Wall clock time and date at job start Tue Mar 31 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35779 * 116.99945 * 2 1 4 4 C 1.38671 * 119.57988 * 180.02562 * 3 2 1 5 5 C 1.39101 * 119.09200 * 179.68405 * 4 3 2 6 6 S 1.76198 * 120.85883 * 180.29784 * 5 4 3 7 7 C 1.81402 * 103.00075 * 0.26642 * 6 5 4 8 8 C 1.40171 * 118.28765 * 0.55235 * 5 4 3 9 9 N 1.40299 * 120.46522 * 179.73559 * 8 5 4 10 10 C 1.46500 * 120.00371 * 179.72761 * 9 8 5 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46957 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00340 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00296 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46692 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47025 * 119.99570 * 17 15 13 20 20 H 1.48492 * 109.46854 * 239.99727 * 17 15 13 21 21 C 1.38221 * 119.07764 * 359.47096 * 8 5 4 22 22 N 1.32214 * 120.81694 * 0.24986 * 21 8 5 23 23 H 1.09000 * 109.47324 * 300.00190 * 1 2 3 24 24 H 1.08999 * 109.46930 * 59.99519 * 1 2 3 25 25 H 1.08997 * 109.47577 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.45191 * 359.97438 * 4 3 2 27 27 H 1.08994 * 109.47444 * 180.02562 * 7 6 5 28 28 H 1.09007 * 109.46649 * 299.99848 * 7 6 5 29 29 H 1.08997 * 109.47016 * 59.99705 * 7 6 5 30 30 H 0.97010 * 119.99719 * 359.73349 * 9 8 5 31 31 H 1.09000 * 109.47175 * 60.00337 * 10 9 8 32 32 H 1.09001 * 109.47297 * 299.99844 * 10 9 8 33 33 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 34 34 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 35 35 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 36 36 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 37 37 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 38 38 H 1.08004 * 119.59335 * 180.27330 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.4307 1.2722 -0.0005 5 6 4.0516 2.5170 -0.0072 6 16 5.8085 2.6505 -0.0161 7 6 6.3494 0.9190 -0.0217 8 6 3.2437 3.6624 -0.0013 9 7 3.8218 4.9407 -0.0021 10 6 2.9678 6.1310 -0.0019 11 6 3.8425 7.3863 -0.0035 12 6 2.9505 8.6294 -0.0039 13 6 3.8120 9.8659 -0.0061 14 1 4.8881 9.7742 -0.0075 15 6 3.2265 11.1141 -0.0063 16 7 1.9161 11.2257 -0.0051 17 14 4.2944 12.6468 -0.0098 18 1 5.7260 12.2525 -0.0114 19 1 4.0008 13.4518 -1.2226 20 1 4.0051 13.4543 1.2023 21 6 1.8694 3.5150 -0.0002 22 7 1.3170 2.3138 0.0002 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 4.0194 0.3668 -0.0005 27 1 7.4386 0.8785 -0.0269 28 1 5.9718 0.4175 0.8695 29 1 5.9626 0.4204 -0.9105 30 1 4.7872 5.0364 -0.0028 31 1 2.3391 6.1269 0.8886 32 1 2.3379 6.1264 -0.8914 33 1 4.4727 7.3911 0.8858 34 1 4.4709 7.3902 -0.8941 35 1 2.3206 8.6244 -0.8933 36 1 2.3218 8.6257 0.8866 37 1 1.5040 12.1039 -0.0056 38 1 1.2389 4.3919 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168436335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:01 Heat of formation + Delta-G solvation = -33.115098 kcal Electronic energy + Delta-G solvation = -18991.032018 eV Core-core repulsion = 15958.848606 eV Total energy + Delta-G solvation = -3032.183412 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.56260 -39.23513 -37.35478 -35.47224 -33.81173 -33.14982 -30.37725 -29.82024 -28.26632 -27.62133 -25.49935 -24.31047 -23.13940 -22.08828 -19.76431 -18.71523 -18.36827 -17.67558 -17.01290 -16.95694 -16.49834 -16.30717 -16.08680 -15.41483 -15.10121 -14.96061 -14.83125 -14.33590 -14.29610 -13.84250 -13.71355 -13.60639 -13.29405 -12.85236 -12.72754 -12.51355 -12.39622 -12.33014 -11.69705 -11.61023 -11.48967 -11.44678 -11.17192 -10.67965 -10.66743 -10.54947 -8.96925 -8.19742 -8.08795 -6.30139 -0.05000 0.35567 0.41339 1.33496 1.40965 1.41623 1.54408 2.22987 2.39826 2.48057 2.69740 3.14254 3.40921 3.76674 3.92888 4.16155 4.23919 4.28190 4.30157 4.41339 4.44881 4.47907 4.54177 4.60826 4.70190 4.79222 4.87950 4.97034 4.99174 5.15320 5.18154 5.51600 5.73129 5.85163 6.03802 6.24789 6.30355 6.61920 6.86652 6.90664 7.39142 8.92216 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.003200 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.403847 B = 8747.293436 C = 9979.336120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.260 3.740 4 C -0.154 4.154 5 C -0.098 4.098 6 S -0.115 6.115 7 C -0.137 4.137 8 C 0.151 3.849 9 N -0.729 5.729 10 C 0.133 3.867 11 C -0.104 4.104 12 C 0.027 3.973 13 C -0.542 4.542 14 H 0.060 0.940 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.963 3.037 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.062 3.938 22 N -0.516 5.516 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.123 0.877 26 H 0.163 0.837 27 H 0.131 0.869 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.404 0.596 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.058 0.942 35 H -0.003 1.003 36 H -0.003 1.003 37 H 0.263 0.737 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -24.545 -0.014 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.229 6.229 3 C 0.077 3.923 4 C -0.181 4.181 5 C -0.222 4.222 6 S 0.125 5.875 7 C -0.306 4.306 8 C 0.039 3.961 9 N -0.360 5.360 10 C 0.009 3.991 11 C -0.142 4.142 12 C -0.011 4.011 13 C -0.580 4.580 14 H 0.078 0.922 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.788 3.212 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.100 4.100 22 N -0.240 5.240 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.141 0.859 26 H 0.181 0.819 27 H 0.149 0.851 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.240 0.760 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.072 0.928 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.704 -23.674 -0.016 24.136 hybrid contribution 0.123 0.319 0.003 0.342 sum 4.827 -23.354 -0.013 23.848 Atomic orbital electron populations 1.22972 0.76357 1.04374 1.01848 1.86173 1.23813 1.23845 1.89059 1.19582 0.89373 0.84841 0.98469 1.20913 0.92382 0.97433 1.07400 1.21597 0.98767 0.93900 1.07970 1.85500 0.95046 1.14986 1.91984 1.23853 1.06939 0.92862 1.06897 1.18391 0.93033 0.85495 0.99159 1.44795 1.08687 1.01231 1.81312 1.21369 0.93384 0.83327 1.00972 1.21561 0.98266 0.92973 1.01374 1.18919 0.94653 0.92089 0.95416 1.21708 0.93691 0.92214 1.50390 0.92153 1.25948 0.96266 1.02766 0.94821 1.70090 1.10733 1.24674 1.51724 0.85425 0.79220 0.78855 0.77717 1.18604 1.20467 1.20474 1.21968 0.90721 0.94302 1.02962 1.67199 1.40799 0.98545 1.17462 0.93044 0.93053 0.85863 0.81934 0.85105 0.88545 0.88553 0.75952 0.92222 0.92234 0.92307 0.92313 0.98429 0.98426 0.92782 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.38 113.37 1.18 1.89 16 2 O -0.32 -7.60 10.48 -91.08 -0.95 -8.55 16 3 C 0.26 6.93 7.48 84.73 0.63 7.57 16 4 C -0.15 -3.57 9.36 22.58 0.21 -3.36 16 5 C -0.10 -2.43 6.17 22.95 0.14 -2.29 16 6 S -0.11 -2.30 21.25 -56.49 -1.20 -3.50 16 7 C -0.14 -1.49 9.19 113.37 1.04 -0.45 16 8 C 0.15 4.28 6.69 38.25 0.26 4.54 16 9 N -0.73 -21.15 5.71 -338.35 -1.93 -23.08 16 10 C 0.13 4.33 4.93 86.38 0.43 4.76 16 11 C -0.10 -4.02 5.27 30.60 0.16 -3.86 16 12 C 0.03 1.37 4.97 29.85 0.15 1.52 16 13 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 17 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.06 1.81 10.48 84.63 0.89 2.70 16 22 N -0.52 -15.05 9.20 -308.69 -2.84 -17.89 16 23 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 24 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 25 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.16 2.82 6.06 -2.91 -0.02 2.80 16 27 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 0.90 7.78 -2.39 -0.02 0.88 16 29 H 0.10 0.90 7.81 -2.39 -0.02 0.89 16 30 H 0.40 11.22 7.16 -92.70 -0.66 10.56 16 31 H 0.06 1.94 7.97 -2.39 -0.02 1.92 16 32 H 0.06 1.94 7.97 -2.39 -0.02 1.92 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 37 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.16 4.58 6.75 -2.91 -0.02 4.56 16 Total: -1.00 -66.08 332.88 1.56 -64.52 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.40 Total: 15.01 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 5.78 Total: -16.60 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -4.49 Total: -96.79 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.95 Total: -8.55 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -1.20 Total: -3.50 kcal Total: -66.08 1.56 -64.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.410 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds