Wall clock time and date at job start Tue Mar 31 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31075 * 1 3 3 Si 1.86793 * 120.00334 * 2 1 4 4 H 1.48501 * 109.47015 * 264.91159 * 3 2 1 5 5 H 1.48503 * 109.47046 * 24.90508 * 3 2 1 6 6 H 1.48491 * 109.47280 * 144.91071 * 3 2 1 7 7 C 1.39698 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00208 * 350.07039 * 7 2 1 9 9 C 1.40915 * 120.00064 * 170.08077 * 7 2 1 10 10 C 1.38950 * 126.92729 * 334.35649 * 9 7 2 11 11 N 1.35637 * 109.24683 * 179.74341 * 10 9 7 12 12 H 0.97002 * 124.69310 * 179.97438 * 11 10 9 13 13 C 1.38154 * 110.61106 * 0.02562 * 11 10 9 14 14 C 1.39166 * 132.75659 * 180.02562 * 13 11 10 15 15 C 1.37934 * 120.10765 * 179.97438 * 14 13 11 16 16 C 1.38521 * 120.69725 * 0.02562 * 15 14 13 17 17 C 1.38557 * 120.17024 * 0.02562 * 16 15 14 18 18 N 1.40022 * 120.21941 * 179.97438 * 17 16 15 19 19 C 1.35859 * 126.47789 * 123.36920 * 18 17 16 20 20 N 1.30526 * 108.56462 * 179.97438 * 19 18 17 21 21 C 1.34134 * 109.35281 * 0.02562 * 20 19 18 22 22 C 1.50699 * 125.89584 * 180.02562 * 21 20 19 23 23 N 1.46897 * 109.47090 * 275.02392 * 22 21 20 24 24 C 1.34651 * 108.20056 * 359.76986 * 21 20 19 25 25 C 1.39731 * 119.56303 * 359.95080 * 17 16 15 26 26 H 0.97001 * 119.99596 * 359.97438 * 1 2 3 27 27 H 1.07997 * 125.37798 * 359.77856 * 10 9 7 28 28 H 1.07999 * 119.95154 * 359.97243 * 14 13 11 29 29 H 1.07998 * 119.64953 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.91554 * 179.97438 * 16 15 14 31 31 H 1.07997 * 125.71949 * 359.96514 * 19 18 17 32 32 H 1.08994 * 109.47541 * 35.02901 * 22 21 20 33 33 H 1.09007 * 109.46804 * 155.02478 * 22 21 20 34 34 H 1.00897 * 110.99811 * 56.05245 * 23 22 21 35 35 H 1.00906 * 110.99712 * 180.02562 * 23 22 21 36 36 H 1.08002 * 126.58479 * 180.24856 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6176 0.0000 4 1 2.5999 1.9842 -1.3946 5 1 1.3926 2.6813 0.5896 6 1 3.4844 1.4735 0.8048 7 6 2.0092 -1.2099 -0.0005 8 1 1.4812 -2.1383 0.1603 9 6 3.4025 -1.2190 -0.2108 10 6 4.1499 -0.2680 -0.8946 11 7 5.4574 -0.6282 -0.8751 12 1 6.1755 -0.1228 -1.2873 13 6 5.6247 -1.8150 -0.1880 14 6 6.7450 -2.5861 0.1069 15 6 6.6107 -3.7540 0.8285 16 6 5.3662 -4.1748 1.2675 17 6 4.2371 -3.4232 0.9844 18 7 2.9785 -3.8479 1.4273 19 6 2.1161 -3.1435 2.2057 20 7 1.0496 -3.8689 2.4059 21 6 1.1867 -5.0445 1.7747 22 6 0.1758 -6.1619 1.7587 23 7 0.3514 -6.9983 2.9535 24 6 2.3813 -5.0514 1.1534 25 6 4.3628 -2.2383 0.2545 26 1 -0.4849 0.8401 0.0004 27 1 3.7525 0.6184 -1.3667 28 1 7.7212 -2.2697 -0.2298 29 1 7.4850 -4.3469 1.0528 30 1 5.2755 -5.0915 1.8312 31 1 2.2848 -2.1500 2.5940 32 1 -0.8300 -5.7420 1.7538 33 1 0.3201 -6.7696 0.8653 34 1 0.2863 -6.4452 3.7948 35 1 -0.3152 -7.7557 2.9658 36 1 2.7911 -5.8519 0.5553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162304198.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:49 Heat of formation + Delta-G solvation = 122.822536 kcal Electronic energy + Delta-G solvation = -21611.778973 eV Core-core repulsion = 18483.206325 eV Total energy + Delta-G solvation = -3128.572649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.55013 -40.03059 -36.43081 -34.65531 -33.60251 -32.71559 -30.53786 -28.93033 -28.59077 -28.17892 -24.86730 -24.26106 -22.62398 -21.29402 -20.71356 -19.71602 -19.23349 -17.92272 -16.53186 -16.22343 -15.71410 -15.34068 -14.74468 -14.59319 -14.40337 -13.98589 -13.68014 -13.51931 -13.29295 -13.13299 -12.89549 -12.51455 -11.93277 -11.71340 -11.58348 -11.30728 -11.15096 -10.92566 -10.58115 -10.42051 -9.76783 -9.53234 -9.26286 -9.22889 -8.50054 -8.45176 -7.70337 -7.53904 -6.95518 -6.74080 -4.23377 1.50178 2.13841 2.82043 2.99208 3.15507 3.23392 3.51430 3.63715 3.80039 3.99606 4.08006 4.34706 4.99903 5.19158 5.27568 5.34058 5.48156 5.52823 5.56906 5.73369 5.83329 5.90711 6.04586 6.14606 6.31748 6.40147 6.46766 6.62542 6.83203 6.92649 6.95643 7.15568 7.29602 7.37310 7.44417 7.54325 7.67423 7.95026 8.12382 8.31019 8.54644 8.67397 8.80795 8.90950 10.28780 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.008032 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.073170 B = 3485.039724 C = 5291.316311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.082 3.918 3 Si 0.910 3.090 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.250 1.250 7 C -0.425 4.425 8 H 0.096 0.904 9 C 0.041 3.959 10 C -0.171 4.171 11 N -0.577 5.577 12 H 0.400 0.600 13 C 0.114 3.886 14 C -0.148 4.148 15 C -0.093 4.093 16 C -0.177 4.177 17 C 0.177 3.823 18 N -0.405 5.405 19 C 0.243 3.757 20 N -0.496 5.496 21 C -0.009 4.009 22 C 0.153 3.847 23 N -0.847 5.847 24 C -0.036 4.036 25 C -0.129 4.129 26 H 0.281 0.719 27 H 0.149 0.851 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.201 0.799 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.344 0.656 35 H 0.335 0.665 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 -5.664 1.500 9.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.134 4.134 3 Si 0.739 3.261 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.174 1.174 7 C -0.457 4.457 8 H 0.114 0.886 9 C 0.035 3.965 10 C -0.293 4.293 11 N -0.178 5.178 12 H 0.235 0.765 13 C 0.001 3.999 14 C -0.170 4.170 15 C -0.113 4.113 16 C -0.199 4.199 17 C 0.086 3.914 18 N -0.083 5.083 19 C -0.039 4.039 20 N -0.214 5.214 21 C -0.137 4.137 22 C 0.021 3.979 23 N -0.377 5.377 24 C -0.169 4.169 25 C -0.137 4.137 26 H 0.091 0.909 27 H 0.166 0.834 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.217 0.783 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.344 -5.308 1.557 9.195 hybrid contribution 0.371 1.353 -0.699 1.567 sum 7.716 -3.955 0.858 8.713 Atomic orbital electron populations 1.69747 1.07484 1.29445 1.37914 1.25905 0.94760 1.00653 0.92081 0.86416 0.80198 0.80655 0.78851 1.20240 1.22220 1.17388 1.18731 0.89059 0.95603 1.42270 0.88622 1.18220 0.92599 0.90469 0.95237 1.21780 0.82597 1.07253 1.17705 1.40957 1.08279 1.19608 1.48933 0.76536 1.17958 0.94281 0.88956 0.98699 1.19937 0.95622 0.96592 1.04838 1.20349 0.96269 0.95921 0.98778 1.20544 0.91293 1.01580 1.06514 1.17048 0.82687 0.94101 0.97572 1.42861 1.13749 1.13753 1.37887 1.25005 0.85233 0.98507 0.95198 1.70129 1.22616 1.03768 1.24905 1.20243 0.95523 0.95000 1.02968 1.19798 0.94546 0.90210 0.93300 1.58763 1.58709 1.14963 1.05238 1.22270 0.96202 0.90444 1.07974 1.19158 0.94169 0.97346 1.03012 0.90860 0.83399 0.87048 0.86161 0.86432 0.78281 0.94437 0.90483 0.84375 0.85289 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.34 13.94 55.54 0.77 -21.56 16 2 C 0.08 2.14 5.51 -17.33 -0.10 2.05 16 3 Si 0.91 20.33 24.60 -169.99 -4.18 16.14 16 4 H -0.28 -5.91 6.49 56.52 0.37 -5.54 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.25 -5.61 6.75 56.52 0.38 -5.23 16 7 C -0.43 -11.31 8.24 -38.02 -0.31 -11.62 16 8 H 0.10 2.78 6.24 -52.48 -0.33 2.46 16 9 C 0.04 1.00 5.56 -104.81 -0.58 0.42 16 10 C -0.17 -3.81 9.26 -15.61 -0.14 -3.95 16 11 N -0.58 -10.86 5.99 -9.81 -0.06 -10.92 16 12 H 0.40 5.88 8.96 -40.82 -0.37 5.52 16 13 C 0.11 2.22 7.23 -83.91 -0.61 1.61 16 14 C -0.15 -2.36 10.07 -39.35 -0.40 -2.76 16 15 C -0.09 -1.41 10.01 -39.59 -0.40 -1.80 16 16 C -0.18 -3.03 9.80 -39.36 -0.39 -3.42 16 17 C 0.18 3.60 5.93 -83.44 -0.49 3.10 16 18 N -0.40 -8.37 2.58 -61.97 -0.16 -8.53 16 19 C 0.24 5.31 9.28 -89.60 -0.83 4.48 16 20 N -0.50 -10.88 11.25 -10.68 -0.12 -11.00 16 21 C -0.01 -0.18 6.59 -82.86 -0.55 -0.72 16 22 C 0.15 2.38 7.32 -4.98 -0.04 2.35 16 23 N -0.85 -11.39 9.61 -11.41 -0.11 -11.50 16 24 C -0.04 -0.70 11.29 -16.46 -0.19 -0.88 16 25 C -0.13 -2.85 6.15 -104.77 -0.64 -3.49 16 26 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 27 H 0.15 3.24 4.39 -52.49 -0.23 3.01 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.20 4.33 7.92 -52.49 -0.42 3.91 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.34 4.76 8.98 -39.29 -0.35 4.41 16 35 H 0.34 3.51 9.08 -39.29 -0.36 3.15 16 36 H 0.16 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -29.94 302.94 -8.73 -38.67 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -3.78 Total: 18.78 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -5.66 Total: -14.65 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: 0.33 Total: -63.51 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.18 Total: 16.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.94 -8.73 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162304198.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.490 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds