Wall clock time and date at job start Tue Mar 31 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86794 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47162 * 239.99740 * 3 2 1 5 5 H 1.48497 * 109.47432 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46860 * 120.00239 * 3 2 1 7 7 C 1.39934 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99838 * 189.85715 * 7 2 1 9 9 C 1.41425 * 120.00285 * 9.85570 * 7 2 1 10 10 C 1.40793 * 120.62267 * 208.58095 * 9 7 2 11 11 N 1.31468 * 120.56513 * 179.97438 * 10 9 7 12 12 C 1.32027 * 122.05402 * 359.69609 * 11 10 9 13 13 C 1.39294 * 121.20856 * 0.60055 * 12 11 10 14 14 N 1.39715 * 120.36285 * 179.69767 * 13 12 11 15 15 C 1.46500 * 120.00121 * 5.86813 * 14 13 12 16 16 C 1.50699 * 115.55062 * 65.34107 * 15 14 13 17 17 C 1.38609 * 120.07865 * 30.19314 * 16 15 14 18 18 C 1.38877 * 117.96918 * 179.97438 * 17 16 15 19 19 C 1.38608 * 117.97109 * 359.97438 * 18 17 16 20 20 N 1.31929 * 119.84509 * 359.97438 * 19 18 17 21 21 N 1.28352 * 122.18732 * 0.02562 * 20 19 18 22 22 C 1.53007 * 117.51835 * 211.04433 * 15 14 13 23 23 C 1.52997 * 59.99835 * 107.47791 * 22 15 14 24 24 C 1.38698 * 119.27496 * 359.41856 * 13 12 11 25 25 H 0.97000 * 119.99851 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.72321 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.39743 * 180.29293 * 12 11 10 28 28 H 0.97003 * 120.00345 * 185.87467 * 14 13 12 29 29 H 1.08006 * 121.01151 * 0.02562 * 17 16 15 30 30 H 1.08000 * 121.01368 * 179.73150 * 18 17 16 31 31 H 1.07993 * 120.07543 * 180.02562 * 19 18 17 32 32 H 1.09003 * 117.49247 * 214.97147 * 22 15 14 33 33 H 1.08995 * 117.49615 * 359.97438 * 22 15 14 34 34 H 1.08998 * 117.49893 * 252.50353 * 23 22 15 35 35 H 1.09006 * 117.49517 * 107.49155 * 23 22 15 36 36 H 1.07997 * 120.93117 * 180.30264 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0760 -1.2189 0.1596 9 6 1.3164 -2.4275 -0.2107 10 6 1.7944 -3.6298 0.3446 11 7 1.1505 -4.7591 0.1489 12 6 0.0391 -4.8180 -0.5614 13 6 -0.5012 -3.6781 -1.1522 14 7 -1.6748 -3.7618 -1.9055 15 6 -2.4141 -5.0248 -1.9719 16 6 -3.0165 -5.4944 -0.6729 17 6 -3.4188 -4.5717 0.2800 18 6 -3.9688 -5.0528 1.4610 19 6 -4.0819 -6.4258 1.6136 20 7 -3.6724 -7.2293 0.6507 21 7 -3.1642 -6.7848 -0.4409 22 6 -3.1865 -5.3250 -3.2582 23 6 -1.9020 -6.0930 -2.9402 24 6 0.1356 -2.4581 -0.9795 25 1 -0.4850 0.8401 0.0004 26 1 2.6979 -3.6244 0.9363 27 1 -0.4576 -5.7682 -0.6909 28 1 -2.0002 -2.9836 -2.3846 29 1 -3.3087 -3.5110 0.1089 30 1 -4.2947 -4.3778 2.2386 31 1 -4.5050 -6.8368 2.5182 32 1 -4.1303 -5.8622 -3.1647 33 1 -3.1449 -4.5826 -4.0551 34 1 -1.0152 -5.8560 -3.5280 35 1 -2.0008 -7.1355 -2.6376 36 1 -0.2625 -1.5567 -1.4215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168515777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:09 Heat of formation + Delta-G solvation = 99.442297 kcal Electronic energy + Delta-G solvation = -21328.695005 eV Core-core repulsion = 18199.108513 eV Total energy + Delta-G solvation = -3129.586492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.13415 -40.41178 -38.85785 -35.87161 -34.83203 -34.04285 -33.04383 -32.14155 -29.61638 -27.51527 -26.03725 -25.49219 -24.00284 -23.27180 -22.93601 -21.48564 -19.21265 -18.27841 -18.10110 -17.77115 -17.37794 -17.10544 -16.56863 -16.21796 -15.82906 -15.55531 -15.12058 -14.66465 -14.37339 -14.21355 -13.87707 -13.52444 -13.20659 -13.14109 -12.73390 -12.52131 -12.36379 -12.25695 -12.11511 -11.95244 -11.77137 -11.21376 -11.18663 -11.07940 -10.70461 -10.37474 -10.05003 -9.65231 -8.64817 -8.24234 -6.46089 -0.16565 -0.08507 0.90600 1.15665 1.41764 1.52025 1.55872 2.21609 2.25160 2.42359 2.79417 3.00055 3.01483 3.37561 3.68459 3.75342 3.80767 3.94410 4.03239 4.08454 4.20962 4.23887 4.51954 4.63478 4.67326 4.84120 4.87922 4.94168 4.97368 5.08892 5.18141 5.21687 5.26774 5.30065 5.67915 5.82229 6.01133 6.30479 6.70067 6.74643 6.82651 7.02428 7.70293 7.77847 8.32010 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.004840 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.905210 B = 5783.499505 C = 5958.103949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.484 4.484 8 H 0.081 0.919 9 C 0.072 3.928 10 C -0.071 4.071 11 N -0.463 5.463 12 C -0.090 4.090 13 C 0.190 3.810 14 N -0.702 5.702 15 C 0.130 3.870 16 C 0.100 3.900 17 C -0.114 4.114 18 C -0.110 4.110 19 C 0.033 3.967 20 N -0.272 5.272 21 N -0.264 5.264 22 C -0.119 4.119 23 C -0.163 4.163 24 C -0.214 4.214 25 H 0.289 0.711 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.407 0.593 29 H 0.144 0.856 30 H 0.183 0.817 31 H 0.210 0.790 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 -2.128 -2.365 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.514 4.514 8 H 0.099 0.901 9 C 0.067 3.933 10 C -0.235 4.235 11 N -0.171 5.171 12 C -0.250 4.250 13 C 0.088 3.912 14 N -0.334 5.334 15 C 0.039 3.961 16 C -0.046 4.046 17 C -0.143 4.143 18 C -0.139 4.139 19 C -0.131 4.131 20 N -0.113 5.113 21 N -0.106 5.106 22 C -0.157 4.157 23 C -0.202 4.202 24 C -0.245 4.245 25 H 0.100 0.900 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.244 0.756 29 H 0.161 0.839 30 H 0.200 0.800 31 H 0.226 0.774 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.733 -4.506 -2.509 11.908 hybrid contribution -0.012 3.201 0.334 3.218 sum -10.745 -1.305 -2.174 11.040 Atomic orbital electron populations 1.69816 1.08693 1.30567 1.35457 1.26714 0.95687 1.04202 0.91121 0.85188 0.78687 0.75492 0.79980 1.18502 1.19121 1.18656 1.19766 0.96128 0.91073 1.44391 0.90110 1.18584 0.92294 0.93856 0.88541 1.22534 1.03604 0.89028 1.08325 1.66841 1.07196 1.30044 1.13008 1.21468 0.98005 0.96253 1.09250 1.18508 0.87074 0.93963 0.91691 1.43516 1.23472 1.10994 1.55446 1.18507 1.01468 0.88571 0.87582 1.22171 0.94752 0.91256 0.96457 1.22340 0.95439 1.02252 0.94298 1.22830 0.95766 0.97566 0.97746 1.24852 0.96307 0.91763 1.00198 1.72889 1.07422 1.33274 0.97667 1.72719 1.10442 1.13550 1.13919 1.23395 0.96349 1.02192 0.93715 1.23393 0.98434 0.97533 1.00829 1.21109 1.01262 0.95129 1.07019 0.90027 0.85500 0.86267 0.75579 0.83856 0.79990 0.77362 0.86773 0.85585 0.88390 0.87528 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.74 10.82 21.82 0.24 -39.50 16 2 C 0.04 1.82 5.29 85.25 0.45 2.27 16 3 Si 0.99 36.11 29.57 68.60 2.03 38.14 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 7 C -0.48 -25.12 9.09 23.47 0.21 -24.91 16 8 H 0.08 4.03 7.86 -2.91 -0.02 4.01 16 9 C 0.07 3.87 5.56 -21.21 -0.12 3.76 16 10 C -0.07 -3.79 10.97 85.37 0.94 -2.85 16 11 N -0.46 -24.31 10.33 -193.05 -1.99 -26.31 16 12 C -0.09 -4.33 10.10 84.92 0.86 -3.48 16 13 C 0.19 8.47 6.49 38.25 0.25 8.71 16 14 N -0.70 -24.01 5.01 -302.62 -1.51 -25.52 16 15 C 0.13 3.91 1.66 2.86 0.00 3.92 16 16 C 0.10 3.21 5.14 42.63 0.22 3.43 16 17 C -0.11 -3.43 9.55 22.51 0.22 -3.21 16 18 C -0.11 -2.64 10.21 22.51 0.23 -2.41 16 19 C 0.03 0.80 11.31 84.77 0.96 1.76 16 20 N -0.27 -8.57 11.50 -57.26 -0.66 -9.23 16 21 N -0.26 -8.92 10.49 -47.63 -0.50 -9.42 16 22 C -0.12 -2.61 10.16 30.60 0.31 -2.30 16 23 C -0.16 -4.53 9.42 30.59 0.29 -4.25 16 24 C -0.21 -10.71 8.64 23.04 0.20 -10.51 16 25 H 0.29 12.62 8.30 -92.71 -0.77 11.85 16 26 H 0.13 6.37 8.06 -2.91 -0.02 6.34 16 27 H 0.12 5.61 5.97 -2.91 -0.02 5.59 16 28 H 0.41 12.40 8.86 -92.71 -0.82 11.58 16 29 H 0.14 4.39 7.77 -2.91 -0.02 4.37 16 30 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.21 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.11 3.07 7.56 -2.38 -0.02 3.05 16 36 H 0.12 6.18 6.28 -2.91 -0.02 6.16 16 Total: -1.00 -64.56 313.82 2.91 -61.64 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: 0.30 Total: 40.26 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 5.01 Total: -30.07 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.43 Total: -109.98 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -64.56 2.91 -61.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168515777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.084 kcal (2) G-P(sol) polarization free energy of solvation -64.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds