Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47184 * 2 1 4 4 N 1.46905 * 109.46976 * 177.85995 * 3 2 1 5 5 C 1.46901 * 111.00104 * 58.75474 * 4 3 2 6 6 C 1.50699 * 109.47023 * 66.04486 * 5 4 3 7 7 H 1.08006 * 119.99933 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99827 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99945 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99862 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47276 * 90.00095 * 10 8 6 12 12 H 1.48504 * 109.47076 * 210.00398 * 10 8 6 13 13 H 1.48502 * 109.46865 * 330.00119 * 10 8 6 14 14 C 1.46901 * 110.99993 * 294.80047 * 4 3 2 15 15 C 1.50709 * 109.47166 * 291.16345 * 14 4 3 16 16 C 1.38607 * 120.42245 * 103.30967 * 15 14 4 17 17 C 1.38671 * 118.43653 * 179.73168 * 16 15 14 18 18 C 1.38191 * 119.18956 * 0.49401 * 17 16 15 19 19 C 1.50698 * 119.60528 * 179.77592 * 18 17 16 20 20 N 1.31876 * 120.77814 * 359.49625 * 18 17 16 21 21 C 1.31971 * 121.71050 * 0.25538 * 20 18 17 22 22 Cl 1.73600 * 119.63708 * 180.02562 * 21 20 18 23 23 H 1.09000 * 109.47195 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47247 * 299.99665 * 1 2 3 25 25 H 1.08997 * 109.47075 * 59.99787 * 1 2 3 26 26 H 1.08997 * 109.47552 * 239.99887 * 2 1 3 27 27 H 1.09005 * 109.47651 * 120.00026 * 2 1 3 28 28 H 1.08997 * 109.47010 * 57.86018 * 3 2 1 29 29 H 1.08993 * 109.47109 * 297.85715 * 3 2 1 30 30 H 1.09003 * 109.46582 * 186.04497 * 5 4 3 31 31 H 1.08997 * 109.46710 * 306.04693 * 5 4 3 32 32 H 0.97008 * 120.00061 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.46965 * 171.17157 * 14 4 3 34 34 H 1.08992 * 109.47075 * 51.16314 * 14 4 3 35 35 H 1.08003 * 120.78174 * 0.02562 * 16 15 14 36 36 H 1.07998 * 120.40416 * 180.26334 * 17 16 15 37 37 H 1.09003 * 109.46670 * 269.72002 * 19 18 17 38 38 H 1.08998 * 109.47364 * 29.72302 * 19 18 17 39 39 H 1.09006 * 109.46533 * 149.72733 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5081 1.4428 0.0517 5 6 4.0753 0.7170 -1.0926 6 6 3.7612 1.4609 -2.3650 7 1 3.1970 2.3811 -2.3273 8 6 4.1950 0.9673 -3.5771 9 7 4.8824 -0.1529 -3.6229 10 14 3.8063 1.8898 -5.1543 11 1 4.8937 2.8594 -5.4414 12 1 3.6942 0.9248 -6.2774 13 1 2.5219 2.6186 -4.9977 14 6 3.9902 0.8831 1.3215 15 6 3.6513 1.8263 2.4471 16 6 2.5928 1.5513 3.2986 17 6 2.3209 2.4445 4.3239 18 6 3.1020 3.5768 4.4562 19 6 2.8116 4.5563 5.5640 20 7 4.1018 3.8075 3.6277 21 6 4.3930 2.9776 2.6438 22 17 5.7218 3.3339 1.5851 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6456 1.9673 0.8702 29 1 1.7083 1.9451 -0.9085 30 1 5.1561 0.6397 -0.9741 31 1 3.6425 -0.2823 -1.1396 32 1 5.1880 -0.5000 -4.4756 33 1 5.0709 0.7495 1.2726 34 1 3.5124 -0.0803 1.4986 35 1 1.9968 0.6599 3.1695 36 1 1.5063 2.2593 5.0084 37 1 2.1069 5.3082 5.2086 38 1 2.3802 4.0267 6.4134 39 1 3.7376 5.0425 5.8710 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142136407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = 20.065096 kcal Electronic energy + Delta-G solvation = -20239.326282 eV Core-core repulsion = 17207.405230 eV Total energy + Delta-G solvation = -3031.921052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33939 -37.53406 -36.22097 -33.55937 -32.79471 -32.10747 -31.66716 -28.83141 -26.79322 -25.62053 -23.91101 -23.15052 -22.14133 -21.53159 -19.27857 -16.93932 -16.41590 -16.15538 -15.31758 -15.14711 -14.68139 -14.49015 -14.27236 -13.71380 -13.46237 -13.30748 -12.94945 -12.77902 -12.41355 -12.30549 -11.96675 -11.52164 -11.37431 -11.19585 -11.09343 -10.98952 -10.88900 -10.70099 -10.59470 -10.52185 -9.95117 -9.75287 -9.65972 -9.48212 -9.18369 -8.53349 -8.39808 -7.17058 -6.00616 -4.00730 1.03883 1.24750 2.21579 3.33701 3.39840 3.43176 3.67425 4.37162 4.45302 4.68128 4.87768 4.96843 5.16605 5.23095 5.35762 5.37221 5.45781 5.47874 5.51051 5.51752 5.79535 5.81172 5.87975 6.02639 6.07401 6.10200 6.23138 6.35733 6.36994 6.45815 6.58863 6.73118 6.92155 7.31313 7.40025 7.81303 7.85598 8.09822 8.20296 8.55258 9.06435 9.63046 11.10150 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.005295 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.961809 B = 5286.458022 C = 6140.840267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.067 3.933 4 N -0.522 5.522 5 C 0.192 3.808 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.087 3.913 15 C -0.102 4.102 16 C -0.060 4.060 17 C -0.175 4.175 18 C 0.131 3.869 19 C -0.100 4.100 20 N -0.485 5.485 21 C 0.198 3.802 22 Cl -0.011 7.011 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.000 1.000 32 H 0.260 0.740 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 2.977 16.433 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.062 4.062 4 N -0.245 5.245 5 C 0.067 3.933 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.041 4.041 15 C -0.105 4.105 16 C -0.086 4.086 17 C -0.195 4.195 18 C -0.007 4.007 19 C -0.158 4.158 20 N -0.197 5.197 21 C 0.033 3.967 22 Cl 0.018 6.982 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.103 4.131 16.264 17.540 hybrid contribution -0.812 -1.153 -1.147 1.818 sum -5.915 2.978 15.117 16.504 Atomic orbital electron populations 1.21652 0.96533 1.00670 1.01177 1.22171 0.95435 1.00348 1.02243 1.22047 0.88445 0.94381 1.01327 1.62370 1.06423 1.54854 1.00866 1.19789 0.94909 0.92089 0.86476 1.21112 1.34259 1.08324 0.90231 0.91992 1.24939 0.95386 0.95070 0.99061 1.69950 1.37793 1.20422 1.25744 0.86557 0.78782 0.79494 0.82936 1.20692 1.21419 1.19920 1.21032 1.01262 0.93105 0.88746 1.20701 0.95533 0.96263 0.98044 1.21503 0.95076 0.99160 0.92904 1.21918 1.01698 0.95779 1.00131 1.21076 0.90420 0.94416 0.94778 1.20690 1.02968 0.97505 0.94606 1.66860 1.17736 1.31066 1.04008 1.21542 0.92392 0.91120 0.91633 1.98435 1.43520 1.94700 1.61564 0.93582 0.93663 0.92721 0.90243 0.93229 0.93399 0.90117 0.95306 0.98235 0.93021 0.89772 0.93983 0.84362 0.84619 0.90389 0.90706 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.91 37.15 0.37 -1.64 16 2 C -0.16 -2.76 5.26 -26.74 -0.14 -2.90 16 3 C 0.07 1.24 4.98 -3.82 -0.02 1.22 16 4 N -0.52 -10.76 4.66 -237.52 -1.11 -11.87 16 5 C 0.19 4.77 4.45 -4.98 -0.02 4.75 16 6 C -0.50 -13.70 8.53 -34.44 -0.29 -14.00 16 7 H 0.06 1.71 7.10 -52.48 -0.37 1.34 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 10 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.09 1.53 4.33 -4.97 -0.02 1.50 16 15 C -0.10 -1.61 4.60 -104.44 -0.48 -2.09 16 16 C -0.06 -0.77 9.04 -39.29 -0.36 -1.13 16 17 C -0.18 -1.98 9.74 -39.44 -0.38 -2.37 16 18 C 0.13 1.67 6.78 -82.59 -0.56 1.11 16 19 C -0.10 -0.88 10.17 36.00 0.37 -0.52 16 20 N -0.48 -7.71 10.25 -6.62 -0.07 -7.77 16 21 C 0.20 3.34 7.27 -17.45 -0.13 3.22 16 22 Cl -0.01 -0.20 27.75 -51.86 -1.44 -1.64 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.60 6.37 -51.93 -0.33 1.27 16 27 H 0.05 0.78 6.26 -51.93 -0.33 0.45 16 28 H 0.05 0.82 6.64 -51.93 -0.34 0.48 16 29 H 0.08 1.68 6.89 -51.93 -0.36 1.32 16 30 H 0.03 0.78 7.90 -51.93 -0.41 0.37 16 31 H 0.00 0.00 6.01 -51.93 -0.31 -0.31 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.08 1.53 7.25 -51.93 -0.38 1.15 16 34 H 0.04 0.69 5.91 -51.93 -0.31 0.38 16 35 H 0.14 1.51 8.05 -52.48 -0.42 1.08 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -29.97 330.88 -9.33 -39.30 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.65 Total: -2.72 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -1.77 Total: -11.35 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.44 Total: -45.20 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.44 Total: -1.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.97 -9.33 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142136407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.367 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds