Wall clock time and date at job start Tue Mar 31 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40469 * 119.72915 * 80.55366 * 3 2 1 5 5 C 1.36073 * 120.75823 * 179.97438 * 4 3 2 6 6 C 1.40042 * 119.87308 * 0.02562 * 5 4 3 7 7 C 1.41654 * 120.01997 * 0.02562 * 6 5 4 8 8 C 1.38679 * 119.72489 * 260.27822 * 3 2 1 9 9 N 1.34179 * 118.72670 * 180.02562 * 7 6 5 10 10 C 1.31169 * 120.48834 * 359.97438 * 9 7 6 11 11 N 1.32346 * 122.94750 * 359.97438 * 10 9 7 12 12 C 1.32598 * 121.51133 * 0.04041 * 11 10 9 13 13 N 1.37851 * 120.89111 * 179.97438 * 12 11 10 14 14 C 1.46497 * 120.00016 * 359.96040 * 13 12 11 15 15 C 1.52996 * 109.47246 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47224 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46918 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00527 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99828 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99917 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99975 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46802 * 90.00137 * 21 19 17 23 23 H 1.48504 * 109.46895 * 209.99664 * 21 19 17 24 24 H 1.48499 * 109.47175 * 330.00111 * 21 19 17 25 25 H 1.08000 * 119.62588 * 0.02562 * 4 3 2 26 26 H 1.07999 * 120.06675 * 180.02562 * 5 4 3 27 27 H 1.07997 * 120.31971 * 0.02562 * 8 3 2 28 28 H 1.07993 * 118.52463 * 179.97438 * 10 9 7 29 29 H 0.96997 * 119.99862 * 179.97438 * 13 12 11 30 30 H 1.09001 * 109.47287 * 299.99480 * 14 13 12 31 31 H 1.09000 * 109.47141 * 59.99881 * 14 13 12 32 32 H 1.09003 * 109.47739 * 299.99965 * 15 14 13 33 33 H 1.09005 * 109.47082 * 60.00002 * 15 14 13 34 34 H 1.09001 * 109.47406 * 300.00143 * 16 15 14 35 35 H 1.09000 * 109.47045 * 60.00557 * 16 15 14 36 36 H 0.97000 * 119.99780 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2646 -0.1992 -1.2033 5 6 4.6252 -0.2021 -1.2275 6 6 5.3443 -0.0046 -0.0421 7 6 4.6558 0.1972 1.1793 8 6 3.2555 0.2043 1.1870 9 7 5.3706 0.3844 2.2992 10 6 6.6817 0.3796 2.2605 11 7 7.3682 0.1942 1.1443 12 6 6.7612 0.0003 -0.0185 13 7 7.4889 -0.1910 -1.1735 14 6 8.9531 -0.1808 -1.1269 15 6 9.5098 -0.4148 -2.5327 16 6 11.0390 -0.4036 -2.4841 17 6 11.5873 -0.6334 -3.8689 18 1 10.9126 -0.7731 -4.7006 19 6 12.9503 -0.6654 -4.0741 20 7 13.7720 -0.4958 -3.0613 21 14 13.6300 -0.9510 -5.7905 22 1 13.8077 0.3542 -6.4760 23 1 14.9407 -1.6425 -5.6951 24 1 12.6818 -1.7917 -6.5648 25 1 2.7142 -0.3516 -2.1199 26 1 5.1494 -0.3565 -2.1590 27 1 2.7162 0.3617 2.1093 28 1 7.2254 0.5338 3.1808 29 1 7.0315 -0.3321 -2.0172 30 1 9.2981 0.7840 -0.7551 31 1 9.3010 -0.9718 -0.4625 32 1 9.1649 -1.3798 -2.9042 33 1 9.1619 0.3759 -3.1975 34 1 11.3837 0.5616 -2.1128 35 1 11.3872 -1.1941 -1.8192 36 1 14.7309 -0.5179 -3.2057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:46 Heat of formation + Delta-G solvation = 83.709916 kcal Electronic energy + Delta-G solvation = -19756.415907 eV Core-core repulsion = 16626.147208 eV Total energy + Delta-G solvation = -3130.268699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51300 -38.52177 -37.13227 -36.51388 -34.31494 -32.82837 -32.06207 -31.15983 -30.06953 -26.96117 -25.23987 -24.76477 -23.13945 -21.94590 -20.76013 -20.34726 -18.30369 -17.73061 -17.01985 -16.36029 -15.83500 -15.59491 -14.92512 -14.71253 -14.57116 -14.37638 -14.22722 -14.12763 -13.88702 -13.28721 -12.84145 -12.64963 -12.38883 -12.27353 -12.15388 -11.90411 -11.36873 -10.93723 -10.92383 -10.75477 -10.64969 -9.99420 -9.65214 -9.62616 -9.34038 -9.26059 -9.19379 -8.44742 -7.96716 -6.09424 -4.12911 -0.11257 0.35739 1.67972 2.18144 2.23803 2.87419 3.13079 3.25711 3.31921 3.32704 3.34910 3.93030 4.00921 4.14651 4.24150 4.37083 4.41093 4.61624 4.78477 5.01028 5.26683 5.34027 5.42334 5.51228 5.60797 5.63643 5.77227 5.96244 5.98685 6.19055 6.43386 6.48795 6.64711 6.85424 6.97499 7.03899 7.40580 7.53653 7.64876 7.88369 8.22044 8.28810 8.93458 9.51864 11.01710 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.002767 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.728923 B =10117.404061 C =11043.382479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.255 3.745 3 C 0.017 3.983 4 C -0.109 4.109 5 C -0.056 4.056 6 C -0.186 4.186 7 C 0.190 3.810 8 C -0.056 4.056 9 N -0.565 5.565 10 C 0.361 3.639 11 N -0.592 5.592 12 C 0.476 3.524 13 N -0.682 5.682 14 C 0.120 3.880 15 C -0.124 4.124 16 C 0.026 3.974 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.148 0.852 28 H 0.196 0.804 29 H 0.411 0.589 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.164 1.074 6.565 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.061 4.061 3 C 0.010 3.990 4 C -0.130 4.130 5 C -0.076 4.076 6 C -0.195 4.195 7 C 0.064 3.936 8 C -0.079 4.079 9 N -0.285 5.285 10 C 0.070 3.930 11 N -0.320 5.320 12 C 0.219 3.781 13 N -0.310 5.310 14 C -0.002 4.002 15 C -0.162 4.162 16 C -0.012 4.012 17 C -0.563 4.563 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.531 5.531 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.156 0.844 26 H 0.154 0.846 27 H 0.166 0.834 28 H 0.212 0.788 29 H 0.249 0.751 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.090 1.222 7.486 20.541 hybrid contribution 0.437 -0.326 -2.006 2.079 sum -18.652 0.896 5.480 19.461 Atomic orbital electron populations 1.81272 1.11942 1.08025 1.07133 1.25614 0.92530 0.94038 0.93907 1.15925 0.84366 1.03812 0.94847 1.20656 0.93997 1.01536 0.96778 1.20645 0.93815 0.96330 0.96855 1.19168 0.93634 1.10222 0.96502 1.18445 0.93528 0.93666 0.88004 1.20956 0.91612 0.97828 0.97459 1.68826 1.08625 1.22857 1.28215 1.24655 0.86868 0.86344 0.95096 1.68057 1.40805 1.25131 0.98001 1.18792 0.86549 0.84797 0.87961 1.45061 1.08316 1.71363 1.06261 1.21852 0.75449 1.02726 1.00219 1.21943 1.00911 1.00775 0.92578 1.19013 0.86929 0.97754 0.97506 1.21176 0.91570 1.49646 0.93884 0.92660 1.25026 0.97230 0.95231 0.96925 1.69958 1.03017 1.49812 1.30358 0.86581 0.78458 0.78332 0.84548 1.20626 1.21162 1.19894 0.84401 0.84553 0.83392 0.78762 0.75141 0.90970 0.90972 0.92611 0.92620 0.96181 0.96166 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.64 18.54 41.83 0.78 -3.87 16 2 C 0.25 2.33 15.29 -22.47 -0.34 1.99 16 3 C 0.02 0.13 5.73 -106.97 -0.61 -0.48 16 4 C -0.11 -0.75 9.65 -39.52 -0.38 -1.13 16 5 C -0.06 -0.43 9.51 -39.68 -0.38 -0.81 16 6 C -0.19 -1.95 5.76 -106.59 -0.61 -2.57 16 7 C 0.19 2.07 6.61 -84.87 -0.56 1.51 16 8 C -0.06 -0.49 9.74 -38.75 -0.38 -0.87 16 9 N -0.56 -6.67 10.44 -12.67 -0.13 -6.81 16 10 C 0.36 4.13 12.22 -92.21 -1.13 3.00 16 11 N -0.59 -7.85 9.67 -13.53 -0.13 -7.98 16 12 C 0.48 5.82 7.55 -154.97 -1.17 4.65 16 13 N -0.68 -7.98 5.62 -59.96 -0.34 -8.31 16 14 C 0.12 1.76 5.73 -4.05 -0.02 1.74 16 15 C -0.12 -2.15 5.27 -26.73 -0.14 -2.29 16 16 C 0.03 0.60 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -13.94 9.11 -34.44 -0.31 -14.26 16 18 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 21 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 26 H 0.14 0.74 6.55 -52.49 -0.34 0.39 16 27 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.20 1.60 8.06 -52.49 -0.42 1.17 16 29 H 0.41 3.75 6.70 -40.82 -0.27 3.48 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -31.20 323.32 -9.48 -40.67 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -3.96 Total: -1.70 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -6.28 Total: -7.55 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.91 Total: -52.05 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.20 -9.48 -40.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.385 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds