Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86804 * 119.99797 * 2 1 4 4 H 1.48500 * 109.47188 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46820 * 120.00394 * 3 2 1 6 6 H 1.48493 * 109.47629 * 240.00632 * 3 2 1 7 7 C 1.39920 * 120.00615 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00871 * 162.26038 * 7 2 1 9 9 C 1.41415 * 119.99491 * 342.25595 * 7 2 1 10 10 C 1.40746 * 120.19536 * 155.63604 * 9 7 2 11 11 C 1.37878 * 119.87277 * 179.97438 * 10 9 7 12 12 F 1.35099 * 119.86653 * 180.02562 * 11 10 9 13 13 C 1.38744 * 120.26913 * 0.02562 * 11 10 9 14 14 C 1.39248 * 120.40167 * 0.02562 * 13 11 10 15 15 N 1.39684 * 119.93560 * 180.02562 * 14 13 11 16 16 C 1.46496 * 120.00087 * 359.97438 * 15 14 13 17 17 H 1.08998 * 109.50330 * 325.00156 * 16 15 14 18 18 C 1.53034 * 109.50352 * 85.08572 * 16 15 14 19 19 N 1.46851 * 109.52562 * 179.07999 * 18 16 15 20 20 C 1.46847 * 111.22743 * 298.31446 * 19 18 16 21 21 C 1.53034 * 109.52482 * 61.72149 * 20 19 18 22 22 C 1.53120 * 109.50140 * 204.92273 * 16 15 14 23 23 H 1.09001 * 109.52397 * 62.44247 * 22 16 15 24 24 F 1.39901 * 109.52564 * 302.31158 * 22 16 15 25 25 C 1.38329 * 120.12071 * 359.69766 * 14 13 11 26 26 H 0.97000 * 119.99927 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.06297 * 359.96174 * 10 9 7 28 28 H 1.08003 * 119.79855 * 179.97438 * 13 11 10 29 29 H 0.97006 * 119.99708 * 180.02562 * 15 14 13 30 30 H 1.09006 * 109.46198 * 299.13473 * 18 16 15 31 31 H 1.08991 * 109.46815 * 59.09865 * 18 16 15 32 32 H 1.00902 * 110.96386 * 62.40686 * 19 18 16 33 33 H 1.08997 * 109.46473 * 301.70478 * 20 19 18 34 34 H 1.09003 * 109.45161 * 181.73116 * 20 19 18 35 35 H 1.08997 * 109.50492 * 180.87453 * 21 20 19 36 36 H 1.09006 * 109.50251 * 60.76487 * 21 20 19 37 37 H 1.08002 * 120.13548 * 180.28041 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 1.2773 2.7465 0.0006 5 1 3.0961 1.6964 1.2125 6 1 3.0959 1.6967 -1.2125 7 6 2.0081 -1.2117 -0.0005 8 1 3.0495 -1.2338 -0.2855 9 6 1.3515 -2.4074 0.3722 10 6 1.8272 -3.6494 -0.0883 11 6 1.1822 -4.8111 0.2796 12 9 1.6393 -6.0032 -0.1621 13 6 0.0657 -4.7609 1.1017 14 6 -0.4153 -3.5382 1.5629 15 7 -1.5399 -3.4990 2.3905 16 6 -2.2124 -4.7433 2.7720 17 1 -2.1676 -5.4500 1.9433 18 6 -1.5176 -5.3454 3.9953 19 7 -2.2048 -6.5812 4.3914 20 6 -3.5987 -6.3164 4.7703 21 6 -4.3551 -5.7438 3.5696 22 6 -3.6756 -4.4493 3.1145 23 1 -4.1849 -4.0599 2.2330 24 9 -3.7339 -3.5038 4.1440 25 6 0.2225 -2.3630 1.2086 26 1 -0.4850 0.8401 0.0004 27 1 2.6958 -3.6923 -0.7289 28 1 -0.4339 -5.6755 1.3849 29 1 -1.8760 -2.6477 2.7121 30 1 -0.4794 -5.5692 3.7498 31 1 -1.5500 -4.6325 4.8191 32 1 -2.1545 -7.2731 3.6587 33 1 -3.6221 -5.5986 5.5902 34 1 -4.0714 -7.2459 5.0877 35 1 -5.3855 -5.5329 3.8555 36 1 -4.3440 -6.4669 2.7539 37 1 -0.1477 -1.4149 1.5699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168233602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = -82.262808 kcal Electronic energy + Delta-G solvation = -22204.259590 eV Core-core repulsion = 18616.104588 eV Total energy + Delta-G solvation = -3588.155003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.73714 -47.72501 -38.78739 -37.36948 -34.77375 -33.20846 -31.31818 -30.02478 -29.30661 -26.84576 -25.49695 -23.76211 -22.77895 -21.35674 -20.44677 -20.03284 -17.66105 -16.94991 -16.28158 -16.16466 -15.44375 -15.24890 -15.04170 -14.64490 -14.58756 -14.37985 -14.23589 -14.05158 -13.73943 -13.01899 -12.99886 -12.76496 -12.11721 -11.98881 -11.92104 -11.55449 -11.41296 -11.16997 -11.08964 -10.95099 -10.66371 -10.57103 -10.42822 -10.10610 -9.71636 -9.47676 -8.97587 -8.36681 -7.41067 -6.88755 -6.37863 -4.50199 2.71342 2.92289 3.03455 3.06095 3.18817 3.82599 3.87898 4.25220 4.40989 4.50437 4.54328 4.66109 4.79541 4.98451 5.20993 5.37042 5.44666 5.56407 5.58504 5.69482 5.71430 5.84883 5.95281 6.22474 6.34895 6.59400 6.71122 6.88804 6.96193 7.13215 7.22580 7.27887 7.47749 7.65599 7.88871 7.99158 8.27009 8.48588 8.63635 8.82118 8.88575 10.09615 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018871 B = 0.005024 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.416950 B = 5572.118658 C = 6739.659320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.159 3.841 10 C -0.288 4.288 11 C 0.143 3.857 12 F -0.168 7.168 13 C -0.336 4.336 14 C 0.240 3.760 15 N -0.747 5.747 16 C 0.104 3.896 17 H 0.088 0.912 18 C 0.041 3.959 19 N -0.682 5.682 20 C 0.055 3.945 21 C -0.182 4.182 22 C 0.084 3.916 23 H 0.087 0.913 24 F -0.208 7.208 25 C -0.238 4.238 26 H 0.282 0.718 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.397 0.603 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.340 0.660 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 -6.430 6.044 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.155 3.845 10 C -0.310 4.310 11 C 0.124 3.876 12 F -0.147 7.147 13 C -0.359 4.359 14 C 0.141 3.859 15 N -0.380 5.380 16 C -0.005 4.005 17 H 0.106 0.894 18 C -0.090 4.090 19 N -0.310 5.310 20 C -0.075 4.075 21 C -0.222 4.222 22 C 0.047 3.953 23 H 0.105 0.895 24 F -0.189 7.189 25 C -0.262 4.262 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.231 0.769 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.135 -6.462 6.705 12.365 hybrid contribution -0.264 1.122 -0.963 1.503 sum -8.399 -5.339 5.742 11.490 Atomic orbital electron populations 1.69840 1.07632 1.29405 1.34018 1.25923 0.94732 1.01386 0.92013 0.86346 0.80179 0.79999 0.80123 1.20311 1.18686 1.18900 1.19553 0.98206 0.90992 1.39784 0.90120 1.17055 0.89700 0.91105 0.86643 1.20846 1.06593 0.91672 1.11859 1.17215 0.94568 0.79349 0.96473 1.91327 1.88871 1.46079 1.88453 1.19672 1.04699 0.95951 1.15604 1.17251 0.85978 0.93467 0.89202 1.44264 1.31546 1.06010 1.56172 1.21985 0.90451 0.89805 0.98304 0.89411 1.22611 0.98979 0.90989 0.96448 1.60663 1.14213 1.11022 1.45104 1.22041 0.87872 1.01072 0.96540 1.22884 1.01191 0.97018 1.01098 1.21909 0.97313 0.87604 0.88447 0.89535 1.92794 1.97483 1.66859 1.61752 1.20761 1.02664 0.95311 1.07485 0.90755 0.88037 0.88431 0.76874 0.89340 0.90373 0.84204 0.90329 0.90272 0.90056 0.89971 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.56 10.96 55.55 0.61 -18.95 16 2 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 3 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 4 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.81 9.05 -37.74 -0.34 -12.16 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.16 4.16 5.57 -106.86 -0.60 3.56 16 10 C -0.29 -7.23 9.76 -38.77 -0.38 -7.61 16 11 C 0.14 3.40 7.28 -39.53 -0.29 3.11 16 12 F -0.17 -3.78 17.26 2.25 0.04 -3.74 16 13 C -0.34 -7.42 8.84 -39.02 -0.35 -7.77 16 14 C 0.24 5.31 6.63 -83.87 -0.56 4.76 16 15 N -0.75 -13.51 5.23 -52.15 -0.27 -13.78 16 16 C 0.10 1.51 2.10 -67.85 -0.14 1.37 16 17 H 0.09 1.31 6.47 -51.93 -0.34 0.97 16 18 C 0.04 0.57 5.96 -3.83 -0.02 0.55 16 19 N -0.68 -7.94 6.87 -113.82 -0.78 -8.72 16 20 C 0.05 0.54 6.44 -3.84 -0.02 0.52 16 21 C -0.18 -1.72 5.86 -26.65 -0.16 -1.88 16 22 C 0.08 1.04 3.74 -26.61 -0.10 0.95 16 23 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 24 F -0.21 -2.97 15.79 2.25 0.04 -2.93 16 25 C -0.24 -5.94 8.53 -38.67 -0.33 -6.27 16 26 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 27 H 0.10 2.44 8.06 -52.48 -0.42 2.02 16 28 H 0.10 1.94 6.07 -52.48 -0.32 1.62 16 29 H 0.40 7.13 8.24 -40.82 -0.34 6.79 16 30 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 31 H 0.08 1.19 7.88 -51.93 -0.41 0.78 16 32 H 0.34 3.54 8.86 -39.29 -0.35 3.19 16 33 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 LS Contribution 308.01 15.07 4.64 4.64 Total: -1.00 -26.72 308.01 -8.67 -35.39 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -4.54 Total: 14.03 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -3.37 Total: -19.05 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: -0.45 Total: -41.45 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.07 Total: -6.67 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.72 -8.67 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168233602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.874 kcal (2) G-P(sol) polarization free energy of solvation -26.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds