Wall clock time and date at job start Tue Mar 31 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86794 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47162 * 239.99740 * 3 2 1 5 5 H 1.48497 * 109.47432 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46860 * 120.00239 * 3 2 1 7 7 C 1.39934 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99838 * 189.85715 * 7 2 1 9 9 C 1.41425 * 120.00285 * 9.85570 * 7 2 1 10 10 C 1.40793 * 120.62267 * 208.58095 * 9 7 2 11 11 N 1.31468 * 120.56513 * 179.97438 * 10 9 7 12 12 C 1.32027 * 122.05402 * 359.69609 * 11 10 9 13 13 C 1.39294 * 121.20856 * 0.60055 * 12 11 10 14 14 N 1.39715 * 120.36285 * 179.69767 * 13 12 11 15 15 C 1.46500 * 120.00121 * 5.86813 * 14 13 12 16 16 C 1.50699 * 115.55062 * 65.34107 * 15 14 13 17 17 C 1.38609 * 120.07865 * 30.19314 * 16 15 14 18 18 C 1.38877 * 117.96918 * 179.97438 * 17 16 15 19 19 C 1.38608 * 117.97109 * 359.97438 * 18 17 16 20 20 N 1.31929 * 119.84509 * 359.97438 * 19 18 17 21 21 N 1.28352 * 122.18732 * 0.02562 * 20 19 18 22 22 C 1.53007 * 117.51835 * 211.04433 * 15 14 13 23 23 C 1.52997 * 59.99835 * 107.47791 * 22 15 14 24 24 C 1.38698 * 119.27496 * 359.41856 * 13 12 11 25 25 H 0.97000 * 119.99851 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.72321 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.39743 * 180.29293 * 12 11 10 28 28 H 0.97003 * 120.00345 * 185.87467 * 14 13 12 29 29 H 1.08006 * 121.01151 * 0.02562 * 17 16 15 30 30 H 1.08000 * 121.01368 * 179.73150 * 18 17 16 31 31 H 1.07993 * 120.07543 * 180.02562 * 19 18 17 32 32 H 1.09003 * 117.49247 * 214.97147 * 22 15 14 33 33 H 1.08995 * 117.49615 * 359.97438 * 22 15 14 34 34 H 1.08998 * 117.49893 * 252.50353 * 23 22 15 35 35 H 1.09006 * 117.49517 * 107.49155 * 23 22 15 36 36 H 1.07997 * 120.93117 * 180.30264 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0760 -1.2189 0.1596 9 6 1.3164 -2.4275 -0.2107 10 6 1.7944 -3.6298 0.3446 11 7 1.1505 -4.7591 0.1489 12 6 0.0391 -4.8180 -0.5614 13 6 -0.5012 -3.6781 -1.1522 14 7 -1.6748 -3.7618 -1.9055 15 6 -2.4141 -5.0248 -1.9719 16 6 -3.0165 -5.4944 -0.6729 17 6 -3.4188 -4.5717 0.2800 18 6 -3.9688 -5.0528 1.4610 19 6 -4.0819 -6.4258 1.6136 20 7 -3.6724 -7.2293 0.6507 21 7 -3.1642 -6.7848 -0.4409 22 6 -3.1865 -5.3250 -3.2582 23 6 -1.9020 -6.0930 -2.9402 24 6 0.1356 -2.4581 -0.9795 25 1 -0.4850 0.8401 0.0004 26 1 2.6979 -3.6244 0.9363 27 1 -0.4576 -5.7682 -0.6909 28 1 -2.0002 -2.9836 -2.3846 29 1 -3.3087 -3.5110 0.1089 30 1 -4.2947 -4.3778 2.2386 31 1 -4.5050 -6.8368 2.5182 32 1 -4.1303 -5.8622 -3.1647 33 1 -3.1449 -4.5826 -4.0551 34 1 -1.0152 -5.8560 -3.5280 35 1 -2.0008 -7.1355 -2.6376 36 1 -0.2625 -1.5567 -1.4215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168515777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:09 Heat of formation + Delta-G solvation = 117.587193 kcal Electronic energy + Delta-G solvation = -21327.908183 eV Core-core repulsion = 18199.108513 eV Total energy + Delta-G solvation = -3128.799670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97468 -38.75311 -37.43253 -34.02928 -33.34484 -32.81929 -31.91282 -30.24421 -27.92496 -25.64800 -24.84575 -24.34955 -22.54018 -21.73128 -21.35564 -20.05383 -17.52330 -17.11042 -16.86575 -16.16692 -16.01187 -15.27489 -15.09869 -14.75839 -14.55637 -14.20971 -13.73267 -13.16639 -12.91819 -12.70489 -12.51242 -11.69918 -11.51087 -11.42310 -11.28100 -11.15043 -11.01332 -10.91862 -10.72319 -10.56204 -10.08127 -10.01506 -9.70943 -9.55161 -9.37364 -9.14317 -8.11867 -7.73991 -6.84775 -6.54702 -4.52656 0.95896 1.02654 2.70718 3.00151 3.01660 3.04169 3.20462 3.52745 3.59815 3.86164 4.12670 4.22816 4.47635 4.64209 4.71457 4.87739 5.03935 5.13134 5.17199 5.25911 5.61943 5.63840 5.71701 5.97303 6.09622 6.11732 6.17371 6.29073 6.36285 6.51930 6.60016 6.83651 7.04424 7.11255 7.49217 7.65206 7.92344 8.11776 8.31480 8.55791 8.72158 8.79694 8.85348 9.70683 10.11412 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.004840 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.905210 B = 5783.499505 C = 5958.103949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.093 3.907 10 C -0.044 4.044 11 N -0.449 5.449 12 C -0.080 4.080 13 C 0.166 3.834 14 N -0.716 5.716 15 C 0.156 3.844 16 C 0.111 3.889 17 C -0.090 4.090 18 C -0.121 4.121 19 C 0.029 3.971 20 N -0.245 5.245 21 N -0.241 5.241 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.195 4.195 25 H 0.280 0.720 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.398 0.602 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.543 -3.148 -2.294 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.088 3.912 10 C -0.208 4.208 11 N -0.156 5.156 12 C -0.239 4.239 13 C 0.067 3.933 14 N -0.350 5.350 15 C 0.064 3.936 16 C -0.035 4.035 17 C -0.119 4.119 18 C -0.150 4.150 19 C -0.135 4.135 20 N -0.085 5.085 21 N -0.083 5.083 22 C -0.194 4.194 23 C -0.196 4.196 24 C -0.225 4.225 25 H 0.090 0.910 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.233 0.767 29 H 0.168 0.832 30 H 0.166 0.834 31 H 0.186 0.814 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.274 -5.495 -2.412 11.046 hybrid contribution -0.327 3.584 0.279 3.610 sum -9.600 -1.911 -2.133 10.018 Atomic orbital electron populations 1.69777 1.07478 1.29095 1.36230 1.25904 0.94870 1.01281 0.92203 0.86286 0.79991 0.79952 0.80029 1.18836 1.20386 1.18928 1.19498 0.95815 0.90135 1.42899 0.90132 1.18276 0.91406 0.93398 0.88099 1.22454 1.02741 0.88794 1.06812 1.66899 1.06428 1.29812 1.12470 1.21363 0.98120 0.95580 1.08863 1.18654 0.86398 0.95405 0.92854 1.43593 1.25001 1.09565 1.56841 1.18261 0.99830 0.89209 0.86343 1.22105 0.94297 0.91125 0.95979 1.22213 0.94047 1.02583 0.93054 1.22396 0.97580 0.96915 0.98060 1.24210 0.97688 0.91798 0.99816 1.72981 1.06448 1.32081 0.97032 1.72775 1.09336 1.13262 1.12974 1.23273 0.97012 1.03298 0.95784 1.23428 0.97132 0.97925 1.01078 1.21155 1.00791 0.94544 1.06019 0.90960 0.85881 0.86643 0.76677 0.83229 0.83442 0.81413 0.88158 0.87848 0.87900 0.87078 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.51 10.82 55.55 0.60 -18.91 16 2 C 0.07 1.78 5.29 -17.34 -0.09 1.69 16 3 Si 0.91 17.96 29.57 -169.99 -5.03 12.94 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.56 9.09 -37.73 -0.34 -11.90 16 8 H 0.08 1.97 7.86 -52.49 -0.41 1.55 16 9 C 0.09 2.43 5.56 -106.70 -0.59 1.84 16 10 C -0.04 -1.12 10.97 -16.74 -0.18 -1.31 16 11 N -0.45 -11.49 10.33 -12.37 -0.13 -11.61 16 12 C -0.08 -1.90 10.10 -17.08 -0.17 -2.07 16 13 C 0.17 3.68 6.49 -83.70 -0.54 3.14 16 14 N -0.72 -12.47 5.01 -47.00 -0.24 -12.70 16 15 C 0.16 2.42 1.66 -132.97 -0.22 2.20 16 16 C 0.11 1.82 5.14 -82.41 -0.42 1.39 16 17 C -0.09 -1.39 9.55 -39.21 -0.37 -1.76 16 18 C -0.12 -1.57 10.21 -39.21 -0.40 -1.97 16 19 C 0.03 0.38 11.31 -17.37 -0.20 0.19 16 20 N -0.24 -3.97 11.50 30.55 0.35 -3.62 16 21 N -0.24 -4.12 10.49 33.59 0.35 -3.77 16 22 C -0.16 -1.89 10.16 -26.73 -0.27 -2.16 16 23 C -0.16 -2.25 9.42 -26.73 -0.25 -2.50 16 24 C -0.19 -4.78 8.64 -38.39 -0.33 -5.11 16 25 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 26 H 0.12 2.95 8.06 -52.49 -0.42 2.53 16 27 H 0.12 2.68 5.97 -52.49 -0.31 2.36 16 28 H 0.40 6.26 8.86 -40.82 -0.36 5.90 16 29 H 0.15 2.33 7.77 -52.48 -0.41 1.92 16 30 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.11 1.61 7.56 -51.93 -0.39 1.22 16 36 H 0.13 3.18 6.28 -52.49 -0.33 2.85 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -29.33 313.82 -7.64 -36.97 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -3.89 Total: 14.33 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -4.40 Total: -18.35 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.94 Total: -50.62 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.33 -7.64 -36.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168515777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.560 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds