Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86799 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47012 * 300.00206 * 3 2 1 6 6 H 1.48500 * 109.46910 * 59.99800 * 3 2 1 7 7 C 1.40032 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99768 * 189.60804 * 7 2 1 9 9 C 1.41551 * 119.99909 * 9.61333 * 7 2 1 10 10 C 1.41188 * 120.99216 * 28.05775 * 9 7 2 11 11 C 1.36563 * 119.14270 * 180.02562 * 10 9 7 12 12 N 1.32099 * 121.26884 * 359.72491 * 11 10 9 13 13 C 1.32531 * 122.21487 * 0.57044 * 12 11 10 14 14 N 1.39084 * 119.65659 * 179.70818 * 13 12 11 15 15 C 1.46490 * 120.00143 * 185.78902 * 14 13 12 16 16 C 1.50696 * 115.55287 * 65.36790 * 15 14 13 17 17 C 1.38605 * 120.07732 * 29.14834 * 16 15 14 18 18 C 1.38884 * 117.97343 * 180.02562 * 17 16 15 19 19 C 1.38612 * 117.96478 * 0.02562 * 18 17 16 20 20 N 1.31929 * 119.84774 * 359.97438 * 19 18 17 21 21 N 1.28344 * 122.18395 * 0.02562 * 20 19 18 22 22 C 1.53007 * 117.50028 * 211.03976 * 15 14 13 23 23 C 1.53006 * 117.50040 * 279.69808 * 15 14 13 24 24 C 1.38745 * 120.68399 * 359.43150 * 13 12 11 25 25 H 0.96999 * 120.00226 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.42853 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.36665 * 180.02562 * 11 10 9 28 28 H 0.97005 * 119.99483 * 5.78193 * 14 13 12 29 29 H 1.07997 * 121.01521 * 0.04505 * 17 16 15 30 30 H 1.08000 * 121.02152 * 179.72327 * 18 17 16 31 31 H 1.08003 * 120.07402 * 180.02562 * 19 18 17 32 32 H 1.08996 * 117.49680 * 215.00479 * 22 15 14 33 33 H 1.09002 * 117.49415 * 0.02562 * 22 15 14 34 34 H 1.09002 * 117.49344 * 359.97374 * 23 15 14 35 35 H 1.08997 * 117.50476 * 144.97325 * 23 15 14 36 36 H 1.08001 * 120.66263 * 180.29942 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0762 -1.2191 0.1567 9 6 1.3148 -2.4301 -0.2036 10 6 0.1228 -2.4702 -0.9592 11 6 -0.5151 -3.6653 -1.1320 12 7 -0.0352 -4.7803 -0.6110 13 6 1.0757 -4.8017 0.1114 14 7 1.5299 -6.0053 0.6399 15 6 2.6833 -6.0200 1.5429 16 6 2.4832 -5.3238 2.8643 17 6 1.2202 -5.2600 3.4316 18 6 1.0856 -4.6074 4.6502 19 6 2.2226 -4.0598 5.2233 20 7 3.3853 -4.1696 4.6096 21 7 3.5096 -4.7727 3.4835 22 6 3.5774 -7.2615 1.5268 23 6 4.0755 -5.9511 0.9119 24 6 1.7934 -3.6367 0.3411 25 1 -0.4850 0.8400 0.0004 26 1 -0.2793 -1.5676 -1.3950 27 1 -1.4270 -3.7003 -1.7096 28 1 1.0828 -6.8351 0.4106 29 1 0.3668 -5.7044 2.9412 30 1 0.1235 -4.5247 5.1340 31 1 2.1570 -3.5452 6.1706 32 1 4.0208 -7.5747 2.4720 33 1 3.3076 -8.0672 0.8439 34 1 4.1331 -5.8954 -0.1752 35 1 4.8465 -5.4020 1.4523 36 1 2.7012 -3.6553 0.9258 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157720062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = 122.588101 kcal Electronic energy + Delta-G solvation = -21525.688220 eV Core-core repulsion = 18397.105405 eV Total energy + Delta-G solvation = -3128.582814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90480 -38.75803 -37.38949 -34.20532 -33.05412 -32.38579 -31.84144 -30.58170 -27.83949 -25.89767 -24.85832 -24.28699 -22.41357 -21.85172 -21.07359 -20.03331 -17.72125 -17.07031 -16.90054 -16.14089 -15.94496 -15.10964 -14.87056 -14.62192 -14.25825 -14.00916 -13.67827 -13.11595 -12.94161 -12.66052 -12.62647 -12.35939 -11.44046 -11.37125 -11.19703 -11.09332 -10.97164 -10.69536 -10.58260 -10.26888 -10.01038 -9.86239 -9.51877 -9.47463 -9.35852 -8.90677 -7.99597 -7.93262 -6.81429 -6.57958 -4.57556 1.03538 1.10347 2.77417 2.98948 3.04866 3.11139 3.28399 3.50753 3.61816 3.90217 4.19800 4.22827 4.53344 4.71246 4.78992 4.92348 5.07970 5.17116 5.21191 5.30927 5.65217 5.66299 5.76094 6.00283 6.05030 6.16278 6.22093 6.34662 6.41990 6.72025 6.84960 6.97398 7.00588 7.25435 7.51012 7.80359 7.97295 8.04746 8.42190 8.63970 8.83619 8.85379 8.93895 9.67940 10.14797 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.006524 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.708781 B = 4290.770372 C = 5142.566270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.455 4.455 8 H 0.078 0.922 9 C 0.153 3.847 10 C -0.234 4.234 11 C 0.111 3.889 12 N -0.618 5.618 13 C 0.391 3.609 14 N -0.707 5.707 15 C 0.164 3.836 16 C 0.113 3.887 17 C -0.091 4.091 18 C -0.120 4.120 19 C 0.030 3.970 20 N -0.242 5.242 21 N -0.238 5.238 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.317 4.317 25 H 0.280 0.720 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.396 0.604 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -8.317 6.251 10.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.096 0.904 9 C 0.145 3.855 10 C -0.258 4.258 11 C -0.039 4.039 12 N -0.340 5.340 13 C 0.161 3.839 14 N -0.343 5.343 15 C 0.071 3.929 16 C -0.033 4.033 17 C -0.120 4.120 18 C -0.149 4.149 19 C -0.134 4.134 20 N -0.083 5.083 21 N -0.081 5.081 22 C -0.193 4.193 23 C -0.193 4.193 24 C -0.344 4.344 25 H 0.091 0.909 26 H 0.143 0.857 27 H 0.137 0.863 28 H 0.232 0.768 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.186 0.814 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.987 -8.496 6.194 10.930 hybrid contribution -1.281 1.212 0.149 1.770 sum 1.706 -7.284 6.343 9.809 Atomic orbital electron populations 1.69773 1.07515 1.29069 1.35639 1.25935 0.94841 1.01356 0.92022 0.86212 0.80995 0.80694 0.78603 1.18284 1.19591 1.19889 1.19623 0.95751 0.90134 1.43123 0.90357 1.17648 0.90395 0.91698 0.85753 1.21871 1.00450 0.97976 1.05541 1.21370 0.97502 0.88158 0.96846 1.66702 1.15456 1.31507 1.20381 1.17855 0.90088 0.84690 0.91246 1.43293 1.33097 1.06807 1.51138 1.18143 0.85712 1.01697 0.87346 1.22039 0.91079 0.94706 0.95485 1.22125 0.98792 0.96659 0.94465 1.22362 1.00573 0.96239 0.95702 1.24199 0.90304 0.97691 1.01208 1.72978 1.23199 1.09738 1.02397 1.72764 1.28036 1.04898 1.02382 1.23314 1.01138 0.91459 1.03400 1.23440 0.96117 0.98532 1.01211 1.21277 1.05590 0.92987 1.14519 0.90906 0.85667 0.86322 0.76823 0.83595 0.83543 0.81442 0.88034 0.87849 0.87874 0.86964 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.47 10.80 55.55 0.60 -19.87 16 2 C 0.08 1.94 5.31 -17.34 -0.09 1.85 16 3 Si 0.91 18.96 29.57 -169.99 -5.03 13.94 16 4 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.45 -12.31 9.13 -37.65 -0.34 -12.65 16 8 H 0.08 2.09 7.86 -52.49 -0.41 1.68 16 9 C 0.15 4.15 5.58 -106.56 -0.59 3.56 16 10 C -0.23 -6.11 8.71 -39.07 -0.34 -6.45 16 11 C 0.11 2.65 11.10 -18.04 -0.20 2.45 16 12 N -0.62 -14.57 10.37 -12.82 -0.13 -14.70 16 13 C 0.39 8.82 7.44 -154.97 -1.15 7.67 16 14 N -0.71 -12.58 4.98 -48.86 -0.24 -12.82 16 15 C 0.16 2.63 1.65 -132.97 -0.22 2.41 16 16 C 0.11 1.94 5.11 -82.41 -0.42 1.52 16 17 C -0.09 -1.46 9.52 -39.21 -0.37 -1.83 16 18 C -0.12 -1.64 10.21 -39.20 -0.40 -2.04 16 19 C 0.03 0.43 11.31 -17.37 -0.20 0.23 16 20 N -0.24 -4.21 11.50 30.55 0.35 -3.86 16 21 N -0.24 -4.32 10.49 33.59 0.35 -3.97 16 22 C -0.15 -1.91 10.16 -26.69 -0.27 -2.19 16 23 C -0.15 -2.32 9.35 -26.69 -0.25 -2.57 16 24 C -0.32 -7.92 8.70 -38.44 -0.33 -8.25 16 25 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 26 H 0.13 3.34 6.24 -52.49 -0.33 3.02 16 27 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 28 H 0.40 6.28 8.95 -40.82 -0.37 5.91 16 29 H 0.15 2.26 7.75 -52.49 -0.41 1.85 16 30 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 35 H 0.11 1.74 7.57 -51.93 -0.39 1.35 16 36 H 0.10 2.51 5.95 -52.49 -0.31 2.19 16 LS Contribution 313.54 15.07 4.72 4.72 Total: -1.00 -30.49 313.54 -8.45 -38.94 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -3.89 Total: 13.92 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -5.19 Total: -16.29 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.93 Total: -55.22 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.49 -8.45 -38.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157720062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.528 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds