Wall clock time and date at job start Tue Mar 31 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47005 * 2 1 4 4 C 1.52995 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.36907 * 120.00383 * 269.99810 * 5 4 3 7 7 H 1.08004 * 120.00064 * 141.40010 * 6 5 4 8 8 C 1.38813 * 120.00043 * 321.41187 * 6 5 4 9 9 N 1.31572 * 119.99918 * 160.19933 * 8 6 5 10 10 Si 1.86803 * 119.99947 * 340.19588 * 8 6 5 11 11 H 1.48496 * 109.46993 * 95.27204 * 10 8 6 12 12 H 1.48496 * 109.47128 * 215.27212 * 10 8 6 13 13 H 1.48504 * 109.46831 * 335.27159 * 10 8 6 14 14 C 1.38853 * 119.99910 * 89.99646 * 5 4 3 15 15 N 1.32543 * 119.70280 * 83.85846 * 14 5 4 16 16 C 1.31881 * 121.65527 * 180.02562 * 15 14 5 17 17 C 1.50706 * 119.56127 * 180.02562 * 16 15 14 18 18 C 1.38118 * 120.87901 * 359.97438 * 16 15 14 19 19 C 1.38981 * 119.31619 * 359.97438 * 18 16 15 20 20 Cl 1.73605 * 120.75620 * 179.97438 * 19 18 16 21 21 C 1.38497 * 118.48490 * 0.02562 * 19 18 16 22 22 C 1.50698 * 120.46809 * 179.97438 * 21 19 18 23 23 H 1.09003 * 109.46960 * 60.00836 * 1 2 3 24 24 H 1.09004 * 109.46984 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47237 * 300.00514 * 1 2 3 26 26 H 1.08995 * 109.47237 * 239.99486 * 2 1 3 27 27 H 1.09003 * 109.46960 * 119.99164 * 2 1 3 28 28 H 1.08995 * 109.47543 * 59.99673 * 3 2 1 29 29 H 1.09003 * 109.46579 * 299.99397 * 3 2 1 30 30 H 1.09002 * 109.47467 * 59.99273 * 4 3 2 31 31 H 1.08997 * 109.47249 * 300.00090 * 4 3 2 32 32 H 0.97006 * 119.99422 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47194 * 89.99764 * 17 16 15 34 34 H 1.08995 * 109.46945 * 209.99790 * 17 16 15 35 35 H 1.08998 * 109.46772 * 329.99913 * 17 16 15 36 36 H 1.07998 * 120.34116 * 179.97438 * 18 16 15 37 37 H 1.09000 * 109.47080 * 275.45112 * 22 21 19 38 38 H 1.09009 * 109.46858 * 35.44417 * 22 21 19 39 39 H 1.08997 * 109.47670 * 155.44407 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2871 3.4685 -1.1859 7 1 4.0380 4.5144 -1.2887 8 6 4.8389 2.7779 -2.2561 9 7 4.7073 3.2455 -3.4789 10 14 5.7684 1.1848 -1.9603 11 1 4.8515 0.0332 -2.1555 12 1 6.8984 1.0858 -2.9187 13 1 6.2943 1.1691 -0.5716 14 6 4.2892 3.4790 1.2022 15 7 5.4420 3.3069 1.8333 16 6 5.7016 3.9097 2.9771 17 6 7.0285 3.6805 3.6539 18 6 4.7741 4.7490 3.5626 19 6 3.5527 4.9580 2.9333 20 17 2.3594 6.0048 3.6363 21 6 3.3087 4.3112 1.7332 22 6 1.9993 4.5053 1.0129 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9562 -0.8901 30 1 3.9337 0.9285 -0.8890 31 1 3.9329 0.9289 0.8908 32 1 5.0933 2.7631 -4.2268 33 1 7.7467 4.4230 3.3062 34 1 6.9063 3.7708 4.7332 35 1 7.3922 2.6820 3.4117 36 1 4.9957 5.2379 4.4998 37 1 1.2563 3.8186 1.4185 38 1 1.6582 5.5316 1.1494 39 1 2.1362 4.3062 -0.0499 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:21 Heat of formation + Delta-G solvation = 20.316991 kcal Electronic energy + Delta-G solvation = -20693.305766 eV Core-core repulsion = 17661.395638 eV Total energy + Delta-G solvation = -3031.910129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44075 -38.42575 -37.66880 -35.55393 -34.68581 -33.81285 -32.24308 -30.39352 -29.73743 -26.99355 -25.56444 -24.84510 -22.88585 -22.14780 -21.98211 -19.05372 -18.13561 -17.65659 -17.13093 -16.36318 -16.10676 -15.64557 -15.38195 -14.90563 -14.67856 -14.53002 -14.27737 -14.16264 -13.75174 -13.54703 -13.43052 -13.17518 -13.07483 -12.96669 -12.83948 -12.63716 -12.55047 -12.14731 -11.95143 -11.89585 -11.77957 -11.63082 -11.30487 -10.84184 -10.41780 -10.28035 -9.52529 -9.03035 -8.28687 -5.78209 0.13368 0.16114 0.95018 1.23202 1.36652 1.52567 2.34313 2.71178 2.76835 3.02193 3.64374 3.87937 3.99039 4.02755 4.16383 4.20144 4.34502 4.40077 4.46502 4.51402 4.60806 4.75157 4.77655 4.82210 4.86287 4.97469 4.98643 5.02898 5.07540 5.13424 5.22552 5.33993 5.40555 5.43339 5.51553 5.63352 5.83602 6.12983 6.86178 7.22055 7.50551 7.89480 8.88703 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.007349 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.697712 B = 3809.142952 C = 4730.119333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C -0.123 4.123 4 C 0.140 3.860 5 N -0.557 5.557 6 C -0.256 4.256 7 H 0.050 0.950 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.935 3.065 11 H -0.267 1.267 12 H -0.306 1.306 13 H -0.266 1.266 14 C 0.391 3.609 15 N -0.533 5.533 16 C 0.126 3.874 17 C -0.095 4.095 18 C -0.173 4.173 19 C 0.007 3.993 20 Cl -0.043 7.043 21 C -0.147 4.147 22 C -0.096 4.096 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.267 0.733 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.174 0.826 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 -0.949 16.277 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.163 4.163 4 C 0.017 3.983 5 N -0.277 5.277 6 C -0.385 4.385 7 H 0.067 0.933 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.763 3.237 11 H -0.194 1.194 12 H -0.234 1.234 13 H -0.190 1.190 14 C 0.164 3.836 15 N -0.247 5.247 16 C -0.013 4.013 17 C -0.152 4.152 18 C -0.193 4.193 19 C -0.028 4.028 20 Cl -0.014 7.014 21 C -0.153 4.153 22 C -0.153 4.153 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.192 0.808 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.862 -1.435 15.772 16.302 hybrid contribution 0.068 0.087 -0.368 0.384 sum -3.795 -1.348 15.405 15.922 Atomic orbital electron populations 1.21701 0.94219 1.02178 1.01922 1.21507 0.97276 0.95716 1.01661 1.22028 0.95162 0.97302 1.01778 1.21320 0.94630 0.83450 0.98911 1.41395 1.74194 1.12697 0.99418 1.18359 1.37060 0.95958 0.87110 0.93275 1.25918 0.97550 1.01327 0.94939 1.69893 1.46515 1.42377 0.98884 0.85997 0.78685 0.81129 0.77844 1.19406 1.23406 1.19005 1.18445 0.86918 0.90700 0.87501 1.67712 1.21988 1.25364 1.09613 1.21761 0.97676 0.91869 0.89999 1.20787 0.90450 1.03177 1.00816 1.22061 0.92142 1.01779 1.03319 1.21197 0.92191 0.95351 0.94046 1.98346 1.56047 1.64288 1.82746 1.21193 0.99581 0.99313 0.95262 1.20670 0.92029 1.02036 1.00604 0.93210 0.91457 0.92132 0.93101 0.91410 0.91522 0.93104 0.94275 0.93341 0.92379 0.89631 0.87353 0.91469 0.80816 0.90075 0.90964 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.12 -3.61 5.93 30.60 0.18 -3.43 16 3 C -0.12 -4.45 4.94 30.59 0.15 -4.30 16 4 C 0.14 6.08 4.46 86.38 0.39 6.46 16 5 N -0.56 -26.91 1.39 -517.95 -0.72 -27.62 16 6 C -0.26 -14.51 8.92 84.04 0.75 -13.76 16 7 H 0.05 3.08 7.88 -2.91 -0.02 3.06 16 8 C 0.00 0.08 5.34 84.87 0.45 0.53 16 9 N -0.93 -57.42 13.97 21.65 0.30 -57.12 16 10 Si 0.93 47.26 24.91 68.60 1.71 48.97 16 11 H -0.27 -12.63 6.70 99.48 0.67 -11.96 16 12 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 13 H -0.27 -13.64 7.11 99.48 0.71 -12.94 16 14 C 0.39 17.23 6.01 133.07 0.80 18.02 16 15 N -0.53 -22.66 10.31 -181.35 -1.87 -24.53 16 16 C 0.13 4.07 6.78 42.52 0.29 4.36 16 17 C -0.10 -2.17 10.17 71.24 0.72 -1.44 16 18 C -0.17 -4.78 9.56 22.42 0.21 -4.57 16 19 C 0.01 0.22 6.36 22.51 0.14 0.36 16 20 Cl -0.04 -1.09 27.61 -2.72 -0.08 -1.16 16 21 C -0.15 -5.52 5.92 -19.59 -0.12 -5.64 16 22 C -0.10 -3.35 8.20 71.24 0.58 -2.76 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 2.25 6.15 -2.39 -0.01 2.23 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.04 1.84 3.20 -2.39 -0.01 1.83 16 31 H 0.05 1.99 8.05 -2.39 -0.02 1.98 16 32 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 1.63 8.08 -2.39 -0.02 1.61 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.08 2.48 6.95 -2.39 -0.02 2.47 16 38 H 0.07 2.25 7.25 -2.38 -0.02 2.23 16 39 H 0.06 2.70 6.21 -2.39 -0.01 2.69 16 Total: -1.00 -66.87 326.85 5.62 -61.25 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.00 Total: 9.06 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 5.27 Total: -8.85 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -2.28 Total: -109.27 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.71 Total: 48.97 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -66.87 5.62 -61.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.568 kcal (2) G-P(sol) polarization free energy of solvation -66.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds