Wall clock time and date at job start Tue Mar 31 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46496 * 109.47331 * 2 1 4 4 C 1.36942 * 119.99836 * 275.91154 * 3 2 1 5 5 H 1.08005 * 120.00282 * 34.07381 * 4 3 2 6 6 C 1.38815 * 120.00074 * 214.07313 * 4 3 2 7 7 N 1.31626 * 119.99764 * 17.03750 * 6 4 3 8 8 Si 1.86803 * 120.00075 * 197.03525 * 6 4 3 9 9 H 1.48495 * 109.46822 * 90.00005 * 8 6 4 10 10 H 1.48503 * 109.46892 * 210.00096 * 8 6 4 11 11 H 1.48500 * 109.46818 * 330.00297 * 8 6 4 12 12 C 1.46498 * 120.00364 * 95.91094 * 3 2 1 13 13 H 1.09002 * 109.47353 * 177.14974 * 12 3 2 14 14 C 1.53000 * 109.47076 * 57.15137 * 12 3 2 15 15 C 1.53003 * 109.46974 * 297.15177 * 12 3 2 16 16 N 1.46494 * 109.47072 * 304.99672 * 15 12 3 17 17 C 1.34773 * 120.00093 * 179.97438 * 16 15 12 18 18 O 1.21702 * 120.00006 * 0.02562 * 17 16 15 19 19 C 1.46583 * 120.00301 * 180.02562 * 17 16 15 20 20 C 1.36645 * 125.46056 * 180.02562 * 19 17 16 21 21 C 1.37472 * 113.29850 * 179.97438 * 20 19 17 22 22 C 1.33811 * 115.09968 * 359.97438 * 21 20 19 23 23 S 1.70617 * 110.95537 * 359.76500 * 22 21 20 24 24 H 1.09005 * 109.46875 * 60.00216 * 1 2 3 25 25 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47320 * 300.00347 * 1 2 3 27 27 H 1.09000 * 109.47052 * 120.00239 * 2 1 3 28 28 H 1.09002 * 109.47227 * 239.99693 * 2 1 3 29 29 H 0.97001 * 119.99295 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47033 * 179.97438 * 14 12 3 31 31 H 1.09002 * 109.46896 * 300.00117 * 14 12 3 32 32 H 1.09002 * 109.46882 * 59.99956 * 14 12 3 33 33 H 1.09001 * 109.46638 * 64.99831 * 15 12 3 34 34 H 1.08994 * 109.46882 * 185.00010 * 15 12 3 35 35 H 0.97006 * 120.00004 * 0.02562 * 16 15 12 36 36 H 1.08004 * 123.35203 * 359.94076 * 20 19 17 37 37 H 1.08003 * 122.44840 * 180.02562 * 21 20 19 38 38 H 1.08007 * 124.51734 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0674 -1.1797 5 1 1.4233 1.8925 -1.9762 6 6 3.1561 2.9878 -1.3517 7 7 4.1989 2.9695 -0.5487 8 14 3.0553 4.2524 -2.7229 9 1 2.3774 5.4743 -2.2204 10 1 4.4256 4.5985 -3.1788 11 1 2.2827 3.6896 -3.8594 12 6 2.3857 2.0283 1.2619 13 1 2.7712 3.0275 1.0591 14 6 3.4621 1.1994 1.9656 15 6 1.1518 2.1304 2.1608 16 7 0.0790 2.8210 1.4409 17 6 -1.1108 3.0263 2.0397 18 8 -1.2939 2.6384 3.1786 19 6 -2.1845 3.7169 1.3192 20 6 -3.4289 3.9838 1.8166 21 6 -4.2403 4.6451 0.9254 22 6 -3.6816 4.9119 -0.2609 23 16 -2.0747 4.3417 -0.3206 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8932 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 4.9151 3.6125 -0.6692 30 1 3.7358 1.6811 2.9043 31 1 3.0766 0.2002 2.1684 32 1 4.3412 1.1267 1.3252 33 1 0.8190 1.1296 2.4361 34 1 1.4038 2.6901 3.0615 35 1 0.2248 3.1299 0.5330 36 1 -3.7439 3.7027 2.8107 37 1 -5.2542 4.9292 1.1655 38 1 -4.1803 5.4232 -1.0711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151663419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:37 Heat of formation + Delta-G solvation = 12.893985 kcal Electronic energy + Delta-G solvation = -20750.849079 eV Core-core repulsion = 17720.660771 eV Total energy + Delta-G solvation = -3030.188308 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.35382 -37.52769 -36.70340 -33.66992 -31.91287 -31.19969 -29.65948 -28.18091 -26.00313 -24.19079 -23.93180 -21.75870 -20.86467 -19.46520 -18.98507 -18.12154 -16.87665 -15.93468 -15.40442 -15.13728 -14.85576 -14.43709 -14.15419 -13.60468 -13.10563 -12.88553 -12.70604 -12.67108 -12.37108 -12.21942 -12.05104 -11.83947 -11.53630 -11.07767 -10.97730 -10.84883 -10.79572 -10.67807 -10.29566 -10.08171 -9.65987 -9.62560 -9.45699 -8.85765 -8.54850 -8.53043 -8.37081 -6.67802 -5.90270 -3.40323 0.64251 1.59631 2.01089 2.50468 3.29196 3.38046 3.38666 3.56543 3.71591 4.39882 4.97803 5.20807 5.24596 5.37166 5.39801 5.50916 5.87075 5.99397 6.05891 6.16490 6.23674 6.27087 6.36890 6.37246 6.47551 6.53063 6.59386 6.67128 6.82058 6.91515 7.00887 7.16407 7.45158 7.53875 7.74864 8.08508 8.42026 8.64606 9.13898 9.75193 10.33007 11.15933 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.007046 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.163207 B = 3973.210232 C = 4996.059582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.264 4.264 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.173 3.827 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.102 3.898 16 N -0.695 5.695 17 C 0.579 3.421 18 O -0.550 6.550 19 C -0.255 4.255 20 C -0.070 4.070 21 C -0.151 4.151 22 C -0.246 4.246 23 S 0.223 5.777 24 H 0.047 0.953 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.255 0.745 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.410 0.590 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 2.359 1.291 11.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.394 4.394 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.211 1.211 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.065 3.935 13 H 0.120 0.880 14 C -0.202 4.202 15 C -0.024 4.024 16 N -0.345 5.345 17 C 0.364 3.636 18 O -0.431 6.431 19 C -0.375 4.375 20 C -0.104 4.104 21 C -0.183 4.183 22 C -0.384 4.384 23 S 0.490 5.510 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.247 0.753 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.847 2.199 0.937 10.133 hybrid contribution -1.211 0.876 -0.152 1.503 sum -11.058 3.075 0.785 11.504 Atomic orbital electron populations 1.22431 1.00051 0.99021 1.01454 1.20776 0.91619 0.87443 0.98827 1.43871 1.75903 1.08310 1.02263 1.19106 1.07811 1.18757 0.93685 0.91790 1.25176 0.94491 1.01334 0.97799 1.70003 1.07230 1.36249 1.39713 0.86452 0.77097 0.82061 0.82225 1.21128 1.21708 1.20227 1.20550 0.89018 0.99577 0.84362 0.87967 1.21989 1.00985 0.98135 0.99140 1.22248 0.88974 0.95729 0.95428 1.45878 1.12033 1.57726 1.18827 1.17003 0.81711 0.79235 0.85680 1.90770 1.81787 1.52689 1.17817 1.24875 1.00297 1.12451 0.99922 1.20732 0.91326 0.97313 1.00997 1.19980 1.01820 1.03189 0.93281 1.25368 1.01234 1.08780 1.03004 1.83595 1.08205 1.49335 1.09848 0.93424 0.94771 0.93201 0.94389 0.94032 0.93504 0.94650 0.94921 0.90569 0.92565 0.92726 0.75330 0.83223 0.84166 0.81713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.95 37.15 0.37 -2.74 16 2 C 0.14 2.81 5.75 -4.05 -0.02 2.79 16 3 N -0.58 -12.98 1.88 -165.66 -0.31 -13.29 16 4 C -0.26 -6.47 9.07 -15.06 -0.14 -6.60 16 5 H 0.06 1.58 7.89 -52.48 -0.41 1.17 16 6 C 0.01 0.31 4.86 -17.43 -0.08 0.23 16 7 N -0.89 -23.40 10.90 55.49 0.61 -22.79 16 8 Si 0.89 19.99 29.59 -169.99 -5.03 14.96 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 C 0.17 3.68 1.95 -67.93 -0.13 3.55 16 13 H 0.10 2.48 5.94 -51.93 -0.31 2.18 16 14 C -0.14 -2.88 9.05 37.16 0.34 -2.54 16 15 C 0.10 1.99 4.36 -4.04 -0.02 1.97 16 16 N -0.69 -13.27 4.28 -61.65 -0.26 -13.54 16 17 C 0.58 10.96 7.73 -12.90 -0.10 10.86 16 18 O -0.55 -11.75 16.84 5.19 0.09 -11.66 16 19 C -0.25 -4.09 6.45 -36.79 -0.24 -4.33 16 20 C -0.07 -0.98 10.01 -40.44 -0.40 -1.39 16 21 C -0.15 -1.73 10.15 -41.41 -0.42 -2.16 16 22 C -0.25 -2.79 10.92 29.18 0.32 -2.47 16 23 S 0.22 3.09 22.16 -107.50 -2.38 0.70 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.95 5.32 -51.93 -0.28 0.67 16 27 H 0.04 0.73 6.29 -51.93 -0.33 0.41 16 28 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 29 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.61 6.56 -51.93 -0.34 0.27 16 32 H 0.08 1.73 7.69 -51.93 -0.40 1.33 16 33 H 0.06 1.12 6.98 -51.93 -0.36 0.75 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.41 8.00 6.85 -40.82 -0.28 7.72 16 36 H 0.15 1.98 8.06 -52.48 -0.42 1.56 16 37 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.17 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -27.39 323.87 -8.17 -35.56 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.22 Total: 8.02 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.53 Total: -2.83 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.03 Total: -49.62 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.38 Total: 0.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.39 -8.17 -35.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151663419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.450 kcal (2) G-P(sol) polarization free energy of solvation -27.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds