Wall clock time and date at job start Tue Mar 31 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47005 * 2 1 4 4 C 1.52995 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.36907 * 120.00383 * 269.99810 * 5 4 3 7 7 H 1.08004 * 120.00064 * 141.40010 * 6 5 4 8 8 C 1.38813 * 120.00043 * 321.41187 * 6 5 4 9 9 N 1.31572 * 119.99918 * 160.19933 * 8 6 5 10 10 Si 1.86803 * 119.99947 * 340.19588 * 8 6 5 11 11 H 1.48496 * 109.46993 * 95.27204 * 10 8 6 12 12 H 1.48496 * 109.47128 * 215.27212 * 10 8 6 13 13 H 1.48504 * 109.46831 * 335.27159 * 10 8 6 14 14 C 1.38853 * 119.99910 * 89.99646 * 5 4 3 15 15 N 1.32543 * 119.70280 * 83.85846 * 14 5 4 16 16 C 1.31881 * 121.65527 * 180.02562 * 15 14 5 17 17 C 1.50706 * 119.56127 * 180.02562 * 16 15 14 18 18 C 1.38118 * 120.87901 * 359.97438 * 16 15 14 19 19 C 1.38981 * 119.31619 * 359.97438 * 18 16 15 20 20 Cl 1.73605 * 120.75620 * 179.97438 * 19 18 16 21 21 C 1.38497 * 118.48490 * 0.02562 * 19 18 16 22 22 C 1.50698 * 120.46809 * 179.97438 * 21 19 18 23 23 H 1.09003 * 109.46960 * 60.00836 * 1 2 3 24 24 H 1.09004 * 109.46984 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47237 * 300.00514 * 1 2 3 26 26 H 1.08995 * 109.47237 * 239.99486 * 2 1 3 27 27 H 1.09003 * 109.46960 * 119.99164 * 2 1 3 28 28 H 1.08995 * 109.47543 * 59.99673 * 3 2 1 29 29 H 1.09003 * 109.46579 * 299.99397 * 3 2 1 30 30 H 1.09002 * 109.47467 * 59.99273 * 4 3 2 31 31 H 1.08997 * 109.47249 * 300.00090 * 4 3 2 32 32 H 0.97006 * 119.99422 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47194 * 89.99764 * 17 16 15 34 34 H 1.08995 * 109.46945 * 209.99790 * 17 16 15 35 35 H 1.08998 * 109.46772 * 329.99913 * 17 16 15 36 36 H 1.07998 * 120.34116 * 179.97438 * 18 16 15 37 37 H 1.09000 * 109.47080 * 275.45112 * 22 21 19 38 38 H 1.09009 * 109.46858 * 35.44417 * 22 21 19 39 39 H 1.08997 * 109.47670 * 155.44407 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2871 3.4685 -1.1859 7 1 4.0380 4.5144 -1.2887 8 6 4.8389 2.7779 -2.2561 9 7 4.7073 3.2455 -3.4789 10 14 5.7684 1.1848 -1.9603 11 1 4.8515 0.0332 -2.1555 12 1 6.8984 1.0858 -2.9187 13 1 6.2943 1.1691 -0.5716 14 6 4.2892 3.4790 1.2022 15 7 5.4420 3.3069 1.8333 16 6 5.7016 3.9097 2.9771 17 6 7.0285 3.6805 3.6539 18 6 4.7741 4.7490 3.5626 19 6 3.5527 4.9580 2.9333 20 17 2.3594 6.0048 3.6363 21 6 3.3087 4.3112 1.7332 22 6 1.9993 4.5053 1.0129 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9562 -0.8901 30 1 3.9337 0.9285 -0.8890 31 1 3.9329 0.9289 0.8908 32 1 5.0933 2.7631 -4.2268 33 1 7.7467 4.4230 3.3062 34 1 6.9063 3.7708 4.7332 35 1 7.3922 2.6820 3.4117 36 1 4.9957 5.2379 4.4998 37 1 1.2563 3.8186 1.4185 38 1 1.6582 5.5316 1.1494 39 1 2.1362 4.3062 -0.0499 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:21 Heat of formation + Delta-G solvation = 35.702299 kcal Electronic energy + Delta-G solvation = -20692.638609 eV Core-core repulsion = 17661.395638 eV Total energy + Delta-G solvation = -3031.242972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98976 -36.83803 -36.38464 -34.17762 -33.17130 -31.95879 -30.74089 -29.14574 -28.24526 -25.30773 -24.03241 -23.41650 -21.41665 -20.73893 -20.49641 -17.12725 -16.59086 -16.05570 -15.47285 -14.90735 -14.67061 -14.21867 -13.99184 -13.46859 -13.15988 -12.93331 -12.85150 -12.64605 -12.30771 -12.22890 -12.07782 -11.88753 -11.85524 -11.36497 -11.29401 -11.21390 -11.08096 -10.68730 -10.54296 -10.47066 -10.23076 -9.79867 -9.57280 -9.14793 -8.92898 -8.59245 -8.09384 -7.18163 -6.12609 -3.66425 1.52957 1.55068 2.23895 3.25937 3.43589 3.57266 4.14215 4.30295 4.45918 4.89495 5.13896 5.18358 5.34522 5.36435 5.45741 5.49257 5.55865 5.74018 5.78758 5.80492 5.83580 6.04343 6.07869 6.11672 6.16956 6.20419 6.23414 6.28666 6.34785 6.42425 6.52351 6.63241 6.78167 6.83836 6.92485 7.07401 7.88801 8.25660 8.64670 8.86682 9.53428 9.87066 11.00345 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.007349 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.697712 B = 3809.142952 C = 4730.119333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.136 4.136 4 C 0.144 3.856 5 N -0.549 5.549 6 C -0.277 4.277 7 H 0.086 0.914 8 C 0.051 3.949 9 N -0.890 5.890 10 Si 0.876 3.124 11 H -0.283 1.283 12 H -0.300 1.300 13 H -0.257 1.257 14 C 0.427 3.573 15 N -0.494 5.494 16 C 0.136 3.864 17 C -0.098 4.098 18 C -0.191 4.191 19 C 0.009 3.991 20 Cl -0.072 7.072 21 C -0.134 4.134 22 C -0.107 4.107 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.267 0.733 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 -0.690 13.006 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.176 4.176 4 C 0.020 3.980 5 N -0.269 5.269 6 C -0.404 4.404 7 H 0.103 0.897 8 C -0.152 4.152 9 N -0.529 5.529 10 Si 0.705 3.295 11 H -0.211 1.211 12 H -0.227 1.227 13 H -0.181 1.181 14 C 0.199 3.801 15 N -0.208 5.208 16 C -0.004 4.004 17 C -0.156 4.156 18 C -0.212 4.212 19 C -0.026 4.026 20 Cl -0.043 7.043 21 C -0.140 4.140 22 C -0.164 4.164 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.420 -1.163 12.471 12.984 hybrid contribution -0.030 -0.143 0.444 0.467 sum -3.451 -1.306 12.915 13.431 Atomic orbital electron populations 1.21741 0.96293 1.00757 1.01689 1.21512 0.95465 0.98004 1.01389 1.22185 0.97593 0.95273 1.02518 1.21255 0.92536 0.84488 0.99740 1.41512 1.73500 1.12279 0.99579 1.18599 1.39008 0.97380 0.85443 0.89680 1.25414 0.96305 0.98343 0.95150 1.69791 1.44450 1.40511 0.98144 0.86939 0.79978 0.83492 0.79070 1.21114 1.22740 1.18077 1.18411 0.85542 0.88900 0.87232 1.67874 1.21852 1.23506 1.07533 1.21051 0.95730 0.92424 0.91168 1.20664 0.92640 1.03391 0.98896 1.21636 0.93499 1.03419 1.02604 1.21092 0.91081 0.95645 0.94763 1.98334 1.57082 1.65435 1.83478 1.21196 0.99712 0.99091 0.94047 1.20791 0.91919 1.00890 1.02771 0.92670 0.93466 0.93095 0.92269 0.92772 0.92460 0.90802 0.92269 0.94028 0.92305 0.90625 0.91185 0.90624 0.84882 0.91687 0.92269 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.13 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.14 -2.45 4.94 -26.73 -0.13 -2.59 16 4 C 0.14 3.08 4.46 -4.05 -0.02 3.06 16 5 N -0.55 -12.91 1.39 -115.06 -0.16 -13.07 16 6 C -0.28 -7.49 8.92 -15.07 -0.13 -7.62 16 7 H 0.09 2.49 7.88 -52.48 -0.41 2.07 16 8 C 0.05 1.42 5.34 -17.45 -0.09 1.33 16 9 N -0.89 -26.18 13.97 55.49 0.77 -25.41 16 10 Si 0.88 22.03 24.91 -169.99 -4.23 17.80 16 11 H -0.28 -6.81 6.70 56.52 0.38 -6.43 16 12 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 13 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.43 9.34 6.01 -155.05 -0.93 8.41 16 15 N -0.49 -10.61 10.31 -8.67 -0.09 -10.70 16 16 C 0.14 2.34 6.78 -82.61 -0.56 1.78 16 17 C -0.10 -1.28 10.17 36.01 0.37 -0.91 16 18 C -0.19 -2.97 9.56 -39.35 -0.38 -3.35 16 19 C 0.01 0.15 6.36 -39.21 -0.25 -0.10 16 20 Cl -0.07 -1.02 27.61 -51.86 -1.43 -2.45 16 21 C -0.13 -2.55 5.92 -104.20 -0.62 -3.17 16 22 C -0.11 -1.86 8.20 36.00 0.30 -1.57 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.98 6.15 -51.93 -0.32 0.66 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.06 1.37 3.20 -51.93 -0.17 1.21 16 31 H 0.04 0.85 8.05 -51.93 -0.42 0.44 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.06 1.03 6.95 -51.93 -0.36 0.67 16 38 H 0.06 0.94 7.25 -51.92 -0.38 0.57 16 39 H 0.10 1.96 6.21 -51.93 -0.32 1.64 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -29.45 326.85 -8.21 -37.67 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.76 Total: -0.43 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.24 Total: -8.33 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.53 Total: -49.18 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.23 Total: 17.80 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.43 Total: -2.45 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.45 -8.21 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.370 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds