Wall clock time and date at job start Tue Mar 31 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39812 * 120.40406 * 347.23325 * 3 2 1 5 5 N 1.31601 * 121.00082 * 179.72158 * 4 3 2 6 6 C 1.32516 * 121.95153 * 0.53214 * 5 4 3 7 7 N 1.38044 * 119.65345 * 179.74939 * 6 5 4 8 8 C 1.46500 * 120.00513 * 359.72152 * 7 6 5 9 9 H 1.09000 * 109.35380 * 35.17730 * 8 7 6 10 10 C 1.52957 * 109.41553 * 155.00143 * 8 7 6 11 11 C 1.53234 * 109.40674 * 183.70854 * 10 8 7 12 12 C 1.51265 * 108.53327 * 305.37453 * 11 10 8 13 13 C 1.37880 * 120.84573 * 231.32643 * 12 11 10 14 14 N 1.31511 * 120.00277 * 4.85724 * 13 12 11 15 15 Si 1.86801 * 119.99710 * 184.59296 * 13 12 11 16 16 H 1.48502 * 109.46971 * 180.27236 * 15 13 12 17 17 H 1.48501 * 109.47247 * 300.26805 * 15 13 12 18 18 H 1.48493 * 109.47555 * 60.26882 * 15 13 12 19 19 C 1.51263 * 118.30363 * 51.59750 * 12 11 10 20 20 C 1.52958 * 109.41530 * 275.35673 * 8 7 6 21 21 C 1.40732 * 120.68493 * 359.47102 * 6 5 4 22 22 C 1.43198 * 120.53416 * 180.27846 * 21 6 5 23 23 N 5.93433 * 146.04710 * 167.18967 * 2 1 3 24 24 C 1.39564 * 118.93578 * 0.25691 * 21 6 5 25 25 H 1.07996 * 119.49794 * 359.95534 * 4 3 2 26 26 H 0.96996 * 119.99971 * 179.72704 * 7 6 5 27 27 H 1.08996 * 109.48656 * 63.72708 * 10 8 7 28 28 H 1.09001 * 109.49402 * 303.68989 * 10 8 7 29 29 H 1.09000 * 109.62567 * 185.65440 * 11 10 8 30 30 H 1.08996 * 109.78285 * 65.17749 * 11 10 8 31 31 H 0.97005 * 120.00008 * 354.26556 * 14 13 12 32 32 H 1.08997 * 109.62835 * 68.11496 * 19 12 11 33 33 H 1.09006 * 109.63062 * 188.68674 * 19 12 11 34 34 H 1.08995 * 109.48257 * 296.27166 * 20 8 7 35 35 H 1.08995 * 109.48309 * 56.29823 * 20 8 7 36 36 H 1.08001 * 120.88672 * 180.02562 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2761 -1.1751 0.2665 5 7 4.5920 -1.1891 0.2642 6 6 5.3045 -0.0983 0.0219 7 7 6.6832 -0.1659 0.0365 8 6 7.3514 -1.4374 0.3247 9 1 6.7677 -2.2559 -0.0967 10 6 8.7465 -1.4323 -0.3024 11 6 9.4094 -2.7959 -0.0805 12 6 9.3928 -3.1033 1.4005 13 6 10.5459 -3.4763 2.0581 14 7 11.6959 -3.4765 1.4202 15 14 10.4755 -3.9744 3.8571 16 1 11.8403 -4.3220 4.3282 17 1 9.9464 -2.8450 4.6632 18 1 9.5842 -5.1521 4.0102 19 6 8.0778 -2.9970 2.1404 20 6 7.4642 -1.6207 1.8391 21 6 4.6702 1.1269 -0.2558 22 6 5.4433 2.3022 -0.5229 23 7 6.0585 3.2319 -0.7349 24 6 3.2756 1.1779 -0.2670 25 1 2.7349 -2.0864 0.4737 26 1 7.2097 0.6285 -0.1441 27 1 9.3514 -0.6541 0.1628 28 1 8.6639 -1.2381 -1.3718 29 1 10.4392 -2.7646 -0.4365 30 1 8.8587 -3.5661 -0.6204 31 1 11.7223 -3.2952 0.4677 32 1 7.4031 -3.7836 1.8027 33 1 8.2515 -3.0949 3.2120 34 1 8.0994 -0.8380 2.2536 35 1 6.4726 -1.5598 2.2875 36 1 2.7562 2.1013 -0.4767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:13 Heat of formation + Delta-G solvation = 81.211335 kcal Electronic energy + Delta-G solvation = -20706.608467 eV Core-core repulsion = 17576.231421 eV Total energy + Delta-G solvation = -3130.377046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86623 -37.95699 -36.96285 -36.57426 -34.84655 -32.99771 -32.27721 -30.42054 -29.76823 -26.96103 -25.13178 -23.85369 -22.10405 -21.46814 -20.62873 -19.67877 -18.20341 -17.37931 -16.99640 -16.52251 -15.28290 -15.19488 -14.55665 -14.03311 -13.83975 -13.76944 -13.67112 -13.56348 -13.42941 -13.15619 -13.05297 -13.00741 -12.45932 -12.41833 -12.18485 -11.61168 -11.20528 -10.92569 -10.64303 -10.55153 -10.26644 -10.19391 -10.11941 -9.82523 -9.61201 -9.35130 -8.61924 -8.40359 -7.94705 -6.51370 -4.11974 0.39046 0.62037 2.35511 2.48110 2.56219 2.92022 3.03958 3.35874 3.37761 3.52968 3.57037 3.70923 3.80428 4.14916 4.35982 4.40770 4.60790 5.06510 5.14911 5.27977 5.39013 5.51832 5.62310 5.85338 5.95642 6.26330 6.37054 6.46873 6.56933 6.64139 6.75521 6.90620 7.01222 7.08154 7.19321 7.24820 7.26765 7.30500 7.47509 7.83180 7.94984 8.21614 8.77415 9.50877 10.86081 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.004124 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.257800 B = 6788.145125 C = 7513.500726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.272 3.728 3 C -0.168 4.168 4 C 0.247 3.753 5 N -0.526 5.526 6 C 0.478 3.522 7 N -0.684 5.684 8 C 0.156 3.844 9 H 0.092 0.908 10 C -0.116 4.116 11 C 0.007 3.993 12 C -0.572 4.572 13 C 0.036 3.964 14 N -0.906 5.906 15 Si 1.061 2.939 16 H -0.287 1.287 17 H -0.286 1.286 18 H -0.284 1.284 19 C -0.002 4.002 20 C -0.113 4.113 21 C -0.168 4.168 22 C 0.261 3.739 23 N -0.416 5.416 24 C 0.071 3.929 25 H 0.173 0.827 26 H 0.407 0.593 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.010 0.990 31 H 0.272 0.728 32 H 0.018 0.982 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 5.791 -2.564 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.044 4.044 3 C -0.178 4.178 4 C 0.079 3.921 5 N -0.242 5.242 6 C 0.234 3.766 7 N -0.305 5.305 8 C 0.053 3.947 9 H 0.110 0.890 10 C -0.154 4.154 11 C -0.032 4.032 12 C -0.591 4.591 13 C -0.169 4.169 14 N -0.542 5.542 15 Si 0.890 3.110 16 H -0.213 1.213 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.040 4.040 20 C -0.152 4.152 21 C -0.180 4.180 22 C -0.054 4.054 23 N -0.092 5.092 24 C 0.041 3.959 25 H 0.190 0.810 26 H 0.243 0.757 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.060 5.843 -1.418 14.378 hybrid contribution -0.960 1.310 -1.467 2.189 sum -14.020 7.154 -2.885 16.002 Atomic orbital electron populations 1.81283 1.11919 1.07024 1.10351 1.25198 0.91978 0.94067 0.93121 1.16416 0.85608 0.96449 1.19365 1.22925 0.88311 0.96209 0.84682 1.67590 1.07353 1.27033 1.22242 1.18496 0.86309 0.87198 0.84637 1.45599 1.01563 1.14637 1.68733 1.21298 0.93408 0.82715 0.97229 0.89042 1.21925 0.94175 1.02369 0.96962 1.19371 0.96468 0.90464 0.96853 1.21020 0.94420 1.49634 0.93994 1.25767 0.91478 0.93576 1.06103 1.70839 1.26023 1.45616 1.11684 0.83614 0.75685 0.76847 0.74820 1.21347 1.21221 1.21014 1.19580 0.96441 0.91740 0.96285 1.22006 0.98715 1.01089 0.93359 1.15981 0.92013 0.88839 1.21185 1.25145 0.93964 0.92869 0.93469 1.81259 1.07630 1.10142 1.10209 1.21290 0.90821 0.97389 0.86373 0.80969 0.75650 0.92701 0.94508 0.94117 0.97131 0.91567 0.96398 0.95386 0.93139 0.94033 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.95 18.54 41.84 0.78 -4.18 16 2 C 0.27 2.44 15.36 -22.47 -0.35 2.10 16 3 C -0.17 -1.28 5.75 -106.75 -0.61 -1.89 16 4 C 0.25 2.01 10.90 -17.06 -0.19 1.82 16 5 N -0.53 -5.94 9.13 -11.87 -0.11 -6.05 16 6 C 0.48 5.52 7.46 -155.24 -1.16 4.36 16 7 N -0.68 -9.11 5.12 -53.76 -0.28 -9.39 16 8 C 0.16 2.56 2.35 -67.97 -0.16 2.40 16 9 H 0.09 1.57 7.51 -51.93 -0.39 1.18 16 10 C -0.12 -2.14 5.40 -26.63 -0.14 -2.28 16 11 C 0.01 0.15 5.95 -27.49 -0.16 -0.02 16 12 C -0.57 -13.96 5.50 -98.93 -0.54 -14.50 16 13 C 0.04 0.95 5.46 -17.82 -0.10 0.85 16 14 N -0.91 -25.56 13.66 55.43 0.76 -24.81 16 15 Si 1.06 23.76 27.19 -169.99 -4.62 19.14 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.00 -0.05 5.59 -27.26 -0.15 -0.20 16 20 C -0.11 -2.06 5.53 -26.41 -0.15 -2.20 16 21 C -0.17 -1.61 5.76 -106.54 -0.61 -2.22 16 22 C 0.26 2.90 14.09 -22.52 -0.32 2.59 16 23 N -0.42 -5.53 18.53 41.79 0.77 -4.75 16 24 C 0.07 0.52 9.62 -38.46 -0.37 0.15 16 25 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 26 H 0.41 5.16 7.41 -40.82 -0.30 4.86 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.98 5.81 -51.93 -0.30 0.68 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.27 7.56 6.36 -40.82 -0.26 7.30 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.03 0.59 5.24 -51.93 -0.27 0.32 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 315.48 15.07 4.75 4.75 Total: -1.00 -28.59 315.48 -6.66 -35.25 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.70 Total: -0.93 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -5.01 Total: -9.04 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 1.92 Total: -49.17 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.62 Total: 19.14 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.59 -6.66 -35.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.460 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds