Wall clock time and date at job start Tue Mar 31 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48504 * 109.46830 * 270.00047 * 3 2 1 5 5 H 1.48498 * 109.46999 * 29.99556 * 3 2 1 6 6 H 1.48495 * 109.47150 * 150.00135 * 3 2 1 7 7 C 1.40017 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99897 * 190.03481 * 7 2 1 9 9 C 1.41548 * 120.00489 * 10.03897 * 7 2 1 10 10 C 1.41181 * 120.99285 * 28.21075 * 9 7 2 11 11 C 1.36559 * 119.14995 * 179.97438 * 10 9 7 12 12 N 1.32096 * 121.26648 * 0.02562 * 11 10 9 13 13 C 1.32533 * 122.21539 * 359.97438 * 12 11 10 14 14 N 1.39078 * 119.65493 * 179.97438 * 13 12 11 15 15 C 1.46502 * 119.99844 * 185.68930 * 14 13 12 16 16 C 1.50699 * 115.55304 * 279.38612 * 15 14 13 17 17 N 1.31788 * 119.12098 * 144.95385 * 16 15 14 18 18 C 1.32336 * 120.81518 * 179.75942 * 17 16 15 19 19 C 1.38595 * 119.10668 * 0.50727 * 18 17 16 20 20 C 1.38599 * 118.39721 * 359.75141 * 19 18 17 21 21 N 1.31794 * 119.11927 * 325.22690 * 16 15 14 22 22 C 1.53010 * 117.49473 * 133.67988 * 15 14 13 23 23 C 1.52998 * 117.49478 * 65.06063 * 15 14 13 24 24 C 1.38746 * 120.68750 * 0.02562 * 13 12 11 25 25 H 0.97004 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.42845 * 359.96329 * 10 9 7 27 27 H 1.07999 * 119.36907 * 180.02562 * 11 10 9 28 28 H 0.96998 * 120.00377 * 5.69188 * 14 13 12 29 29 H 1.08004 * 120.44624 * 180.23382 * 18 17 16 30 30 H 1.07997 * 120.80292 * 179.72268 * 19 18 17 31 31 H 1.08004 * 120.44981 * 179.97438 * 20 19 18 32 32 H 1.08999 * 117.49780 * 0.02562 * 22 15 14 33 33 H 1.08997 * 117.49220 * 145.02448 * 22 15 14 34 34 H 1.09007 * 117.49670 * 214.97249 * 23 15 14 35 35 H 1.09000 * 117.50580 * 359.97438 * 23 15 14 36 36 H 1.07999 * 120.66488 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5390 1.4402 0.7000 7 6 2.0075 -1.2126 0.0005 8 1 3.0752 -1.2197 0.1635 9 6 1.3161 -2.4292 -0.2126 10 6 0.1308 -2.4672 -0.9786 11 6 -0.5055 -3.6617 -1.1608 12 7 -0.0332 -4.7774 -0.6343 13 6 1.0743 -4.8018 0.0932 14 7 1.5234 -6.0068 0.6227 15 6 2.6741 -6.0250 1.5293 16 6 4.0257 -5.9665 0.8655 17 7 5.0037 -5.3118 1.4585 18 6 6.2051 -5.2430 0.9078 19 6 6.4236 -5.8619 -0.3128 20 6 5.3692 -6.5363 -0.9081 21 7 4.1967 -6.5668 -0.2953 22 6 2.5509 -6.8525 2.8105 23 6 2.5197 -5.3244 2.8807 24 6 1.7899 -3.6374 0.3330 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2678 -1.5631 -1.4149 27 1 -1.4122 -3.6949 -1.7465 28 1 1.0749 -6.8353 0.3917 29 1 7.0033 -4.7080 1.4009 30 1 7.3920 -5.8192 -0.7890 31 1 5.5025 -7.0300 -1.8594 32 1 1.6140 -7.3836 2.9785 33 1 3.4477 -7.3547 3.1732 34 1 3.3960 -4.8214 3.2898 35 1 1.5623 -4.8495 3.0951 36 1 2.6925 -3.6578 0.9255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161317635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:18 Heat of formation + Delta-G solvation = 96.379802 kcal Electronic energy + Delta-G solvation = -21362.551136 eV Core-core repulsion = 18232.831845 eV Total energy + Delta-G solvation = -3129.719292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.08233 -40.40375 -38.69279 -36.05037 -34.74381 -33.94934 -32.66746 -32.50442 -29.60703 -27.83678 -25.99225 -25.41914 -23.81429 -23.43163 -22.74928 -21.44312 -19.47731 -18.52197 -18.21230 -17.74998 -16.88530 -16.65421 -16.26622 -16.14559 -15.70102 -15.59390 -15.20229 -14.72683 -14.50983 -14.35706 -14.19904 -13.88913 -13.17058 -12.90286 -12.81027 -12.50075 -12.21132 -11.93632 -11.85961 -11.81777 -11.73802 -11.60456 -11.27882 -10.75279 -10.25602 -10.13566 -9.90534 -9.87029 -8.66828 -8.30672 -6.57877 -0.07231 0.21413 0.95578 1.16056 1.35706 1.49483 1.56567 2.15473 2.19383 2.53825 2.78171 2.84728 3.10212 3.34770 3.77930 3.78284 3.94826 3.97057 4.08089 4.24408 4.25093 4.35198 4.61736 4.66469 4.86373 4.90301 4.95914 5.00402 5.05124 5.16417 5.21236 5.30042 5.47651 5.60282 5.89369 6.10468 6.12399 6.34966 6.53214 6.85647 6.87721 7.01772 7.18629 7.84078 8.30645 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.005914 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.830457 B = 4733.022057 C = 5553.227153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.490 4.490 8 H 0.069 0.931 9 C 0.126 3.874 10 C -0.262 4.262 11 C 0.114 3.886 12 N -0.626 5.626 13 C 0.403 3.597 14 N -0.684 5.684 15 C 0.145 3.855 16 C 0.333 3.667 17 N -0.533 5.533 18 C 0.134 3.866 19 C -0.220 4.220 20 C 0.128 3.872 21 N -0.534 5.534 22 C -0.117 4.117 23 C -0.149 4.149 24 C -0.334 4.334 25 H 0.290 0.710 26 H 0.113 0.887 27 H 0.147 0.853 28 H 0.403 0.597 29 H 0.202 0.798 30 H 0.189 0.811 31 H 0.194 0.806 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.895 -8.691 2.592 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.087 0.913 9 C 0.118 3.882 10 C -0.286 4.286 11 C -0.036 4.036 12 N -0.350 5.350 13 C 0.171 3.829 14 N -0.318 5.318 15 C 0.053 3.947 16 C 0.065 3.935 17 N -0.248 5.248 18 C -0.031 4.031 19 C -0.241 4.241 20 C -0.037 4.037 21 N -0.248 5.248 22 C -0.155 4.155 23 C -0.188 4.188 24 C -0.361 4.361 25 H 0.101 0.899 26 H 0.131 0.869 27 H 0.164 0.836 28 H 0.239 0.761 29 H 0.218 0.782 30 H 0.206 0.794 31 H 0.210 0.790 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.453 -9.305 2.953 14.303 hybrid contribution 1.127 1.406 -0.644 1.913 sum 11.580 -7.900 2.309 14.207 Atomic orbital electron populations 1.69827 1.08913 1.30696 1.35176 1.26804 0.95671 1.04446 0.90912 0.85138 0.78932 0.75545 0.79696 1.18384 1.18695 1.18362 1.19725 0.95538 0.91400 1.45437 0.91313 1.18040 0.91141 0.92715 0.86344 1.21779 1.01447 0.98226 1.07192 1.21787 0.97986 0.87684 0.96174 1.66865 1.16165 1.31238 1.20739 1.18083 0.89143 0.85890 0.89750 1.43061 1.31659 1.05327 1.51740 1.18308 0.81360 1.11045 0.84029 1.22356 0.93992 0.88929 0.88268 1.68065 1.01908 1.17243 1.37562 1.23919 0.93614 0.92845 0.92716 1.23303 1.03260 0.99778 0.97766 1.23881 0.87208 0.93188 0.99460 1.68112 1.26105 1.20874 1.09729 1.23455 1.05300 0.93739 0.93024 1.23256 1.03761 0.95793 0.95969 1.21231 1.06303 0.93327 1.15217 0.89884 0.86864 0.83569 0.76116 0.78151 0.79355 0.78956 0.85923 0.86244 0.86811 0.89476 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.60 10.83 21.84 0.24 -43.36 16 2 C 0.04 1.94 5.30 85.29 0.45 2.39 16 3 Si 0.99 38.75 29.57 68.60 2.03 40.78 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.49 -27.68 9.12 23.52 0.21 -27.46 16 8 H 0.07 3.82 7.87 -2.91 -0.02 3.80 16 9 C 0.13 7.28 5.58 -21.12 -0.12 7.16 16 10 C -0.26 -14.62 8.71 22.60 0.20 -14.42 16 11 C 0.11 5.82 11.10 84.26 0.94 6.76 16 12 N -0.63 -32.02 10.37 -194.47 -2.02 -34.04 16 13 C 0.40 20.07 7.58 132.90 1.01 21.07 16 14 N -0.68 -27.70 5.46 -308.48 -1.68 -29.38 16 15 C 0.14 5.09 1.69 2.86 0.00 5.10 16 16 C 0.33 11.71 6.57 138.75 0.91 12.63 16 17 N -0.53 -16.99 9.31 -187.85 -1.75 -18.74 16 18 C 0.13 3.14 11.30 84.70 0.96 4.10 16 19 C -0.22 -4.32 10.17 22.44 0.23 -4.09 16 20 C 0.13 3.19 11.31 84.70 0.96 4.15 16 21 N -0.53 -18.25 10.19 -187.84 -1.91 -20.16 16 22 C -0.12 -3.03 10.16 30.60 0.31 -2.72 16 23 C -0.15 -4.90 8.65 30.59 0.26 -4.63 16 24 C -0.33 -18.04 8.71 23.01 0.20 -17.84 16 25 H 0.29 13.82 8.29 -92.70 -0.77 13.05 16 26 H 0.11 6.45 6.26 -2.91 -0.02 6.43 16 27 H 0.15 6.46 8.06 -2.91 -0.02 6.43 16 28 H 0.40 15.06 8.95 -92.71 -0.83 14.23 16 29 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.19 3.38 8.06 -2.91 -0.02 3.36 16 32 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.11 3.67 7.51 -2.38 -0.02 3.65 16 35 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.10 5.11 5.94 -2.91 -0.02 5.09 16 Total: -1.00 -72.37 314.47 1.72 -70.65 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: 0.29 Total: 42.07 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 6.52 Total: -7.82 kcal Atomic # 7 Polarization: -138.55 SS G_CDS: -7.13 Total: -145.68 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -72.37 1.72 -70.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161317635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.031 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds