Wall clock time and date at job start Tue Mar 31 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35779 * 116.99945 * 2 1 4 4 C 1.38671 * 119.57988 * 180.02562 * 3 2 1 5 5 C 1.39101 * 119.09200 * 179.68405 * 4 3 2 6 6 S 1.76198 * 120.85883 * 180.29784 * 5 4 3 7 7 C 1.81402 * 103.00075 * 0.26642 * 6 5 4 8 8 C 1.40171 * 118.28765 * 0.55235 * 5 4 3 9 9 N 1.40299 * 120.46522 * 179.73559 * 8 5 4 10 10 C 1.46500 * 120.00371 * 179.72761 * 9 8 5 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46957 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00340 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00296 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46692 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47025 * 119.99570 * 17 15 13 20 20 H 1.48492 * 109.46854 * 239.99727 * 17 15 13 21 21 C 1.38221 * 119.07764 * 359.47096 * 8 5 4 22 22 N 1.32214 * 120.81694 * 0.24986 * 21 8 5 23 23 H 1.09000 * 109.47324 * 300.00190 * 1 2 3 24 24 H 1.08999 * 109.46930 * 59.99519 * 1 2 3 25 25 H 1.08997 * 109.47577 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.45191 * 359.97438 * 4 3 2 27 27 H 1.08994 * 109.47444 * 180.02562 * 7 6 5 28 28 H 1.09007 * 109.46649 * 299.99848 * 7 6 5 29 29 H 1.08997 * 109.47016 * 59.99705 * 7 6 5 30 30 H 0.97010 * 119.99719 * 359.73349 * 9 8 5 31 31 H 1.09000 * 109.47175 * 60.00337 * 10 9 8 32 32 H 1.09001 * 109.47297 * 299.99844 * 10 9 8 33 33 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 34 34 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 35 35 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 36 36 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 37 37 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 38 38 H 1.08004 * 119.59335 * 180.27330 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.4307 1.2722 -0.0005 5 6 4.0516 2.5170 -0.0072 6 16 5.8085 2.6505 -0.0161 7 6 6.3494 0.9190 -0.0217 8 6 3.2437 3.6624 -0.0013 9 7 3.8218 4.9407 -0.0021 10 6 2.9678 6.1310 -0.0019 11 6 3.8425 7.3863 -0.0035 12 6 2.9505 8.6294 -0.0039 13 6 3.8120 9.8659 -0.0061 14 1 4.8881 9.7742 -0.0075 15 6 3.2265 11.1141 -0.0063 16 7 1.9161 11.2257 -0.0051 17 14 4.2944 12.6468 -0.0098 18 1 5.7260 12.2525 -0.0114 19 1 4.0008 13.4518 -1.2226 20 1 4.0051 13.4543 1.2023 21 6 1.8694 3.5150 -0.0002 22 7 1.3170 2.3138 0.0002 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 4.0194 0.3668 -0.0005 27 1 7.4386 0.8785 -0.0269 28 1 5.9718 0.4175 0.8695 29 1 5.9626 0.4204 -0.9105 30 1 4.7872 5.0364 -0.0028 31 1 2.3391 6.1269 0.8886 32 1 2.3379 6.1264 -0.8914 33 1 4.4727 7.3911 0.8858 34 1 4.4709 7.3902 -0.8941 35 1 2.3206 8.6244 -0.8933 36 1 2.3218 8.6257 0.8866 37 1 1.5040 12.1039 -0.0056 38 1 1.2389 4.3919 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:01 Heat of formation + Delta-G solvation = -12.867972 kcal Electronic energy + Delta-G solvation = -18990.154036 eV Core-core repulsion = 15958.848606 eV Total energy + Delta-G solvation = -3031.305430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54482 -38.22466 -36.06622 -33.67617 -32.63178 -31.56148 -29.22210 -29.08547 -27.14681 -26.21451 -24.14429 -22.98845 -21.92242 -20.43708 -18.81190 -17.52082 -16.71758 -16.22991 -16.13787 -16.00090 -15.00838 -14.90634 -14.52488 -14.40847 -14.26611 -14.09405 -13.77401 -13.49081 -13.01657 -12.53145 -12.25830 -12.22226 -11.93473 -11.79702 -11.36534 -10.93558 -10.76352 -10.68318 -10.64862 -10.56165 -9.97701 -9.65494 -9.52389 -9.50250 -9.14071 -8.39667 -8.05634 -7.04263 -6.04407 -4.07053 0.96549 1.24157 1.41655 2.09577 3.18360 3.28991 3.36667 3.40417 3.57257 3.75259 4.41067 4.43570 4.75711 4.77550 4.77662 4.96789 5.17571 5.25542 5.31879 5.33078 5.41813 5.50749 5.53293 5.60148 5.67515 5.73376 6.04864 6.16109 6.54707 6.58695 6.94621 7.16932 7.34852 7.60147 7.72180 7.72201 7.94298 7.96417 8.36115 8.99637 9.57490 11.06942 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.003200 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.403847 B = 8747.293436 C = 9979.336120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.316 6.316 3 C 0.268 3.732 4 C -0.155 4.155 5 C -0.100 4.100 6 S -0.094 6.094 7 C -0.145 4.145 8 C 0.167 3.833 9 N -0.730 5.730 10 C 0.118 3.882 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.076 3.924 22 N -0.500 5.500 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.138 0.862 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.401 0.599 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -23.087 -0.009 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.224 6.224 3 C 0.086 3.914 4 C -0.182 4.182 5 C -0.225 4.225 6 S 0.145 5.855 7 C -0.314 4.314 8 C 0.055 3.945 9 N -0.360 5.360 10 C -0.005 4.005 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.087 4.087 22 N -0.223 5.223 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.155 0.845 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.237 0.763 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.010 -22.191 -0.012 22.395 hybrid contribution 0.638 0.010 0.002 0.638 sum 3.648 -22.182 -0.010 22.480 Atomic orbital electron populations 1.22760 0.77724 1.02360 1.02359 1.86174 1.22419 1.24530 1.89264 1.19244 0.88604 0.84642 0.98869 1.20625 0.92615 0.96694 1.08296 1.21375 0.97437 0.94218 1.09478 1.85386 0.96692 1.10922 1.92452 1.23698 1.05676 0.96123 1.05889 1.18315 0.92822 0.85330 0.98068 1.45068 1.08881 1.01590 1.80430 1.21717 0.93983 0.83876 1.00916 1.21851 0.98938 0.93901 1.01107 1.19032 0.94617 0.90094 0.97564 1.21244 0.93098 0.90901 1.50740 0.92587 1.25021 0.94954 0.99222 0.95247 1.69965 1.08913 1.23737 1.50732 0.86529 0.80702 0.83136 0.77609 1.19732 1.20984 1.20990 1.21912 0.90373 0.94113 1.02304 1.67217 1.40256 0.98267 1.16564 0.92530 0.92538 0.89118 0.84475 0.87249 0.89584 0.89578 0.76290 0.92170 0.92176 0.92643 0.92644 0.96282 0.96281 0.92982 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.32 -3.97 10.48 -19.05 -0.20 -4.17 16 3 C 0.27 3.71 7.48 -17.21 -0.13 3.58 16 4 C -0.15 -1.94 9.36 -39.10 -0.37 -2.30 16 5 C -0.10 -1.31 6.17 -38.54 -0.24 -1.55 16 6 S -0.09 -1.03 21.25 -107.50 -2.28 -3.31 16 7 C -0.15 -1.03 9.19 101.05 0.93 -0.10 16 8 C 0.17 2.40 6.69 -83.26 -0.56 1.85 16 9 N -0.73 -10.69 5.71 -58.30 -0.33 -11.02 16 10 C 0.12 1.90 4.93 -4.04 -0.02 1.88 16 11 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.08 1.09 10.48 -17.39 -0.18 0.91 16 22 N -0.50 -7.31 9.20 -13.27 -0.12 -7.43 16 23 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 24 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.14 1.39 6.06 -52.49 -0.32 1.07 16 27 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.56 7.78 -51.92 -0.40 0.15 16 29 H 0.09 0.56 7.81 -51.93 -0.41 0.15 16 30 H 0.40 5.70 7.16 -40.82 -0.29 5.40 16 31 H 0.06 0.96 7.97 -51.93 -0.41 0.54 16 32 H 0.06 0.96 7.97 -51.93 -0.41 0.54 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 38 H 0.17 2.21 6.75 -52.48 -0.35 1.85 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -30.71 332.88 -7.93 -38.64 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.52 Total: 1.11 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.21 Total: -9.48 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.28 Total: -44.18 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.20 Total: -4.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.28 Total: -3.31 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.71 -7.93 -38.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.775 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds