Wall clock time and date at job start Tue Mar 31 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48504 * 109.46830 * 270.00047 * 3 2 1 5 5 H 1.48498 * 109.46999 * 29.99556 * 3 2 1 6 6 H 1.48495 * 109.47150 * 150.00135 * 3 2 1 7 7 C 1.40017 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99897 * 190.03481 * 7 2 1 9 9 C 1.41548 * 120.00489 * 10.03897 * 7 2 1 10 10 C 1.41181 * 120.99285 * 28.21075 * 9 7 2 11 11 C 1.36559 * 119.14995 * 179.97438 * 10 9 7 12 12 N 1.32096 * 121.26648 * 0.02562 * 11 10 9 13 13 C 1.32533 * 122.21539 * 359.97438 * 12 11 10 14 14 N 1.39078 * 119.65493 * 179.97438 * 13 12 11 15 15 C 1.46502 * 119.99844 * 185.68930 * 14 13 12 16 16 C 1.50699 * 115.55304 * 279.38612 * 15 14 13 17 17 N 1.31788 * 119.12098 * 144.95385 * 16 15 14 18 18 C 1.32336 * 120.81518 * 179.75942 * 17 16 15 19 19 C 1.38595 * 119.10668 * 0.50727 * 18 17 16 20 20 C 1.38599 * 118.39721 * 359.75141 * 19 18 17 21 21 N 1.31794 * 119.11927 * 325.22690 * 16 15 14 22 22 C 1.53010 * 117.49473 * 133.67988 * 15 14 13 23 23 C 1.52998 * 117.49478 * 65.06063 * 15 14 13 24 24 C 1.38746 * 120.68750 * 0.02562 * 13 12 11 25 25 H 0.97004 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.42845 * 359.96329 * 10 9 7 27 27 H 1.07999 * 119.36907 * 180.02562 * 11 10 9 28 28 H 0.96998 * 120.00377 * 5.69188 * 14 13 12 29 29 H 1.08004 * 120.44624 * 180.23382 * 18 17 16 30 30 H 1.07997 * 120.80292 * 179.72268 * 19 18 17 31 31 H 1.08004 * 120.44981 * 179.97438 * 20 19 18 32 32 H 1.08999 * 117.49780 * 0.02562 * 22 15 14 33 33 H 1.08997 * 117.49220 * 145.02448 * 22 15 14 34 34 H 1.09007 * 117.49670 * 214.97249 * 23 15 14 35 35 H 1.09000 * 117.50580 * 359.97438 * 23 15 14 36 36 H 1.07999 * 120.66488 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5390 1.4402 0.7000 7 6 2.0075 -1.2126 0.0005 8 1 3.0752 -1.2197 0.1635 9 6 1.3161 -2.4292 -0.2126 10 6 0.1308 -2.4672 -0.9786 11 6 -0.5055 -3.6617 -1.1608 12 7 -0.0332 -4.7774 -0.6343 13 6 1.0743 -4.8018 0.0932 14 7 1.5234 -6.0068 0.6227 15 6 2.6741 -6.0250 1.5293 16 6 4.0257 -5.9665 0.8655 17 7 5.0037 -5.3118 1.4585 18 6 6.2051 -5.2430 0.9078 19 6 6.4236 -5.8619 -0.3128 20 6 5.3692 -6.5363 -0.9081 21 7 4.1967 -6.5668 -0.2953 22 6 2.5509 -6.8525 2.8105 23 6 2.5197 -5.3244 2.8807 24 6 1.7899 -3.6374 0.3330 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2678 -1.5631 -1.4149 27 1 -1.4122 -3.6949 -1.7465 28 1 1.0749 -6.8353 0.3917 29 1 7.0033 -4.7080 1.4009 30 1 7.3920 -5.8192 -0.7890 31 1 5.5025 -7.0300 -1.8594 32 1 1.6140 -7.3836 2.9785 33 1 3.4477 -7.3547 3.1732 34 1 3.3960 -4.8214 3.2898 35 1 1.5623 -4.8495 3.0951 36 1 2.6925 -3.6578 0.9255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161317635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:19 Heat of formation + Delta-G solvation = 116.615257 kcal Electronic energy + Delta-G solvation = -21361.673661 eV Core-core repulsion = 18232.831845 eV Total energy + Delta-G solvation = -3128.841816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97386 -38.63676 -37.21360 -34.12984 -33.58767 -32.30311 -31.62771 -30.50109 -27.75222 -25.82154 -24.81805 -24.38058 -22.36929 -21.75367 -20.96207 -19.99621 -17.71348 -17.23424 -17.01882 -15.93621 -15.60540 -15.10044 -14.84789 -14.56432 -14.45693 -14.02329 -13.59640 -13.42422 -12.89648 -12.73721 -12.47182 -12.27190 -11.35479 -11.30663 -11.17819 -10.95173 -10.81017 -10.69428 -10.64126 -10.41922 -10.18536 -9.73566 -9.44009 -9.23554 -9.05564 -8.95517 -7.88819 -7.84672 -6.74083 -6.45398 -4.51120 0.97578 1.23223 2.83814 3.06003 3.09312 3.10367 3.36445 3.57418 3.67969 3.92780 4.00374 4.33066 4.41191 4.65833 4.78219 5.03838 5.15113 5.16308 5.19630 5.31861 5.70413 5.76520 5.83454 5.88994 6.14474 6.24967 6.40573 6.48944 6.82612 6.94191 7.04957 7.07519 7.15008 7.32883 7.60352 7.88655 8.09209 8.12208 8.30187 8.50942 8.75039 8.90232 8.94631 9.80112 10.21592 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.005914 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.830457 B = 4733.022057 C = 5553.227153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.075 0.925 9 C 0.154 3.846 10 C -0.237 4.237 11 C 0.112 3.888 12 N -0.617 5.617 13 C 0.398 3.602 14 N -0.695 5.695 15 C 0.174 3.826 16 C 0.357 3.643 17 N -0.511 5.511 18 C 0.149 3.851 19 C -0.241 4.241 20 C 0.147 3.853 21 N -0.498 5.498 22 C -0.156 4.156 23 C -0.140 4.140 24 C -0.320 4.320 25 H 0.280 0.720 26 H 0.124 0.876 27 H 0.119 0.881 28 H 0.397 0.603 29 H 0.167 0.833 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.054 -8.550 2.533 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.093 0.907 9 C 0.146 3.854 10 C -0.261 4.261 11 C -0.038 4.038 12 N -0.340 5.340 13 C 0.168 3.832 14 N -0.329 5.329 15 C 0.081 3.919 16 C 0.089 3.911 17 N -0.224 5.224 18 C -0.018 4.018 19 C -0.263 4.263 20 C -0.020 4.020 21 N -0.211 5.211 22 C -0.195 4.195 23 C -0.179 4.179 24 C -0.346 4.346 25 H 0.091 0.909 26 H 0.142 0.858 27 H 0.136 0.864 28 H 0.232 0.768 29 H 0.184 0.816 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.588 -9.113 2.878 12.848 hybrid contribution 1.630 1.449 -0.617 2.267 sum 10.218 -7.664 2.261 12.971 Atomic orbital electron populations 1.69778 1.07465 1.29057 1.35710 1.25908 0.94819 1.01191 0.92146 0.86271 0.80410 0.80519 0.79260 1.19315 1.20166 1.18642 1.19519 0.95607 0.90196 1.43569 0.90680 1.17635 0.90357 0.91669 0.85757 1.21827 1.00698 0.97884 1.05732 1.21371 0.97479 0.88190 0.96713 1.66700 1.15718 1.31440 1.20100 1.17862 0.89856 0.84706 0.90749 1.43064 1.31044 1.06665 1.52168 1.17928 0.81807 1.08366 0.83813 1.22527 0.93737 0.87381 0.87491 1.68093 1.00768 1.16946 1.36633 1.23182 0.93950 0.92773 0.91857 1.22851 1.02108 1.02446 0.98857 1.23238 0.87621 0.92704 0.98425 1.68171 1.23898 1.19721 1.09344 1.23349 1.03566 0.95542 0.96994 1.23367 1.04805 0.93602 0.96116 1.21262 1.05939 0.92997 1.14438 0.90903 0.85804 0.86374 0.76789 0.81617 0.83809 0.81825 0.87632 0.88396 0.86852 0.87497 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.80 10.83 55.55 0.60 -20.20 16 2 C 0.08 1.98 5.30 -17.35 -0.09 1.89 16 3 Si 0.91 18.98 29.57 -169.99 -5.03 13.95 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.52 9.12 -37.65 -0.34 -12.86 16 8 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 9 C 0.15 4.30 5.58 -106.56 -0.59 3.70 16 10 C -0.24 -6.41 8.71 -39.07 -0.34 -6.75 16 11 C 0.11 2.83 11.10 -18.04 -0.20 2.63 16 12 N -0.62 -15.59 10.37 -12.82 -0.13 -15.72 16 13 C 0.40 9.71 7.58 -154.98 -1.17 8.53 16 14 N -0.69 -13.93 5.46 -48.86 -0.27 -14.20 16 15 C 0.17 3.06 1.69 -132.97 -0.22 2.84 16 16 C 0.36 6.31 6.57 -157.20 -1.03 5.28 16 17 N -0.51 -8.29 9.31 -10.73 -0.10 -8.39 16 18 C 0.15 1.89 11.30 -17.20 -0.19 1.70 16 19 C -0.24 -2.71 10.17 -39.32 -0.40 -3.11 16 20 C 0.15 1.96 11.31 -17.20 -0.19 1.77 16 21 N -0.50 -8.63 10.19 -10.72 -0.11 -8.74 16 22 C -0.16 -2.12 10.16 -26.72 -0.27 -2.39 16 23 C -0.14 -2.27 8.65 -26.73 -0.23 -2.50 16 24 C -0.32 -8.33 8.71 -38.43 -0.33 -8.67 16 25 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 26 H 0.12 3.40 6.26 -52.48 -0.33 3.07 16 27 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 28 H 0.40 7.43 8.95 -40.82 -0.37 7.06 16 29 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.16 1.63 8.06 -52.48 -0.42 1.20 16 32 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 1.79 7.51 -51.92 -0.39 1.40 16 35 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.10 2.54 5.94 -52.49 -0.31 2.23 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -32.12 314.47 -9.83 -41.94 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -3.90 Total: 14.56 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -5.63 Total: -7.95 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -0.01 Total: -67.25 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.12 -9.83 -41.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161317635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.559 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds