Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34750 * 116.99619 * 2 1 4 4 O 1.21496 * 120.00002 * 359.97438 * 3 2 1 5 5 C 1.47462 * 119.99846 * 179.97438 * 3 2 1 6 6 C 1.40267 * 120.99872 * 90.02208 * 5 3 2 7 7 F 1.35104 * 120.50067 * 359.95451 * 6 5 3 8 8 C 1.38285 * 119.01155 * 179.97438 * 6 5 3 9 9 N 1.31863 * 121.08774 * 0.02562 * 8 6 5 10 10 C 1.31592 * 122.24294 * 359.72395 * 9 8 6 11 11 C 1.39128 * 120.84403 * 0.53977 * 10 9 8 12 12 N 1.38862 * 120.59332 * 179.74779 * 11 10 9 13 13 C 1.46499 * 119.99931 * 359.72950 * 12 11 10 14 14 C 1.53000 * 109.46840 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00162 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99868 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47023 * 90.00014 * 20 18 16 22 22 H 1.48496 * 109.47251 * 210.00457 * 20 18 16 23 23 H 1.48498 * 109.47139 * 330.00202 * 20 18 16 24 24 H 1.09000 * 109.47080 * 60.00391 * 1 2 3 25 25 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47913 * 300.00157 * 1 2 3 27 27 H 1.07998 * 119.45651 * 179.97438 * 8 6 5 28 28 H 1.08000 * 119.57628 * 180.29672 * 10 9 8 29 29 H 0.97000 * 119.99649 * 179.71992 * 12 11 10 30 30 H 1.09002 * 109.47391 * 59.99484 * 13 12 11 31 31 H 1.09001 * 109.46813 * 299.99541 * 13 12 11 32 32 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 33 33 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 34 34 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 35 35 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 36 36 H 0.96996 * 119.99309 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5363 1.2779 0.0006 6 6 4.2581 1.3160 -1.2015 7 9 3.6148 1.2815 -2.3890 8 6 5.6382 1.3889 -1.1530 9 7 6.2782 1.4223 -0.0006 10 6 5.6473 1.3939 1.1539 11 6 4.2593 1.3152 1.2065 12 7 3.5992 1.2803 2.4277 13 6 4.3652 1.3204 3.6758 14 6 3.4045 1.2703 4.8656 15 6 4.2045 1.3128 6.1691 16 6 3.2583 1.2641 7.3410 17 1 2.1929 1.2089 7.1729 18 6 3.7527 1.2901 8.6278 19 7 2.9269 1.2482 9.6506 20 14 5.5955 1.3850 8.9186 21 1 6.0119 2.8084 8.9950 22 1 5.9312 0.7018 10.1936 23 1 6.3083 0.7202 7.7983 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8899 27 1 6.2012 1.4181 -2.0742 28 1 6.2146 1.4281 2.0723 29 1 2.6309 1.2295 2.4543 30 1 4.9457 2.2420 3.7165 31 1 5.0390 0.4645 3.7162 32 1 2.7310 2.1264 4.8250 33 1 2.8237 0.3489 4.8251 34 1 4.8783 0.4569 6.2100 35 1 4.7850 2.2345 6.2093 36 1 3.2748 1.2661 10.5558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -120.643194 kcal Electronic energy + Delta-G solvation = -21390.065757 eV Core-core repulsion = 17787.873666 eV Total energy + Delta-G solvation = -3602.192091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.27184 -42.04991 -40.85118 -38.04546 -37.73558 -35.69649 -34.09025 -33.06302 -30.88093 -29.07850 -28.43062 -26.18980 -25.10311 -23.26541 -22.74318 -21.96655 -19.59576 -19.29199 -18.92574 -18.56296 -18.32495 -17.22965 -17.01986 -16.79799 -16.69757 -16.43653 -16.29937 -15.59303 -14.93988 -14.89459 -14.74560 -14.59311 -14.42674 -13.88750 -13.76248 -13.33316 -13.24034 -12.83346 -12.68538 -12.21954 -12.06067 -12.00796 -11.79155 -11.72758 -11.46459 -11.33442 -10.90445 -10.74977 -10.54585 -8.86478 -8.28067 -6.33392 -0.42986 0.00916 0.61288 1.40938 1.42631 1.43681 1.54057 1.94381 2.38844 2.47103 2.80633 3.08340 3.38795 3.46725 3.54855 3.77271 3.92255 4.03626 4.15617 4.17998 4.22031 4.44767 4.49732 4.61573 4.74752 4.82495 4.87941 4.98762 5.01068 5.33181 5.45078 5.56267 5.65155 5.82537 6.16721 6.28123 6.29753 6.74508 6.75801 7.31756 8.88855 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021442 B = 0.003708 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.554638 B = 7550.406421 C = 8660.339150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.352 6.352 3 C 0.523 3.477 4 O -0.513 6.513 5 C -0.217 4.217 6 C 0.131 3.869 7 F -0.125 7.125 8 C 0.012 3.988 9 N -0.409 5.409 10 C 0.031 3.969 11 C 0.238 3.762 12 N -0.717 5.717 13 C 0.120 3.880 14 C -0.107 4.107 15 C -0.008 4.008 16 C -0.536 4.536 17 H 0.027 0.973 18 C 0.000 4.000 19 N -0.955 5.955 20 Si 0.954 3.046 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.235 1.235 24 H 0.069 0.931 25 H 0.137 0.863 26 H 0.066 0.934 27 H 0.201 0.799 28 H 0.192 0.808 29 H 0.400 0.600 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -2.659 -23.350 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.268 6.268 3 C 0.366 3.634 4 O -0.401 6.401 5 C -0.232 4.232 6 C 0.109 3.891 7 F -0.103 7.103 8 C -0.145 4.145 9 N -0.116 5.116 10 C -0.135 4.135 11 C 0.125 3.875 12 N -0.340 5.340 13 C -0.003 4.003 14 C -0.145 4.145 15 C -0.046 4.046 16 C -0.574 4.574 17 H 0.046 0.954 18 C -0.196 4.196 19 N -0.596 5.596 20 Si 0.777 3.223 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.157 1.157 24 H 0.088 0.912 25 H 0.155 0.845 26 H 0.085 0.915 27 H 0.218 0.782 28 H 0.208 0.792 29 H 0.235 0.765 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.047 -2.333 -23.030 23.692 hybrid contribution -1.820 0.113 0.542 1.902 sum 3.227 -2.220 -22.488 22.827 Atomic orbital electron populations 1.23724 0.73776 1.06375 1.03081 1.86686 1.25716 1.31362 1.83017 1.20899 0.88599 0.82005 0.71864 1.90883 1.67037 1.36956 1.45248 1.18964 0.90180 1.20189 0.93914 1.18604 0.91873 0.99650 0.78978 1.91534 1.82112 1.93239 1.43445 1.22902 0.88113 1.05034 0.98497 1.67449 1.39537 1.06759 0.97838 1.22846 0.88332 1.04434 0.97920 1.18722 0.93228 0.91129 0.84428 1.44916 1.09281 1.76937 1.02853 1.21777 0.94536 1.03508 0.80447 1.21488 0.98127 1.01407 0.93449 1.19446 0.95662 0.97569 0.91958 1.21511 0.93857 1.50382 0.91677 0.95447 1.26103 1.03771 0.94057 0.95716 1.70088 1.37511 1.52670 0.99347 0.85606 0.79111 0.79198 0.78422 1.19253 1.21577 1.15744 0.91227 0.84484 0.91536 0.78233 0.79159 0.76513 0.89665 0.89259 0.93017 0.92542 0.94951 0.95347 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.57 113.37 1.20 1.58 16 2 O -0.35 -8.27 10.58 -56.60 -0.60 -8.87 16 3 C 0.52 14.14 6.02 70.25 0.42 14.56 16 4 O -0.51 -16.29 16.90 19.85 0.34 -15.95 16 5 C -0.22 -5.41 5.81 -19.76 -0.11 -5.53 16 6 C 0.13 2.90 7.34 22.77 0.17 3.07 16 7 F -0.12 -2.80 16.92 44.97 0.76 -2.04 16 8 C 0.01 0.23 11.15 84.70 0.94 1.17 16 9 N -0.41 -8.45 10.31 -195.24 -2.01 -10.46 16 10 C 0.03 0.63 10.48 84.94 0.89 1.52 16 11 C 0.24 5.51 6.69 38.83 0.26 5.77 16 12 N -0.72 -16.98 5.65 -338.41 -1.91 -18.89 16 13 C 0.12 2.85 4.92 86.38 0.42 3.27 16 14 C -0.11 -3.53 5.27 30.59 0.16 -3.37 16 15 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 16 C -0.54 -29.55 9.66 25.60 0.25 -29.31 16 17 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 18 C 0.00 0.00 5.47 84.65 0.46 0.46 16 19 N -0.96 -59.07 13.96 21.45 0.30 -58.77 16 20 Si 0.95 41.90 27.47 68.60 1.88 43.78 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.23 -9.10 6.54 99.48 0.65 -8.45 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.20 2.37 8.06 -2.91 -0.02 2.34 16 28 H 0.19 3.06 6.75 -2.91 -0.02 3.04 16 29 H 0.40 9.96 7.43 -92.71 -0.69 9.27 16 30 H 0.09 1.82 7.95 -2.39 -0.02 1.80 16 31 H 0.09 1.84 7.97 -2.39 -0.02 1.83 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.03 1.27 7.20 -2.39 -0.02 1.26 16 35 H 0.03 1.11 7.57 -2.39 -0.02 1.10 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.59 319.86 4.31 -65.29 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.37 Total: 12.96 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 5.18 Total: -7.04 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -3.63 Total: -88.12 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.26 Total: -24.83 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.76 Total: -2.04 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.78 kcal Total: -69.59 4.31 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.358 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds