Wall clock time and date at job start Tue Mar 31 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40586 * 119.79978 * 248.42497 * 3 2 1 5 5 C 1.35900 * 120.87296 * 180.02562 * 4 3 2 6 6 C 1.40350 * 119.95038 * 359.97438 * 5 4 3 7 7 N 1.34057 * 121.73662 * 180.02562 * 6 5 4 8 8 C 1.31218 * 120.54646 * 179.97438 * 7 6 5 9 9 N 1.32309 * 123.01317 * 0.02562 * 8 7 6 10 10 C 1.32652 * 121.45276 * 0.02562 * 9 8 7 11 11 N 1.37745 * 120.91565 * 179.97438 * 10 9 8 12 12 C 1.46498 * 119.99790 * 0.28220 * 11 10 9 13 13 C 1.52996 * 109.47059 * 179.72161 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46710 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47158 * 119.99784 * 19 17 15 22 22 H 1.48502 * 109.46769 * 240.00242 * 19 17 15 23 23 C 1.41735 * 119.63042 * 0.26097 * 6 5 4 24 24 C 1.38882 * 119.80159 * 68.44419 * 3 2 1 25 25 H 1.08004 * 119.56021 * 359.97438 * 4 3 2 26 26 H 1.07998 * 120.03010 * 179.97438 * 5 4 3 27 27 H 1.08003 * 118.49601 * 179.97438 * 8 7 6 28 28 H 0.97001 * 119.99764 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.46963 * 299.71957 * 12 11 10 30 30 H 1.08994 * 109.47567 * 59.72109 * 12 11 10 31 31 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 32 32 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 33 33 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 34 34 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 35 35 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 36 36 H 1.08006 * 120.35307 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2665 0.4496 1.1345 5 6 4.6252 0.4600 1.1580 6 6 5.3488 0.0181 0.0395 7 7 6.6893 0.0125 0.0240 8 6 7.3422 -0.4062 -1.0344 9 7 6.7386 -0.8394 -2.1291 10 6 5.4158 -0.8756 -2.2220 11 7 4.7989 -1.3283 -3.3674 12 6 5.6052 -1.7841 -4.5024 13 6 4.6816 -2.2375 -5.6347 14 6 5.5237 -2.7130 -6.8204 15 6 4.6139 -3.1602 -7.9354 16 1 3.5423 -3.1099 -7.8110 17 6 5.1496 -3.6325 -9.1147 18 7 6.4546 -3.6933 -9.2664 19 14 4.0218 -4.1862 -10.4972 20 1 2.6069 -4.0192 -10.0786 21 1 4.2811 -3.3645 -11.7067 22 1 4.2811 -5.6157 -10.8050 23 6 4.6544 -0.4318 -1.1113 24 6 3.2585 -0.4418 -1.1209 25 1 2.7159 0.7914 1.9985 26 1 5.1480 0.8081 2.0366 27 1 8.4220 -0.3961 -1.0111 28 1 3.8306 -1.3494 -3.4207 29 1 6.2348 -0.9661 -4.8526 30 1 6.2336 -2.6181 -4.1901 31 1 4.0520 -3.0556 -5.2845 32 1 4.0531 -1.4035 -5.9471 33 1 6.1529 -1.8948 -7.1704 34 1 6.1523 -3.5469 -6.5082 35 1 6.8315 -4.0252 -10.0963 36 1 2.7211 -0.7859 -1.9923 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:42 Heat of formation + Delta-G solvation = 65.313151 kcal Electronic energy + Delta-G solvation = -19864.919147 eV Core-core repulsion = 16733.852704 eV Total energy + Delta-G solvation = -3131.066443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.32782 -39.24073 -38.25439 -37.20953 -35.89455 -34.27203 -33.02292 -32.18895 -31.22508 -28.45956 -26.24728 -25.64458 -24.37521 -23.01147 -22.21795 -20.99209 -19.79398 -18.63659 -18.35881 -17.16512 -16.68727 -16.66484 -16.51332 -15.83267 -15.74810 -15.60614 -14.94249 -14.90122 -14.73861 -14.29295 -14.00916 -13.94559 -13.72992 -13.62398 -13.02257 -12.83242 -12.67389 -12.55246 -12.41389 -12.33779 -11.73592 -11.60339 -11.49931 -11.18520 -10.55688 -10.46859 -10.17814 -10.13025 -8.84342 -8.20078 -6.30678 -0.80449 -0.35228 0.77566 1.40641 1.41732 1.53479 1.53761 1.57187 1.88113 2.41423 2.43323 2.73035 3.12820 3.14212 3.20732 3.29686 3.49809 3.59736 3.93787 4.13997 4.19593 4.23840 4.34963 4.56546 4.67780 4.75017 4.95969 4.96364 5.01286 5.15288 5.16702 5.30832 5.51432 5.56151 5.72110 5.72237 5.85206 5.97192 6.23434 6.40461 6.51997 6.87136 7.34943 7.38991 8.91857 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.003173 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.440627 B = 8821.024955 C =10208.701301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.282 3.718 3 C -0.051 4.051 4 C -0.021 4.021 5 C -0.110 4.110 6 C 0.196 3.804 7 N -0.578 5.578 8 C 0.358 3.642 9 N -0.623 5.623 10 C 0.474 3.526 11 N -0.677 5.677 12 C 0.139 3.861 13 C -0.108 4.108 14 C 0.026 3.974 15 C -0.541 4.541 16 H 0.063 0.937 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.962 3.038 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.217 4.217 24 C 0.000 4.000 25 H 0.171 0.829 26 H 0.167 0.833 27 H 0.219 0.781 28 H 0.422 0.578 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.065 0.935 33 H -0.004 1.004 34 H -0.005 1.005 35 H 0.263 0.737 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 8.660 21.709 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.033 4.033 3 C -0.056 4.056 4 C -0.044 4.044 5 C -0.129 4.129 6 C 0.069 3.931 7 N -0.298 5.298 8 C 0.069 3.931 9 N -0.352 5.352 10 C 0.218 3.782 11 N -0.307 5.307 12 C 0.016 3.984 13 C -0.146 4.146 14 C -0.011 4.011 15 C -0.579 4.579 16 H 0.081 0.919 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.787 3.213 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.226 4.226 24 C -0.024 4.024 25 H 0.189 0.811 26 H 0.185 0.815 27 H 0.235 0.765 28 H 0.262 0.738 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.995 8.588 21.525 23.517 hybrid contribution -0.786 -0.537 -1.340 1.644 sum -4.781 8.051 20.184 22.251 Atomic orbital electron populations 1.81326 1.13244 1.10365 1.08614 1.25653 0.92419 0.92465 0.92739 1.15829 0.83547 1.09019 0.97173 1.21137 0.93631 0.93031 0.96581 1.20772 0.93091 1.01324 0.97701 1.19333 0.90093 0.91198 0.92467 1.68904 1.07389 1.24132 1.29386 1.25195 1.01940 0.84360 0.81621 1.68117 1.08779 1.27904 1.30406 1.18932 0.89293 0.84440 0.85538 1.44743 1.09967 1.63959 1.12029 1.21357 0.93565 0.99074 0.84398 1.21649 0.98091 1.00702 0.94140 1.18904 0.94833 0.94899 0.92498 1.21716 0.93814 1.42262 1.00136 0.91862 1.25947 0.96468 0.95938 1.01473 1.70094 1.12254 1.47783 1.27117 0.85445 0.79335 0.77811 0.78731 1.18483 1.20603 1.20612 1.18851 0.95138 1.11781 0.96806 1.21175 0.91529 0.92234 0.97429 0.81107 0.81528 0.76471 0.73832 0.91973 0.91984 0.91619 0.91618 0.98601 0.98611 0.92804 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.46 18.54 19.00 0.35 -10.11 16 2 C 0.28 4.83 15.30 88.33 1.35 6.18 16 3 C -0.05 -0.69 5.73 -21.31 -0.12 -0.81 16 4 C -0.02 -0.21 9.64 22.30 0.22 0.00 16 5 C -0.11 -1.40 9.97 22.24 0.22 -1.18 16 6 C 0.20 3.85 6.62 40.18 0.27 4.12 16 7 N -0.58 -12.64 10.44 -193.74 -2.02 -14.66 16 8 C 0.36 7.88 12.22 180.90 2.21 10.09 16 9 N -0.62 -16.36 9.67 -196.69 -1.90 -18.26 16 10 C 0.47 11.40 7.55 134.07 1.01 12.41 16 11 N -0.68 -15.77 5.62 -343.59 -1.93 -17.70 16 12 C 0.14 4.19 5.73 86.38 0.49 4.68 16 13 C -0.11 -3.79 5.27 30.59 0.16 -3.63 16 14 C 0.03 1.29 4.97 29.85 0.15 1.44 16 15 C -0.54 -29.28 9.11 25.60 0.23 -29.05 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 18 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 19 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 C -0.22 -4.31 5.75 -21.21 -0.12 -4.43 16 24 C 0.00 0.00 9.26 22.75 0.21 0.21 16 25 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 26 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 27 H 0.22 3.35 8.06 -2.91 -0.02 3.32 16 28 H 0.42 7.60 6.72 -92.71 -0.62 6.98 16 29 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.15 1.76 6.58 -2.91 -0.02 1.74 16 Total: -1.00 -68.89 323.36 4.05 -64.84 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 0.50 Total: 5.48 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.74 Total: 0.48 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -5.22 Total: -115.86 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.89 4.05 -64.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.154 kcal (2) G-P(sol) polarization free energy of solvation -68.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds