Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40586 * 119.79978 * 248.42497 * 3 2 1 5 5 C 1.35900 * 120.87296 * 180.02562 * 4 3 2 6 6 C 1.40350 * 119.95038 * 359.97438 * 5 4 3 7 7 N 1.34057 * 121.73662 * 180.02562 * 6 5 4 8 8 C 1.31218 * 120.54646 * 179.97438 * 7 6 5 9 9 N 1.32309 * 123.01317 * 0.02562 * 8 7 6 10 10 C 1.32652 * 121.45276 * 0.02562 * 9 8 7 11 11 N 1.37745 * 120.91565 * 179.97438 * 10 9 8 12 12 C 1.46498 * 119.99790 * 0.28220 * 11 10 9 13 13 C 1.52996 * 109.47059 * 179.72161 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46710 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47158 * 119.99784 * 19 17 15 22 22 H 1.48502 * 109.46769 * 240.00242 * 19 17 15 23 23 C 1.41735 * 119.63042 * 0.26097 * 6 5 4 24 24 C 1.38882 * 119.80159 * 68.44419 * 3 2 1 25 25 H 1.08004 * 119.56021 * 359.97438 * 4 3 2 26 26 H 1.07998 * 120.03010 * 179.97438 * 5 4 3 27 27 H 1.08003 * 118.49601 * 179.97438 * 8 7 6 28 28 H 0.97001 * 119.99764 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.46963 * 299.71957 * 12 11 10 30 30 H 1.08994 * 109.47567 * 59.72109 * 12 11 10 31 31 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 32 32 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 33 33 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 34 34 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 35 35 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 36 36 H 1.08006 * 120.35307 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2665 0.4496 1.1345 5 6 4.6252 0.4600 1.1580 6 6 5.3488 0.0181 0.0395 7 7 6.6893 0.0125 0.0240 8 6 7.3422 -0.4062 -1.0344 9 7 6.7386 -0.8394 -2.1291 10 6 5.4158 -0.8756 -2.2220 11 7 4.7989 -1.3283 -3.3674 12 6 5.6052 -1.7841 -4.5024 13 6 4.6816 -2.2375 -5.6347 14 6 5.5237 -2.7130 -6.8204 15 6 4.6139 -3.1602 -7.9354 16 1 3.5423 -3.1099 -7.8110 17 6 5.1496 -3.6325 -9.1147 18 7 6.4546 -3.6933 -9.2664 19 14 4.0218 -4.1862 -10.4972 20 1 2.6069 -4.0192 -10.0786 21 1 4.2811 -3.3645 -11.7067 22 1 4.2811 -5.6157 -10.8050 23 6 4.6544 -0.4318 -1.1113 24 6 3.2585 -0.4418 -1.1209 25 1 2.7159 0.7914 1.9985 26 1 5.1480 0.8081 2.0366 27 1 8.4220 -0.3961 -1.0111 28 1 3.8306 -1.3494 -3.4207 29 1 6.2348 -0.9661 -4.8526 30 1 6.2336 -2.6181 -4.1901 31 1 4.0520 -3.0556 -5.2845 32 1 4.0531 -1.4035 -5.9471 33 1 6.1529 -1.8948 -7.1704 34 1 6.1523 -3.5469 -6.5082 35 1 6.8315 -4.0252 -10.0963 36 1 2.7211 -0.7859 -1.9923 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157638021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = 82.564624 kcal Electronic energy + Delta-G solvation = -19864.171067 eV Core-core repulsion = 16733.852704 eV Total energy + Delta-G solvation = -3130.318363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52543 -38.46314 -37.22588 -36.37312 -34.32611 -32.83865 -32.00783 -31.15599 -30.22888 -26.85870 -25.44185 -24.50127 -23.03983 -22.16136 -20.68024 -20.19925 -18.94429 -17.62390 -16.61546 -16.17968 -15.86478 -15.61754 -14.96986 -14.81175 -14.69177 -14.48344 -14.09690 -14.07331 -13.94277 -13.12633 -12.91527 -12.70712 -12.40528 -12.08314 -12.06822 -11.86358 -11.36743 -10.98136 -10.94909 -10.81098 -10.62406 -9.99835 -9.66758 -9.63284 -9.38796 -9.25716 -9.18810 -8.45077 -7.98028 -6.09566 -4.12987 -0.04699 0.37189 1.58209 2.26950 2.35116 2.83295 3.19141 3.25212 3.33276 3.36473 3.49191 3.92493 3.98688 4.01363 4.22676 4.33601 4.38775 4.61639 4.89985 5.01114 5.26696 5.33121 5.37698 5.49122 5.59111 5.60763 5.78727 5.95601 5.97274 6.23356 6.42079 6.46772 6.62112 6.84583 6.93761 7.17067 7.37207 7.53577 7.64383 7.88318 8.19796 8.28801 8.93611 9.51990 11.01604 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.003173 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.440627 B = 8821.024955 C =10208.701301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.256 3.744 3 C -0.057 4.057 4 C -0.038 4.038 5 C -0.111 4.111 6 C 0.217 3.783 7 N -0.571 5.571 8 C 0.369 3.631 9 N -0.596 5.596 10 C 0.484 3.516 11 N -0.680 5.680 12 C 0.119 3.881 13 C -0.125 4.125 14 C 0.026 3.974 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.212 4.212 24 C 0.000 4.000 25 H 0.139 0.861 26 H 0.147 0.853 27 H 0.196 0.804 28 H 0.411 0.589 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 8.096 20.288 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.059 4.059 3 C -0.062 4.062 4 C -0.061 4.061 5 C -0.131 4.131 6 C 0.089 3.911 7 N -0.292 5.292 8 C 0.079 3.921 9 N -0.324 5.324 10 C 0.227 3.773 11 N -0.307 5.307 12 C -0.003 4.003 13 C -0.163 4.163 14 C -0.012 4.012 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.221 4.221 24 C -0.024 4.024 25 H 0.157 0.843 26 H 0.165 0.835 27 H 0.213 0.787 28 H 0.248 0.752 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.384 8.007 20.060 21.730 hybrid contribution -1.300 -0.407 -1.012 1.697 sum -3.684 7.600 19.048 20.836 Atomic orbital electron populations 1.81287 1.11961 1.08857 1.07196 1.25597 0.92483 0.93755 0.94049 1.15772 0.84428 1.09214 0.96766 1.20830 0.94008 0.94936 0.96340 1.20547 0.92761 1.01791 0.97989 1.18889 0.90084 0.90633 0.91483 1.68871 1.06707 1.24228 1.29413 1.24732 1.00857 0.84502 0.82025 1.68123 1.08001 1.26991 1.29273 1.18783 0.89096 0.84183 0.85206 1.45106 1.09748 1.63153 1.12695 1.21884 0.94295 0.99912 0.84234 1.21956 0.98618 1.00179 0.95555 1.19010 0.94939 0.96616 0.90600 1.21218 0.93034 1.42789 0.99234 0.92602 1.25019 0.95023 0.95709 0.98617 1.69963 1.10328 1.46576 1.26283 0.86533 0.80936 0.78389 0.82126 1.19753 1.20939 1.20943 1.18859 0.94474 1.11407 0.97368 1.21060 0.92275 0.92462 0.96603 0.84294 0.83489 0.78742 0.75160 0.90822 0.90832 0.92597 0.92594 0.96149 0.96156 0.92900 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.11 18.54 41.84 0.78 -4.33 16 2 C 0.26 2.50 15.30 -22.47 -0.34 2.16 16 3 C -0.06 -0.47 5.73 -106.85 -0.61 -1.08 16 4 C -0.04 -0.26 9.64 -39.53 -0.38 -0.64 16 5 C -0.11 -0.88 9.97 -39.63 -0.40 -1.27 16 6 C 0.22 2.32 6.62 -84.77 -0.56 1.76 16 7 N -0.57 -6.58 10.44 -12.59 -0.13 -6.71 16 8 C 0.37 4.14 12.22 -92.20 -1.13 3.02 16 9 N -0.60 -7.84 9.67 -13.52 -0.13 -7.97 16 10 C 0.48 5.97 7.55 -154.99 -1.17 4.80 16 11 N -0.68 -8.16 5.62 -59.95 -0.34 -8.50 16 12 C 0.12 1.77 5.73 -4.04 -0.02 1.75 16 13 C -0.13 -2.21 5.27 -26.73 -0.14 -2.35 16 14 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 19 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.21 -2.26 5.75 -106.70 -0.61 -2.87 16 24 C 0.00 0.00 9.26 -38.84 -0.36 -0.36 16 25 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 26 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 27 H 0.20 1.55 8.06 -52.48 -0.42 1.12 16 28 H 0.41 4.00 6.72 -40.82 -0.27 3.72 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.14 0.95 6.58 -52.48 -0.35 0.60 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -31.58 323.36 -9.48 -41.05 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -3.97 Total: -1.62 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -6.28 Total: -7.53 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.91 Total: -52.74 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.58 -9.48 -41.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.619 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds