Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48499 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47102 * 299.99522 * 3 2 1 6 6 H 1.48495 * 109.47375 * 59.99563 * 3 2 1 7 7 C 1.39926 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00425 * 197.80411 * 7 2 1 9 9 C 1.41318 * 119.99777 * 17.80807 * 7 2 1 10 10 C 1.40825 * 120.22913 * 24.56682 * 9 7 2 11 11 C 1.37538 * 119.90790 * 180.02562 * 10 9 7 12 12 C 1.38664 * 120.38989 * 0.02562 * 11 10 9 13 13 C 1.39056 * 120.46438 * 359.97438 * 12 11 10 14 14 N 1.39882 * 119.95960 * 179.97438 * 13 12 11 15 15 C 1.46494 * 120.00122 * 359.97438 * 14 13 12 16 16 C 1.53005 * 109.47461 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.87603 * 295.70204 * 16 15 14 18 18 C 1.54313 * 109.88953 * 174.66617 * 16 15 14 19 19 C 1.55553 * 102.82928 * 218.18078 * 18 16 15 20 20 H 1.09001 * 111.04695 * 277.56329 * 19 18 16 21 21 F 1.39904 * 110.95259 * 153.77235 * 19 18 16 22 22 C 1.54904 * 101.66731 * 35.69002 * 19 18 16 23 23 N 1.47443 * 109.88340 * 56.73373 * 16 15 14 24 24 C 1.38632 * 120.07786 * 0.25791 * 13 12 11 25 25 F 1.35105 * 120.19047 * 179.72554 * 24 13 12 26 26 H 0.96994 * 120.00028 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.04619 * 359.97438 * 10 9 7 28 28 H 1.08006 * 119.80351 * 179.97438 * 11 10 9 29 29 H 1.07994 * 119.76798 * 179.97438 * 12 11 10 30 30 H 0.97003 * 120.00043 * 180.02562 * 14 13 12 31 31 H 1.08999 * 109.47203 * 59.99854 * 15 14 13 32 32 H 1.09000 * 109.47321 * 299.99959 * 15 14 13 33 33 H 1.08995 * 110.70901 * 336.53317 * 18 16 15 34 34 H 1.09009 * 110.70341 * 99.76591 * 18 16 15 35 35 H 1.09009 * 110.37171 * 204.06690 * 22 19 18 36 36 H 1.08999 * 110.47188 * 81.77400 * 22 19 18 37 37 H 1.00903 * 110.99807 * 240.84696 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8837 2.3965 1.2124 7 6 2.0081 -1.2118 0.0005 8 1 3.0493 -1.2341 0.2865 9 6 1.3523 -2.4065 -0.3732 10 6 0.2219 -2.3622 -1.2119 11 6 -0.4116 -3.5290 -1.5711 12 6 0.0557 -4.7510 -1.1118 13 6 1.1706 -4.8131 -0.2830 14 7 1.6327 -6.0516 0.1746 15 6 0.9419 -7.2821 -0.2188 16 6 1.6440 -8.4856 0.4133 17 1 2.6554 -8.5748 0.0171 18 6 0.8479 -9.7737 0.1158 19 6 0.9790 -10.5750 1.4426 20 1 1.9244 -11.1160 1.4814 21 9 -0.1019 -11.4476 1.6088 22 6 0.9444 -9.4415 2.4978 23 7 1.6913 -8.3260 1.8783 24 6 1.8211 -3.6487 0.0950 25 9 2.9011 -3.7061 0.9047 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1476 -1.4133 -1.5718 28 1 -1.2787 -3.4930 -2.2140 29 1 -0.4497 -5.6609 -1.3998 30 1 2.4101 -6.0956 0.7531 31 1 0.9614 -7.3785 -1.3044 32 1 -0.0921 -7.2438 0.1240 33 1 -0.1962 -9.5417 -0.0941 34 1 1.2964 -10.3210 -0.7134 35 1 1.4355 -9.7631 3.4164 36 1 -0.0835 -9.1424 2.7026 37 1 2.6444 -8.3015 2.2087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162477079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = -76.518358 kcal Electronic energy + Delta-G solvation = -21540.329063 eV Core-core repulsion = 17952.423159 eV Total energy + Delta-G solvation = -3587.905905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.88327 -47.00064 -38.89967 -37.37257 -34.90419 -33.12212 -30.49097 -29.73880 -29.43611 -27.19826 -25.31113 -24.49661 -21.74672 -21.11762 -20.44915 -19.94212 -17.62750 -17.37233 -16.63964 -15.96131 -15.76977 -15.21795 -15.12622 -14.94157 -14.60465 -14.13105 -13.81069 -13.69743 -13.16930 -13.00749 -12.89408 -12.72624 -12.39294 -12.10442 -11.72495 -11.59122 -11.52156 -11.13803 -11.00247 -10.96683 -10.86291 -10.68793 -10.41737 -9.79621 -9.46768 -9.28740 -8.77909 -8.71828 -7.32439 -6.77630 -6.16290 -4.34973 2.76310 3.07320 3.09873 3.16106 3.26652 3.65114 3.94888 4.00769 4.11171 4.29717 4.43780 4.59896 4.64379 4.88769 5.11011 5.24683 5.29816 5.41400 5.59613 5.63704 5.81420 5.92028 6.03143 6.13221 6.28803 6.53413 6.73162 6.95897 7.02587 7.08466 7.22528 7.36002 7.68408 7.81300 8.08233 8.17657 8.39390 8.60217 8.70299 8.84625 9.03070 10.17917 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.038050 B = 0.003416 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.704521 B = 8194.979441 C = 8575.010219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.077 3.923 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.185 4.185 11 C -0.078 4.078 12 C -0.288 4.288 13 C 0.209 3.791 14 N -0.749 5.749 15 C 0.155 3.845 16 C 0.068 3.932 17 H 0.072 0.928 18 C -0.157 4.157 19 C 0.055 3.945 20 H 0.091 0.909 21 F -0.205 7.205 22 C 0.029 3.971 23 N -0.668 5.668 24 C -0.098 4.098 25 F -0.168 7.168 26 H 0.281 0.719 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.393 0.607 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 -15.121 0.789 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.114 3.886 10 C -0.206 4.206 11 C -0.097 4.097 12 C -0.311 4.311 13 C 0.108 3.892 14 N -0.382 5.382 15 C 0.028 3.972 16 C -0.042 4.042 17 H 0.090 0.910 18 C -0.196 4.196 19 C 0.017 3.983 20 H 0.109 0.891 21 F -0.186 7.186 22 C -0.101 4.101 23 N -0.297 5.297 24 C -0.123 4.123 25 F -0.148 7.148 26 H 0.092 0.908 27 H 0.139 0.861 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.227 0.773 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.229 -14.612 0.795 14.685 hybrid contribution 1.236 -0.116 0.284 1.274 sum 2.465 -14.728 1.079 14.972 Atomic orbital electron populations 1.69864 1.07601 1.29212 1.34430 1.25909 0.94718 1.01361 0.92120 0.86231 0.81098 0.80704 0.78551 1.18307 1.19627 1.19936 1.19528 0.98357 0.90997 1.39399 0.90088 1.17405 0.91645 0.90313 0.89222 1.21009 0.99656 0.97097 1.02808 1.20466 0.97963 0.92640 0.98652 1.19714 1.02362 0.96945 1.12111 1.17420 0.93860 0.83371 0.94527 1.44065 1.34676 1.02162 1.57284 1.21065 0.95993 0.83110 0.96989 1.22371 0.99286 0.94151 0.88391 0.90988 1.23404 1.03333 0.95692 0.97180 1.23387 0.87621 0.89800 0.97452 0.89091 1.92809 1.57896 1.71426 1.96462 1.23442 1.01885 0.88386 0.96357 1.61473 1.19361 1.44081 1.04754 1.17268 0.94514 0.93283 1.07200 1.91197 1.53964 1.97134 1.72461 0.90842 0.86101 0.89075 0.88877 0.77332 0.93001 0.92837 0.88994 0.89564 0.90314 0.89112 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.45 10.96 55.55 0.61 -19.84 16 2 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 3 Si 0.91 18.94 29.60 -169.99 -5.03 13.91 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.45 -12.50 8.78 -37.78 -0.33 -12.84 16 8 H 0.08 2.22 7.74 -52.49 -0.41 1.81 16 9 C 0.12 3.26 5.58 -106.78 -0.60 2.66 16 10 C -0.19 -4.86 8.69 -38.86 -0.34 -5.20 16 11 C -0.08 -1.83 10.01 -39.68 -0.40 -2.23 16 12 C -0.29 -6.48 9.32 -39.12 -0.36 -6.85 16 13 C 0.21 4.83 6.65 -83.74 -0.56 4.27 16 14 N -0.75 -13.91 5.59 -58.61 -0.33 -14.24 16 15 C 0.15 2.25 4.50 -4.04 -0.02 2.23 16 16 C 0.07 0.72 3.48 -66.72 -0.23 0.49 16 17 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 18 C -0.16 -1.41 6.31 -24.69 -0.16 -1.57 16 19 C 0.06 0.48 4.86 -24.37 -0.12 0.36 16 20 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 21 F -0.21 -2.24 17.24 2.25 0.04 -2.20 16 22 C 0.03 0.27 7.38 -2.30 -0.02 0.26 16 23 N -0.67 -7.19 6.57 -103.81 -0.68 -7.88 16 24 C -0.10 -2.57 7.32 -38.47 -0.28 -2.85 16 25 F -0.17 -4.33 16.08 2.25 0.04 -4.29 16 26 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 27 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 28 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 29 H 0.09 1.86 6.70 -52.49 -0.35 1.51 16 30 H 0.39 7.08 7.69 -40.82 -0.31 6.76 16 31 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 32 H 0.05 0.85 7.87 -51.93 -0.41 0.44 16 33 H 0.09 0.91 7.80 -51.93 -0.40 0.50 16 34 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.34 3.13 8.91 -39.29 -0.35 2.78 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -29.54 313.25 -8.77 -38.32 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -4.64 Total: 10.87 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -3.50 Total: -19.37 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.40 Total: -41.96 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.08 Total: -6.49 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.54 -8.77 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162477079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.199 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds