * 120.40970 * 359.95157 * 17 16 15 38 38 H 1.07993 * 119.60393 * 179.97438 * 18 17 16 39 39 H 1.08003 * 119.62461 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8276 0.0000 6 6 3.7095 3.5103 1.2528 7 6 4.3709 2.8069 2.4099 8 1 5.0495 1.9869 2.2269 9 6 4.1095 3.2102 3.7022 10 7 3.2835 4.2090 3.9251 11 14 4.9287 2.3378 5.1366 12 1 6.2165 3.0066 5.4524 13 1 4.0381 2.3932 6.3236 14 1 5.1829 0.9204 4.7741 15 6 5.5085 2.8736 -0.2376 16 6 5.9110 4.2755 -0.6170 17 6 6.5679 5.0950 0.2882 18 6 6.9221 6.3745 -0.0952 19 7 6.6429 6.8183 -1.3053 20 6 6.0196 6.0681 -2.1926 21 6 5.6383 4.7749 -1.8823 22 17 4.8247 3.7916 -3.0592 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8901 30 1 3.9336 0.9286 -0.8891 31 1 3.9329 0.9289 0.8908 32 1 4.0531 4.5439 1.2116 33 1 2.6279 3.4920 1.3866 34 1 3.0993 4.4924 4.8343 35 1 6.0350 2.5774 0.6697 36 1 5.7659 2.1901 -1.0466 37 1 6.7997 4.7378 1.2808 38 1 7.4336 7.0188 0.6044 39 1 5.8076 6.4664 -3.1738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139846203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:15 Heat of formation + Delta-G solvation = -1.761925 kcal Electronic energy + Delta-G solvation = -20285.175325 eV Core-core repulsion = 17252.307783 eV Total energy + Delta-G solvation = -3032.867542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22706 -38.90075 -37.42412 -35.73974 -34.69615 -33.43671 -31.93351 -29.88054 -29.07842 -26.60605 -25.06790 -24.41417 -23.28058 -21.90131 -21.24462 -18.57838 -17.67587 -17.60186 -16.87101 -16.72178 -16.54475 -16.17450 -15.34792 -14.99452 -14.92939 -14.84278 -14.29169 -13.84016 -13.71965 -13.39861 -13.15873 -13.05311 -12.84663 -12.76736 -12.42033 -12.32610 -12.08615 -12.05300 -11.99709 -11.81130 -11.63210 -11.54104 -11.24198 -10.55947 -10.52666 -10.46828 -9.82236 -8.97478 -8.10867 -6.29012 0.02796 0.18769 1.19820 1.36140 1.38767 1.46959 2.38353 2.70184 3.14581 3.38949 3.52848 3.69255 3.88931 4.04521 4.12309 4.22274 4.33683 4.39775 4.54738 4.56923 4.74239 4.77174 4.83688 4.91741 4.93186 5.01875 5.12541 5.17425 5.27005 5.29590 5.38366 5.41319 5.52392 5.57770 5.60133 5.80777 6.09258 6.29263 6.53750 6.86894 6.91667 7.41554 8.90906 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.007497 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.329689 B = 3733.901008 C = 5720.301754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.104 4.104 4 C 0.068 3.932 5 N -0.528 5.528 6 C 0.207 3.793 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.018 3.982 10 N -0.923 5.923 11 Si 0.946 3.054 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.095 3.905 16 C -0.023 4.023 17 C -0.153 4.153 18 C 0.094 3.906 19 N -0.490 5.490 20 C 0.101 3.899 21 C -0.077 4.077 22 Cl -0.043 7.043 23 H 0.040 0.960 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.023 0.977 32 H -0.001 1.001 33 H 0.007 0.993 34 H 0.262 0.738 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.183 0.817 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -3.342 -11.103 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.142 4.142 4 C -0.060 4.060 5 N -0.250 5.250 6 C 0.080 3.920 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.181 4.181 10 N -0.563 5.563 11 Si 0.772 3.228 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.033 4.033 16 C -0.032 4.032 17 C -0.174 4.174 18 C -0.062 4.062 19 N -0.199 5.199 20 C -0.057 4.057 21 C -0.107 4.107 22 Cl -0.015 7.015 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.017 0.983 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.155 0.845 38 H 0.200 0.800 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.314 -2.244 -11.687 12.353 hybrid contribution 0.234 -1.443 2.168 2.614 sum 3.547 -3.686 -9.519 10.807 Atomic orbital electron populations 1.21727 0.95215 1.02017 1.01473 1.21438 0.96417 0.95616 1.01907 1.21448 0.94778 0.97136 1.00795 1.21952 0.95592 0.88880 0.99564 1.62446 1.10977 1.15914 1.35704 1.19345 0.94998 0.92809 0.84807 1.21873 1.26957 1.17033 0.92443 0.92402 1.25668 0.95564 0.95546 1.01366 1.70069 1.36488 1.28424 1.21350 0.85743 0.78551 0.79267 0.79262 1.19865 1.21338 1.19352 1.20918 0.90347 0.91649 1.00367 1.20328 0.93687 0.97440 0.91767 1.22272 0.99257 0.95396 1.00462 1.23129 0.96250 0.93651 0.93121 1.67823 1.12884 1.36049 1.03178 1.23077 0.94051 0.88396 1.00147 1.21989 1.01648 0.94771 0.92274 1.98344 1.77546 1.69870 1.55706 0.94097 0.92300 0.91376 0.90698 0.93012 0.94700 0.92089 0.90663 0.95832 0.98336 0.97442 0.92905 0.93601 0.89274 0.84506 0.80019 0.79849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.91 71.98 0.71 -2.90 16 2 C -0.12 -3.21 5.93 30.60 0.18 -3.03 16 3 C -0.10 -3.60 5.14 30.60 0.16 -3.44 16 4 C 0.07 2.47 4.76 86.30 0.41 2.88 16 5 N -0.53 -21.15 4.66 -905.36 -4.21 -25.36 16 6 C 0.21 10.30 4.77 85.56 0.41 10.71 16 7 C -0.54 -28.21 7.33 25.60 0.19 -28.02 16 8 H 0.06 2.94 5.95 -2.91 -0.02 2.92 16 9 C 0.02 0.98 5.46 84.66 0.46 1.44 16 10 N -0.92 -53.37 13.29 21.45 0.28 -53.08 16 11 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 15 C 0.09 3.42 4.36 85.56 0.37 3.79 16 16 C -0.02 -0.80 4.69 -19.64 -0.09 -0.89 16 17 C -0.15 -5.18 9.27 22.36 0.21 -4.98 16 18 C 0.09 2.83 11.18 84.68 0.95 3.78 16 19 N -0.49 -15.00 10.36 -195.75 -2.03 -17.03 16 20 C 0.10 2.89 10.99 84.72 0.93 3.82 16 21 C -0.08 -2.40 6.34 22.41 0.14 -2.26 16 22 Cl -0.04 -1.21 27.82 -2.72 -0.08 -1.29 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.03 1.46 6.51 -2.39 -0.02 1.44 16 29 H 0.06 2.05 8.14 -2.38 -0.02 2.04 16 30 H 0.08 2.33 7.86 -2.39 -0.02 2.32 16 31 H 0.02 0.95 6.52 -2.39 -0.02 0.93 16 32 H 0.00 -0.08 7.03 -2.39 -0.02 -0.10 16 33 H 0.01 0.42 6.38 -2.39 -0.02 0.40 16 34 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.05 1.80 6.10 -2.39 -0.01 1.79 16 36 H 0.09 2.82 7.34 -2.39 -0.02 2.80 16 37 H 0.14 4.79 8.05 -2.91 -0.02 4.77 16 38 H 0.18 4.35 8.06 -2.91 -0.02 4.32 16 39 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -59.44 332.15 2.05 -57.39 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 1.03 Total: 14.09 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 5.03 Total: -19.11 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -5.96 Total: -95.48 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -59.44 2.05 -57.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139846203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.624 kcal (2) G-P(sol) polarization free energy of solvation -59.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds