Wall clock time and date at job start Tue Mar 31 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 120.00453 * 2 1 4 4 H 1.48491 * 109.47324 * 270.00612 * 3 2 1 5 5 H 1.48507 * 109.46922 * 30.00379 * 3 2 1 6 6 H 1.48497 * 109.47277 * 149.99738 * 3 2 1 7 7 C 1.40035 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.41318 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78073 * 179.97438 * 9 7 2 11 11 C 1.38343 * 119.14899 * 180.02562 * 10 9 7 12 12 C 1.38642 * 118.67882 * 0.02562 * 11 10 9 13 13 C 1.39760 * 119.48887 * 359.97438 * 12 11 10 14 14 N 1.38833 * 119.58020 * 179.97438 * 13 12 11 15 15 C 1.44371 * 110.95076 * 58.11521 * 14 13 12 16 16 C 1.54075 * 111.88673 * 219.37388 * 15 14 13 17 17 C 1.54283 * 112.28805 * 318.90676 * 16 15 14 18 18 C 1.50459 * 113.03179 * 318.30771 * 17 16 15 19 19 F 1.39897 * 109.57328 * 332.34748 * 18 17 16 20 20 F 1.39900 * 109.67987 * 212.02834 * 18 17 16 21 21 C 1.54505 * 108.84716 * 92.16028 * 18 17 16 22 22 C 1.45863 * 111.59674 * 282.79136 * 21 18 17 23 23 N 1.31976 * 120.83515 * 0.26133 * 13 12 11 24 24 H 0.96999 * 119.99715 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.42625 * 359.97438 * 10 9 7 26 26 H 1.07994 * 120.66449 * 179.97438 * 11 10 9 27 27 H 1.07997 * 120.25488 * 179.97438 * 12 11 10 28 28 H 1.08993 * 109.03243 * 98.75658 * 15 14 13 29 29 H 1.08999 * 108.96117 * 339.94026 * 15 14 13 30 30 H 1.08995 * 108.91667 * 198.18528 * 16 15 14 31 31 H 1.08996 * 108.84342 * 79.58188 * 16 15 14 32 32 H 1.08995 * 108.77432 * 197.38603 * 17 16 15 33 33 H 1.09003 * 108.67672 * 79.15734 * 17 16 15 34 34 H 1.09001 * 109.05432 * 162.25089 * 21 18 17 35 35 H 1.08998 * 109.05719 * 43.33730 * 21 18 17 36 36 H 1.09002 * 108.79553 * 182.21083 * 22 21 18 37 37 H 1.09002 * 108.79961 * 300.55335 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6526 0.7002 6 1 3.5390 1.4400 0.7001 7 6 2.0076 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4366 -0.0005 10 6 2.0083 -3.6515 -0.0016 11 6 1.3033 -4.8418 -0.0022 12 6 -0.0823 -4.7944 -0.0021 13 6 -0.7283 -3.5551 -0.0010 14 7 -2.1157 -3.5054 -0.0015 15 6 -2.6575 -4.1999 1.1423 16 6 -3.9243 -4.9994 0.7817 17 6 -4.8552 -4.2221 -0.1720 18 6 -4.9839 -2.7668 0.1876 19 9 -4.7785 -2.6036 1.5618 20 9 -6.2611 -2.3085 -0.1531 21 6 -3.9203 -1.9635 -0.5938 22 6 -2.5956 -2.1075 -0.0003 23 7 -0.0361 -2.4314 -0.0052 24 1 -0.4850 0.8401 0.0004 25 1 3.0884 -3.6555 -0.0029 26 1 1.8219 -5.7891 -0.0034 27 1 -0.6580 -5.7082 -0.0030 28 1 -2.9055 -3.4725 1.9151 29 1 -1.9041 -4.8856 1.5299 30 1 -4.4691 -5.2301 1.6972 31 1 -3.6273 -5.9325 0.3030 32 1 -5.8445 -4.6787 -0.1460 33 1 -4.4604 -4.2994 -1.1850 34 1 -4.1982 -0.9095 -0.5923 35 1 -3.8897 -2.3208 -1.6231 36 1 -1.8909 -1.4937 -0.5612 37 1 -2.6309 -1.7493 1.0286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144343136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:38 Heat of formation + Delta-G solvation = -51.683679 kcal Electronic energy + Delta-G solvation = -23094.037437 eV Core-core repulsion = 19507.208445 eV Total energy + Delta-G solvation = -3586.828992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.75124 -46.73641 -39.29802 -37.07807 -33.89369 -33.06042 -32.31052 -30.44222 -29.21725 -26.31385 -25.50719 -24.24148 -21.85708 -21.20719 -20.15348 -19.57119 -17.67552 -17.16211 -16.52436 -16.32471 -15.74850 -14.87216 -14.82349 -14.62139 -14.21506 -13.80949 -13.61434 -13.36640 -13.01314 -12.96245 -12.54429 -12.52196 -12.16387 -12.11400 -11.63267 -11.40346 -11.19184 -11.08738 -11.02155 -10.77329 -10.62199 -10.44486 -10.24528 -10.04568 -9.98655 -9.48042 -8.82389 -8.07171 -7.62909 -7.03178 -6.49027 -4.58079 2.68959 2.96766 3.05799 3.08322 3.17547 3.89966 4.05919 4.26747 4.46478 4.65974 4.70994 4.78056 5.26650 5.29445 5.44414 5.62846 5.76422 5.86062 5.93596 5.99923 6.06010 6.15516 6.18929 6.24303 6.33553 6.46109 6.56930 6.62872 6.75372 6.89672 7.07449 7.19077 7.45808 7.65006 7.75240 7.77530 8.14994 8.30993 8.64893 8.92952 10.01702 10.24180 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.006249 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.310199 B = 4479.835690 C = 5702.622758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.430 4.430 8 H 0.083 0.917 9 C 0.275 3.725 10 C -0.293 4.293 11 C -0.045 4.045 12 C -0.320 4.320 13 C 0.323 3.677 14 N -0.471 5.471 15 C 0.046 3.954 16 C -0.099 4.099 17 C -0.153 4.153 18 C 0.287 3.713 19 F -0.200 7.200 20 F -0.210 7.210 21 C -0.142 4.142 22 C 0.045 3.955 23 N -0.510 5.510 24 H 0.272 0.728 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 -3.808 0.120 8.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.342 5.342 2 C -0.152 4.152 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.462 4.462 8 H 0.101 0.899 9 C 0.149 3.851 10 C -0.316 4.316 11 C -0.069 4.069 12 C -0.345 4.345 13 C 0.086 3.914 14 N -0.189 5.189 15 C -0.082 4.082 16 C -0.138 4.138 17 C -0.192 4.192 18 C 0.251 3.749 19 F -0.181 7.181 20 F -0.191 7.191 21 C -0.180 4.180 22 C -0.082 4.082 23 N -0.228 5.228 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.155 0.845 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.444 -3.077 -0.284 8.992 hybrid contribution 0.873 0.231 0.680 1.130 sum -7.571 -2.845 0.396 8.098 Atomic orbital electron populations 1.70033 1.07214 1.27610 1.29370 1.26024 0.94897 1.00997 0.93282 0.86327 0.80480 0.80801 0.79210 1.19431 1.20166 1.18617 1.19595 0.94254 0.89333 1.43010 0.89851 1.18329 0.87362 0.91975 0.87425 1.21651 0.98641 0.93466 1.17853 1.20705 0.93580 0.96601 0.96026 1.20652 0.94242 0.95859 1.23716 1.19805 0.87992 0.90505 0.93136 1.58771 1.06024 1.14689 1.39383 1.22220 0.96279 0.98313 0.91383 1.21788 0.94988 0.98539 0.98459 1.22236 1.01554 0.91988 1.03386 1.21069 0.80033 0.96465 0.77360 1.92935 1.94686 1.96848 1.33599 1.92971 1.43005 1.90947 1.92160 1.21654 0.94724 1.00690 1.00938 1.20938 0.94904 0.89856 1.02468 1.68581 1.07897 1.24762 1.21558 0.91728 0.88448 0.88564 0.88633 0.92470 0.90709 0.91677 0.90957 0.90616 0.88528 0.89639 0.89027 0.84468 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.88 10.44 55.55 0.58 -17.30 16 2 C 0.07 1.77 5.50 -17.34 -0.10 1.68 16 3 Si 0.91 18.06 29.56 -169.99 -5.02 13.04 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.43 -11.13 9.14 -37.74 -0.34 -11.47 16 8 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 9 C 0.28 7.30 6.55 -85.00 -0.56 6.75 16 10 C -0.29 -7.09 9.83 -38.66 -0.38 -7.47 16 11 C -0.04 -0.99 10.15 -39.39 -0.40 -1.39 16 12 C -0.32 -7.08 8.77 -38.86 -0.34 -7.42 16 13 C 0.32 7.55 6.31 -155.31 -0.98 6.58 16 14 N -0.47 -9.31 4.24 -177.75 -0.75 -10.06 16 15 C 0.05 0.80 4.89 -4.62 -0.02 0.77 16 16 C -0.10 -1.36 5.73 -25.50 -0.15 -1.50 16 17 C -0.15 -2.05 5.16 -27.33 -0.14 -2.19 16 18 C 0.29 4.36 2.10 -27.21 -0.06 4.31 16 19 F -0.20 -3.36 13.35 2.25 0.03 -3.33 16 20 F -0.21 -3.21 17.01 2.25 0.04 -3.18 16 21 C -0.14 -2.26 5.18 -29.32 -0.15 -2.41 16 22 C 0.04 0.88 4.46 -6.70 -0.03 0.85 16 23 N -0.51 -13.25 5.80 -10.33 -0.06 -13.31 16 24 H 0.27 6.15 8.29 -40.82 -0.34 5.81 16 25 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 26 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.10 1.91 7.68 -52.49 -0.40 1.50 16 28 H 0.06 1.04 5.43 -51.93 -0.28 0.76 16 29 H 0.07 1.33 6.40 -51.93 -0.33 0.99 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.10 1.28 7.38 -51.93 -0.38 0.90 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.37 7.59 -51.93 -0.39 0.98 16 36 H 0.14 3.12 5.63 -51.93 -0.29 2.83 16 37 H 0.05 1.00 6.65 -51.93 -0.35 0.65 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -27.03 296.98 -8.87 -35.90 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.51 Total: 6.68 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -3.65 Total: -12.92 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.23 Total: -40.67 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.07 Total: -6.50 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.04 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.03 -8.87 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144343136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.784 kcal (2) G-P(sol) polarization free energy of solvation -27.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds