Wall clock time and date at job start Tue Mar 31 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86794 * 119.99965 * 2 1 4 4 H 1.48505 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47294 * 300.00156 * 3 2 1 6 6 H 1.48504 * 109.47435 * 60.00133 * 3 2 1 7 7 C 1.40020 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99727 * 163.15589 * 7 2 1 9 9 C 1.41552 * 120.00534 * 343.16007 * 7 2 1 10 10 C 1.41185 * 120.98734 * 336.10821 * 9 7 2 11 11 C 1.36556 * 119.14501 * 180.02562 * 10 9 7 12 12 N 1.32094 * 121.26834 * 359.71567 * 11 10 9 13 13 C 1.32536 * 122.21636 * 0.57769 * 12 11 10 14 14 N 1.39084 * 119.65695 * 179.70524 * 13 12 11 15 15 C 1.46497 * 119.99500 * 179.72660 * 14 13 12 16 16 C 1.53003 * 109.46927 * 179.97438 * 15 14 13 17 17 H 1.08998 * 110.81816 * 308.33773 * 16 15 14 18 18 C 1.54891 * 110.75896 * 184.99691 * 16 15 14 19 19 C 1.54259 * 104.19910 * 203.74636 * 18 16 15 20 20 C 1.53877 * 106.59793 * 23.61261 * 19 18 16 21 21 F 1.39905 * 110.03197 * 119.28654 * 20 19 18 22 22 F 1.39902 * 110.03322 * 240.71617 * 20 19 18 23 23 C 1.54261 * 106.59920 * 359.97438 * 20 19 18 24 24 C 1.38747 * 120.68189 * 359.42732 * 13 12 11 25 25 H 0.97003 * 119.99851 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.43306 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.36957 * 179.97438 * 11 10 9 28 28 H 0.97000 * 120.00025 * 359.72484 * 14 13 12 29 29 H 1.09008 * 109.47207 * 60.00286 * 15 14 13 30 30 H 1.08997 * 109.47658 * 299.99865 * 15 14 13 31 31 H 1.09004 * 110.48183 * 85.06677 * 18 16 15 32 32 H 1.09005 * 110.48839 * 322.42854 * 18 16 15 33 33 H 1.09003 * 110.03457 * 264.32567 * 19 18 16 34 34 H 1.08995 * 110.07465 * 142.92078 * 19 18 16 35 35 H 1.08997 * 110.48934 * 95.06520 * 23 20 19 36 36 H 1.08992 * 110.48759 * 217.71245 * 23 20 19 37 37 H 1.07998 * 120.66265 * 180.25108 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8828 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0528 -1.2328 -0.2705 9 6 1.3454 -2.4121 0.3562 10 6 0.1905 -2.3917 1.1680 11 6 -0.4181 -3.5713 1.4886 12 7 0.0500 -4.7258 1.0494 13 6 1.1328 -4.8061 0.2893 14 7 1.5826 -6.0507 -0.1385 15 6 2.7752 -6.1476 -0.9838 16 6 3.0515 -7.6168 -1.3094 17 1 3.0738 -8.2175 -0.4001 18 6 4.3766 -7.7646 -2.0976 19 6 4.2191 -9.0989 -2.8556 20 6 2.7073 -9.3540 -2.9871 21 9 2.3472 -9.4149 -4.3376 22 9 2.3653 -10.5490 -2.3450 23 6 1.9989 -8.1662 -2.3038 24 6 1.8189 -3.6609 -0.0887 25 1 -0.4850 0.8401 0.0004 26 1 -0.2061 -1.4552 1.5316 27 1 -1.3016 -3.5599 2.1098 28 1 1.1066 -6.8545 0.1229 29 1 3.6303 -5.7259 -0.4554 30 1 2.6109 -5.5948 -1.9087 31 1 5.2240 -7.8121 -1.4137 32 1 4.4972 -6.9392 -2.7993 33 1 4.6864 -9.9062 -2.2916 34 1 4.6723 -9.0234 -3.8440 35 1 1.7355 -7.4052 -3.0384 36 1 1.1113 -8.5067 -1.7708 37 1 2.6989 -3.7264 -0.7113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155173213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:35 Heat of formation + Delta-G solvation = -89.509917 kcal Electronic energy + Delta-G solvation = -21411.950996 eV Core-core repulsion = 17823.481735 eV Total energy + Delta-G solvation = -3588.469261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.03712 -47.11241 -38.73755 -37.85882 -34.81290 -33.71537 -30.64025 -30.07802 -28.75238 -27.42891 -25.88786 -24.28732 -21.54600 -21.23341 -20.70921 -20.28615 -17.72816 -17.67946 -16.85518 -16.29287 -15.85311 -15.19236 -14.90733 -14.83520 -14.47130 -14.11613 -13.75472 -13.69136 -13.51073 -13.45393 -13.03086 -12.74562 -12.43890 -12.31366 -11.96408 -11.74279 -11.45938 -11.34361 -11.28654 -11.15283 -10.92337 -10.84762 -10.69820 -10.27706 -9.81900 -9.42932 -8.94768 -7.96905 -7.90369 -6.84131 -6.47626 -4.56195 2.78136 3.03224 3.06173 3.08977 3.34780 3.56716 3.70929 3.86943 3.91438 4.08188 4.21658 4.70466 4.79504 4.91502 4.94047 5.03751 5.16772 5.29867 5.44923 5.55793 5.73436 5.76974 5.79833 5.82595 5.98581 6.11337 6.19971 6.75698 6.89475 6.94516 7.00525 7.26812 7.55308 7.82933 8.03956 8.09169 8.43908 8.69580 8.83196 8.89960 9.77423 10.10942 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.003402 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.925800 B = 8228.445456 C = 8807.239811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.156 3.844 10 C -0.244 4.244 11 C 0.116 3.884 12 N -0.624 5.624 13 C 0.397 3.603 14 N -0.746 5.746 15 C 0.151 3.849 16 C -0.100 4.100 17 H 0.091 0.909 18 C -0.114 4.114 19 C -0.162 4.162 20 C 0.279 3.721 21 F -0.202 7.202 22 F -0.201 7.201 23 C -0.156 4.156 24 C -0.335 4.335 25 H 0.281 0.719 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.389 0.611 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 -11.676 -4.514 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.147 3.853 10 C -0.269 4.269 11 C -0.034 4.034 12 N -0.348 5.348 13 C 0.166 3.834 14 N -0.383 5.383 15 C 0.026 3.974 16 C -0.119 4.119 17 H 0.109 0.891 18 C -0.152 4.152 19 C -0.200 4.200 20 C 0.242 3.758 21 F -0.183 7.183 22 F -0.182 7.182 23 C -0.194 4.194 24 C -0.362 4.362 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.223 0.777 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.862 -12.244 -4.414 14.713 hybrid contribution 0.401 1.105 -0.323 1.219 sum 7.262 -11.139 -4.737 14.116 Atomic orbital electron populations 1.69817 1.07705 1.29293 1.34082 1.25961 0.94724 1.01447 0.91929 0.86247 0.81004 0.80755 0.78643 1.18320 1.19910 1.19587 1.19610 0.97796 0.90870 1.40527 0.90250 1.17605 0.89847 0.91664 0.86150 1.21774 1.01567 0.98065 1.05495 1.21356 0.97314 0.87907 0.96802 1.66742 1.16504 1.29891 1.21621 1.17931 0.90089 0.84550 0.90838 1.44070 1.30819 1.05536 1.57829 1.21037 0.88515 0.93192 0.94675 1.22334 0.93992 0.97399 0.98211 0.89115 1.22334 0.97639 0.96145 0.99040 1.23159 0.92333 1.00603 1.03924 1.21926 0.96042 0.82899 0.74890 1.93011 1.93467 1.96782 1.34991 1.93011 1.93858 1.49836 1.81470 1.23452 0.99659 0.96217 1.00079 1.21124 1.07580 0.92226 1.15294 0.90771 0.85978 0.86467 0.77743 0.92225 0.92361 0.89824 0.89923 0.88829 0.88734 0.87959 0.88768 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.91 10.92 55.55 0.61 -19.30 16 2 C 0.08 1.94 5.20 -17.34 -0.09 1.85 16 3 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -11.96 9.12 -37.65 -0.34 -12.30 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.16 4.16 5.60 -106.56 -0.60 3.56 16 10 C -0.24 -6.41 8.74 -39.07 -0.34 -6.75 16 11 C 0.12 2.83 11.10 -18.05 -0.20 2.63 16 12 N -0.62 -15.22 10.37 -12.82 -0.13 -15.36 16 13 C 0.40 9.14 7.65 -154.97 -1.19 7.96 16 14 N -0.75 -13.23 5.65 -60.47 -0.34 -13.57 16 15 C 0.15 2.11 4.33 -4.04 -0.02 2.09 16 16 C -0.10 -1.04 2.91 -88.63 -0.26 -1.29 16 17 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.11 -0.92 6.28 -25.08 -0.16 -1.08 16 19 C -0.16 -1.32 6.50 -25.62 -0.17 -1.49 16 20 C 0.28 2.99 2.57 -25.61 -0.07 2.92 16 21 F -0.20 -2.48 17.04 2.25 0.04 -2.44 16 22 F -0.20 -2.44 17.04 2.25 0.04 -2.40 16 23 C -0.16 -1.69 5.77 -25.08 -0.14 -1.83 16 24 C -0.34 -8.23 9.12 -38.44 -0.35 -8.58 16 25 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 26 H 0.12 3.25 6.20 -52.49 -0.33 2.93 16 27 H 0.12 2.53 8.06 -52.48 -0.42 2.11 16 28 H 0.39 6.40 8.60 -40.82 -0.35 6.05 16 29 H 0.06 0.85 7.93 -51.92 -0.41 0.44 16 30 H 0.06 0.85 7.77 -51.93 -0.40 0.45 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 33 H 0.09 0.68 8.02 -51.93 -0.42 0.26 16 34 H 0.09 0.68 8.02 -51.93 -0.42 0.27 16 35 H 0.10 1.15 7.91 -51.93 -0.41 0.74 16 36 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 37 H 0.10 2.21 6.71 -52.49 -0.35 1.85 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -29.12 314.68 -8.74 -37.86 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.74 Total: 9.66 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.92 Total: -12.31 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.13 Total: -48.23 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.08 Total: -4.84 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.12 -8.74 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155173213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.649 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds