Wall clock time and date at job start Tue Mar 31 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40469 * 119.72915 * 80.55366 * 3 2 1 5 5 C 1.36073 * 120.75823 * 179.97438 * 4 3 2 6 6 C 1.40042 * 119.87308 * 0.02562 * 5 4 3 7 7 C 1.41654 * 120.01997 * 0.02562 * 6 5 4 8 8 C 1.38679 * 119.72489 * 260.27822 * 3 2 1 9 9 N 1.34179 * 118.72670 * 180.02562 * 7 6 5 10 10 C 1.31169 * 120.48834 * 359.97438 * 9 7 6 11 11 N 1.32346 * 122.94750 * 359.97438 * 10 9 7 12 12 C 1.32598 * 121.51133 * 0.04041 * 11 10 9 13 13 N 1.37851 * 120.89111 * 179.97438 * 12 11 10 14 14 C 1.46497 * 120.00016 * 359.96040 * 13 12 11 15 15 C 1.52996 * 109.47246 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.47224 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46918 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00527 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99828 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99917 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99975 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46802 * 90.00137 * 21 19 17 23 23 H 1.48504 * 109.46895 * 209.99664 * 21 19 17 24 24 H 1.48499 * 109.47175 * 330.00111 * 21 19 17 25 25 H 1.08000 * 119.62588 * 0.02562 * 4 3 2 26 26 H 1.07999 * 120.06675 * 180.02562 * 5 4 3 27 27 H 1.07997 * 120.31971 * 0.02562 * 8 3 2 28 28 H 1.07993 * 118.52463 * 179.97438 * 10 9 7 29 29 H 0.96997 * 119.99862 * 179.97438 * 13 12 11 30 30 H 1.09001 * 109.47287 * 299.99480 * 14 13 12 31 31 H 1.09000 * 109.47141 * 59.99881 * 14 13 12 32 32 H 1.09003 * 109.47739 * 299.99965 * 15 14 13 33 33 H 1.09005 * 109.47082 * 60.00002 * 15 14 13 34 34 H 1.09001 * 109.47406 * 300.00143 * 16 15 14 35 35 H 1.09000 * 109.47045 * 60.00557 * 16 15 14 36 36 H 0.97000 * 119.99780 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2646 -0.1992 -1.2033 5 6 4.6252 -0.2021 -1.2275 6 6 5.3443 -0.0046 -0.0421 7 6 4.6558 0.1972 1.1793 8 6 3.2555 0.2043 1.1870 9 7 5.3706 0.3844 2.2992 10 6 6.6817 0.3796 2.2605 11 7 7.3682 0.1942 1.1443 12 6 6.7612 0.0003 -0.0185 13 7 7.4889 -0.1910 -1.1735 14 6 8.9531 -0.1808 -1.1269 15 6 9.5098 -0.4148 -2.5327 16 6 11.0390 -0.4036 -2.4841 17 6 11.5873 -0.6334 -3.8689 18 1 10.9126 -0.7731 -4.7006 19 6 12.9503 -0.6654 -4.0741 20 7 13.7720 -0.4958 -3.0613 21 14 13.6300 -0.9510 -5.7905 22 1 13.8077 0.3542 -6.4760 23 1 14.9407 -1.6425 -5.6951 24 1 12.6818 -1.7917 -6.5648 25 1 2.7142 -0.3516 -2.1199 26 1 5.1494 -0.3565 -2.1590 27 1 2.7162 0.3617 2.1093 28 1 7.2254 0.5338 3.1808 29 1 7.0315 -0.3321 -2.0172 30 1 9.2981 0.7840 -0.7551 31 1 9.3010 -0.9718 -0.4625 32 1 9.1649 -1.3798 -2.9042 33 1 9.1619 0.3759 -3.1975 34 1 11.3837 0.5616 -2.1128 35 1 11.3872 -1.1941 -1.8192 36 1 14.7309 -0.5179 -3.2057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:46 Heat of formation + Delta-G solvation = 66.774717 kcal Electronic energy + Delta-G solvation = -19757.150273 eV Core-core repulsion = 16626.147208 eV Total energy + Delta-G solvation = -3131.003064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31463 -39.29264 -38.15838 -37.30054 -35.86202 -34.25025 -33.01889 -32.28507 -31.00479 -28.48813 -26.28394 -25.55455 -24.63316 -22.78877 -22.16870 -21.25172 -19.15211 -18.67248 -18.34498 -17.72954 -16.65582 -16.62415 -16.47906 -15.82584 -15.80607 -15.19239 -14.98975 -14.98746 -14.70959 -14.26645 -14.00883 -13.95741 -13.72188 -13.54102 -13.00069 -12.94291 -12.82414 -12.52430 -12.41289 -12.34068 -11.60099 -11.56215 -11.45966 -11.17077 -10.52555 -10.47383 -10.13715 -10.11775 -8.81784 -8.17387 -6.27948 -0.85357 -0.38547 0.86650 1.43858 1.44251 1.47438 1.50023 1.54985 1.93676 2.39604 2.43867 2.58483 3.12287 3.16927 3.23140 3.38814 3.52673 3.67265 3.97013 4.08606 4.19283 4.28321 4.34676 4.60849 4.66897 4.77458 5.00483 5.00798 5.06279 5.13587 5.20883 5.31452 5.48314 5.55047 5.75627 5.76011 5.88107 6.02232 6.26002 6.31328 6.57957 6.90066 7.36896 7.41627 8.94357 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.002767 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.728923 B =10117.404061 C =11043.382479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.279 3.721 3 C 0.024 3.976 4 C -0.092 4.092 5 C -0.055 4.055 6 C -0.188 4.188 7 C 0.166 3.834 8 C -0.056 4.056 9 N -0.574 5.574 10 C 0.349 3.651 11 N -0.620 5.620 12 C 0.466 3.534 13 N -0.676 5.676 14 C 0.140 3.860 15 C -0.106 4.106 16 C 0.025 3.975 17 C -0.539 4.539 18 H 0.065 0.935 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.963 3.037 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.261 1.261 25 H 0.168 0.832 26 H 0.164 0.836 27 H 0.157 0.843 28 H 0.217 0.783 29 H 0.424 0.576 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.067 0.933 34 H -0.006 1.006 35 H -0.006 1.006 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.873 0.774 4.776 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.036 4.036 3 C 0.018 3.982 4 C -0.113 4.113 5 C -0.075 4.075 6 C -0.198 4.198 7 C 0.041 3.959 8 C -0.079 4.079 9 N -0.294 5.294 10 C 0.059 3.941 11 N -0.349 5.349 12 C 0.209 3.791 13 N -0.307 5.307 14 C 0.016 3.984 15 C -0.144 4.144 16 C -0.013 4.013 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.788 3.212 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.185 1.185 25 H 0.186 0.814 26 H 0.181 0.819 27 H 0.174 0.826 28 H 0.233 0.767 29 H 0.265 0.735 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.857 0.923 5.698 21.641 hybrid contribution 0.885 -0.223 -1.395 1.667 sum -19.972 0.700 4.303 20.442 Atomic orbital electron populations 1.81310 1.13072 1.09365 1.08386 1.25611 0.92399 0.92864 0.92724 1.15941 0.83630 1.03504 0.95144 1.20981 0.93769 0.99209 0.97292 1.20921 0.94103 0.95704 0.96806 1.19265 0.92786 1.10215 0.97485 1.18721 0.94315 0.94724 0.88141 1.21014 0.90855 0.97680 0.98305 1.68828 1.08797 1.22816 1.28972 1.25070 0.87044 0.86494 0.95483 1.68042 1.41925 1.26002 0.98916 1.18952 0.87419 0.85030 0.87686 1.44680 1.06763 1.72244 1.06991 1.21326 0.77448 1.01511 0.98092 1.21630 0.96395 1.01910 0.94439 1.18920 0.91412 0.95255 0.95703 1.21692 0.92049 1.48689 0.95299 0.91631 1.25975 0.97877 0.95137 1.01040 1.70100 1.03268 1.51277 1.32744 0.85481 0.77683 0.78478 0.79607 1.19959 1.21235 1.18490 0.81410 0.81871 0.82565 0.76664 0.73507 0.92305 0.92310 0.91406 0.91397 0.98773 0.98758 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.42 18.54 19.00 0.35 -9.07 16 2 C 0.28 4.48 15.29 88.33 1.35 5.83 16 3 C 0.02 0.32 5.73 -21.38 -0.12 0.19 16 4 C -0.09 -0.91 9.65 22.31 0.22 -0.70 16 5 C -0.06 -0.66 9.51 22.20 0.21 -0.45 16 6 C -0.19 -3.62 5.76 -21.14 -0.12 -3.74 16 7 C 0.17 3.43 6.61 40.06 0.26 3.70 16 8 C -0.06 -0.89 9.74 22.81 0.22 -0.67 16 9 N -0.57 -13.29 10.44 -193.99 -2.03 -15.31 16 10 C 0.35 7.97 12.22 180.90 2.21 10.18 16 11 N -0.62 -16.42 9.67 -196.73 -1.90 -18.32 16 12 C 0.47 10.93 7.55 134.03 1.01 11.94 16 13 N -0.68 -14.81 5.62 -343.62 -1.93 -16.74 16 14 C 0.14 4.09 5.73 86.38 0.49 4.58 16 15 C -0.11 -3.58 5.27 30.59 0.16 -3.42 16 16 C 0.02 1.20 4.97 29.85 0.15 1.35 16 17 C -0.54 -28.62 9.11 25.60 0.23 -28.38 16 18 H 0.07 3.26 7.74 -2.91 -0.02 3.24 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 20 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 21 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 26 H 0.16 1.06 6.55 -2.91 -0.02 1.04 16 27 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.22 3.55 8.06 -2.91 -0.02 3.52 16 29 H 0.42 6.61 6.70 -92.71 -0.62 5.99 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 34 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -68.40 323.32 4.05 -64.35 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 0.50 Total: 4.84 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 6.74 Total: 0.74 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -5.22 Total: -114.30 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -68.40 4.05 -64.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.129 kcal (2) G-P(sol) polarization free energy of solvation -68.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds