Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34750 * 116.99619 * 2 1 4 4 O 1.21496 * 120.00002 * 359.97438 * 3 2 1 5 5 C 1.47462 * 119.99846 * 179.97438 * 3 2 1 6 6 C 1.40267 * 120.99872 * 90.02208 * 5 3 2 7 7 F 1.35104 * 120.50067 * 359.95451 * 6 5 3 8 8 C 1.38285 * 119.01155 * 179.97438 * 6 5 3 9 9 N 1.31863 * 121.08774 * 0.02562 * 8 6 5 10 10 C 1.31592 * 122.24294 * 359.72395 * 9 8 6 11 11 C 1.39128 * 120.84403 * 0.53977 * 10 9 8 12 12 N 1.38862 * 120.59332 * 179.74779 * 11 10 9 13 13 C 1.46499 * 119.99931 * 359.72950 * 12 11 10 14 14 C 1.53000 * 109.46840 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00162 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99868 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47023 * 90.00014 * 20 18 16 22 22 H 1.48496 * 109.47251 * 210.00457 * 20 18 16 23 23 H 1.48498 * 109.47139 * 330.00202 * 20 18 16 24 24 H 1.09000 * 109.47080 * 60.00391 * 1 2 3 25 25 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47913 * 300.00157 * 1 2 3 27 27 H 1.07998 * 119.45651 * 179.97438 * 8 6 5 28 28 H 1.08000 * 119.57628 * 180.29672 * 10 9 8 29 29 H 0.97000 * 119.99649 * 179.71992 * 12 11 10 30 30 H 1.09002 * 109.47391 * 59.99484 * 13 12 11 31 31 H 1.09001 * 109.46813 * 299.99541 * 13 12 11 32 32 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 33 33 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 34 34 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 35 35 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 36 36 H 0.96996 * 119.99309 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5363 1.2779 0.0006 6 6 4.2581 1.3160 -1.2015 7 9 3.6148 1.2815 -2.3890 8 6 5.6382 1.3889 -1.1530 9 7 6.2782 1.4223 -0.0006 10 6 5.6473 1.3939 1.1539 11 6 4.2593 1.3152 1.2065 12 7 3.5992 1.2803 2.4277 13 6 4.3652 1.3204 3.6758 14 6 3.4045 1.2703 4.8656 15 6 4.2045 1.3128 6.1691 16 6 3.2583 1.2641 7.3410 17 1 2.1929 1.2089 7.1729 18 6 3.7527 1.2901 8.6278 19 7 2.9269 1.2482 9.6506 20 14 5.5955 1.3850 8.9186 21 1 6.0119 2.8084 8.9950 22 1 5.9312 0.7018 10.1936 23 1 6.3083 0.7202 7.7983 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8899 27 1 6.2012 1.4181 -2.0742 28 1 6.2146 1.4281 2.0723 29 1 2.6309 1.2295 2.4543 30 1 4.9457 2.2420 3.7165 31 1 5.0390 0.4645 3.7162 32 1 2.7310 2.1264 4.8250 33 1 2.8237 0.3489 4.8251 34 1 4.8783 0.4569 6.2100 35 1 4.7850 2.2345 6.2093 36 1 3.2748 1.2661 10.5558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -100.004201 kcal Electronic energy + Delta-G solvation = -21389.170783 eV Core-core repulsion = 17787.873666 eV Total energy + Delta-G solvation = -3601.297117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.37083 -41.08577 -39.91533 -36.99351 -36.72104 -34.11465 -32.66202 -31.68523 -29.76440 -28.21563 -27.02528 -25.28360 -23.71395 -22.22671 -21.65164 -20.48992 -18.64003 -18.26797 -17.70331 -17.42268 -16.79613 -16.30063 -16.10886 -15.84012 -15.77137 -15.26532 -14.82672 -14.16839 -14.04864 -13.83872 -13.69063 -13.49828 -12.80026 -12.59613 -12.47876 -12.40459 -12.09448 -11.29276 -11.22922 -11.14821 -11.12108 -10.78524 -10.20059 -10.03872 -9.98108 -9.81468 -9.62115 -9.33961 -8.64011 -7.94526 -6.14055 -4.13917 0.48846 0.89240 1.64190 2.32794 2.92279 3.24127 3.32377 3.33494 3.34866 3.70674 4.26904 4.30111 4.36024 4.44007 4.65320 4.81711 4.88228 4.91600 5.17796 5.18995 5.21813 5.33915 5.34435 5.55511 5.70253 5.92097 6.09891 6.21794 6.26852 6.59257 6.78923 7.07429 7.17133 7.21291 7.28860 7.62060 7.65986 8.41214 8.89293 9.47137 10.99177 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021442 B = 0.003708 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.554638 B = 7550.406421 C = 8660.339150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.347 6.347 3 C 0.522 3.478 4 O -0.483 6.483 5 C -0.203 4.203 6 C 0.140 3.860 7 F -0.123 7.123 8 C 0.000 4.000 9 N -0.399 5.399 10 C 0.027 3.973 11 C 0.245 3.755 12 N -0.713 5.713 13 C 0.107 3.893 14 C -0.115 4.115 15 C -0.009 4.009 16 C -0.526 4.526 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.171 0.829 28 H 0.173 0.827 29 H 0.403 0.597 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.016 0.984 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -2.335 -21.795 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.263 6.263 3 C 0.363 3.637 4 O -0.369 6.369 5 C -0.218 4.218 6 C 0.118 3.882 7 F -0.101 7.101 8 C -0.158 4.158 9 N -0.106 5.106 10 C -0.140 4.140 11 C 0.131 3.869 12 N -0.336 5.336 13 C -0.015 4.015 14 C -0.153 4.153 15 C -0.047 4.047 16 C -0.564 4.564 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 H 0.084 0.916 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.188 0.812 28 H 0.190 0.810 29 H 0.238 0.762 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.455 -1.992 -21.433 21.665 hybrid contribution -0.869 0.043 0.114 0.878 sum 1.585 -1.949 -21.319 21.467 Atomic orbital electron populations 1.23406 0.75498 1.04289 1.02974 1.86693 1.23941 1.32137 1.83572 1.20694 0.88189 0.82025 0.72758 1.90905 1.66325 1.36032 1.43603 1.18774 0.90390 1.19609 0.93033 1.18472 0.91372 0.98999 0.79363 1.91541 1.81961 1.93154 1.43444 1.22429 0.88562 1.07163 0.97676 1.67351 1.39465 1.06274 0.97510 1.22530 0.88741 1.05564 0.97155 1.18684 0.92866 0.90433 0.84922 1.45068 1.09468 1.76169 1.02878 1.21982 0.95664 1.01915 0.81944 1.21713 0.97980 1.02148 0.93437 1.19495 0.96224 0.96700 0.92276 1.21061 0.94636 1.51377 0.89299 0.91047 1.25036 0.97936 0.94376 0.96081 1.69911 1.34761 1.50569 0.98707 0.86762 0.85960 0.78607 0.77856 1.20194 1.21301 1.18920 0.91589 0.87530 0.91315 0.81195 0.81000 0.76159 0.91113 0.91043 0.91887 0.91849 0.96172 0.96619 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.57 101.05 1.07 1.34 16 2 O -0.35 -4.19 10.58 -40.63 -0.43 -4.62 16 3 C 0.52 7.13 6.02 34.49 0.21 7.34 16 4 O -0.48 -7.61 16.90 -19.26 -0.33 -7.94 16 5 C -0.20 -2.64 5.81 -104.47 -0.61 -3.25 16 6 C 0.14 1.67 7.34 -38.80 -0.28 1.38 16 7 F -0.12 -1.45 16.92 2.25 0.04 -1.41 16 8 C 0.00 0.00 11.15 -17.52 -0.20 -0.20 16 9 N -0.40 -4.71 10.31 -13.06 -0.13 -4.85 16 10 C 0.03 0.31 10.48 -17.32 -0.18 0.13 16 11 C 0.25 3.06 6.69 -83.43 -0.56 2.51 16 12 N -0.71 -9.02 5.65 -58.31 -0.33 -9.35 16 13 C 0.11 1.42 4.92 -4.04 -0.02 1.40 16 14 C -0.11 -1.96 5.27 -26.73 -0.14 -2.10 16 15 C -0.01 -0.19 4.04 -27.88 -0.11 -0.31 16 16 C -0.53 -14.27 9.66 -34.44 -0.33 -14.60 16 17 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 18 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 20 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.17 1.71 6.75 -52.49 -0.35 1.36 16 29 H 0.40 5.13 7.43 -40.82 -0.30 4.83 16 30 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 31 H 0.07 0.88 7.97 -51.93 -0.41 0.46 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 35 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -31.52 319.86 -5.88 -37.40 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.37 Total: 0.70 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.25 Total: -4.56 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.31 Total: -40.49 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.76 Total: -12.55 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.52 -5.88 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.600 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds