Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39668 * 120.00191 * 2 1 4 4 C 1.38989 * 120.04061 * 0.02562 * 3 2 1 5 5 C 1.38138 * 120.08012 * 180.02562 * 4 3 2 6 6 C 1.38178 * 120.14669 * 359.97232 * 5 4 3 7 7 C 1.38959 * 120.06905 * 0.02562 * 6 5 4 8 8 N 1.39732 * 120.03423 * 180.02562 * 7 6 5 9 9 C 1.38305 * 119.99886 * 354.46143 * 8 7 6 10 10 C 1.39004 * 119.99767 * 299.90329 * 9 8 7 11 11 H 1.07996 * 120.00098 * 150.97944 * 10 9 8 12 12 C 1.40831 * 119.99951 * 330.97415 * 10 9 8 13 13 N 1.30335 * 120.00152 * 168.66258 * 12 10 9 14 14 Si 1.86801 * 120.00019 * 348.65785 * 12 10 9 15 15 H 1.48503 * 109.46881 * 89.28336 * 14 12 10 16 16 H 1.48499 * 109.47093 * 209.28375 * 14 12 10 17 17 H 1.48498 * 109.47318 * 329.28468 * 14 12 10 18 18 C 1.41151 * 120.00106 * 119.90369 * 9 8 7 19 19 C 1.43201 * 120.00142 * 174.55020 * 18 9 8 20 20 N 9.45708 * 139.31724 * 5.63065 * 2 1 3 21 21 C 1.43206 * 120.00355 * 354.54760 * 18 9 8 22 22 N 7.17382 * 145.40924 * 49.15395 * 2 1 3 23 23 C 1.38759 * 120.03435 * 179.72774 * 3 2 1 24 24 C 1.50700 * 120.07375 * 359.97438 * 23 3 2 25 25 H 1.09000 * 109.47204 * 59.98782 * 1 2 3 26 26 H 1.09005 * 109.46460 * 299.99917 * 1 2 3 27 27 H 1.08994 * 109.47444 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99703 * 180.02562 * 2 1 3 29 29 H 1.08008 * 119.96027 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.92857 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.96109 * 180.02562 * 6 5 4 32 32 H 0.96998 * 119.99980 * 174.46580 * 8 7 6 33 33 H 0.97002 * 120.00709 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.46639 * 89.99803 * 24 23 3 35 35 H 1.08999 * 109.47188 * 209.99880 * 24 23 3 36 36 H 1.08999 * 109.47208 * 329.99732 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4693 2.4137 0.0005 5 6 2.1592 3.6105 0.0000 6 6 3.5410 3.6149 -0.0005 7 6 4.2411 2.4146 -0.0010 8 7 5.6384 2.4199 -0.0009 9 6 6.3254 3.6148 -0.1160 10 6 6.1501 4.4116 -1.2414 11 1 6.2691 5.4826 -1.1687 12 6 5.8174 3.8224 -2.4765 13 7 5.4376 4.5703 -3.4741 14 14 5.9205 1.9689 -2.6851 15 1 4.6219 1.3554 -2.3074 16 1 6.2269 1.6465 -4.1019 17 1 6.9945 1.4315 -1.8116 18 6 7.2044 4.0251 0.9093 19 6 8.0031 5.2015 0.7395 20 7 8.6366 6.1350 0.6049 21 6 7.2976 3.2650 2.1194 22 7 7.3707 2.6636 3.0808 23 6 3.5510 1.2103 0.0057 24 6 4.3069 -0.0934 0.0125 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3632 0.5139 0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9499 -0.8400 -0.0004 29 1 0.3892 2.4138 0.0014 30 1 1.6175 4.5447 0.0008 31 1 4.0774 4.5523 -0.0005 32 1 6.1266 1.5857 0.0797 33 1 5.2081 4.1645 -4.3247 34 1 4.4933 -0.4105 -1.0135 35 1 5.2569 0.0402 0.5298 36 1 3.7171 -0.8526 0.5261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = 89.537713 kcal Electronic energy + Delta-G solvation = -21482.688212 eV Core-core repulsion = 18352.672225 eV Total energy + Delta-G solvation = -3130.015987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.82578 -37.58176 -35.58468 -34.76805 -34.59026 -33.81064 -32.39847 -30.30636 -28.02611 -27.27959 -26.67370 -25.51935 -22.01143 -20.99197 -20.45017 -18.91549 -17.54651 -17.26480 -16.85284 -16.17751 -15.27368 -14.93542 -14.54351 -14.42571 -13.68756 -13.51428 -13.09894 -12.90587 -12.83347 -12.72136 -12.51683 -12.50249 -11.99702 -11.96275 -11.71418 -11.66014 -11.55320 -11.44665 -11.04222 -11.00474 -10.81028 -10.67014 -10.52996 -10.20636 -9.79080 -9.20903 -8.21141 -7.70980 -7.22816 -6.79045 -5.41331 1.86773 2.03402 2.31513 2.77937 2.86800 2.93382 3.48299 3.54574 3.82294 3.92579 4.04214 4.24693 4.37599 4.41690 5.08114 5.13212 5.26883 5.28336 5.43781 5.48648 5.53252 5.64932 5.79103 5.86231 5.93528 5.98954 6.16627 6.18312 6.41062 6.44136 6.68359 6.86778 6.95502 7.16732 7.21797 7.36811 7.53741 7.66625 7.80145 7.86577 8.13064 8.31080 8.91945 9.12550 9.23547 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.006975 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.825706 B = 4013.414898 C = 4604.541743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.757 5.757 3 C 0.241 3.759 4 C -0.243 4.243 5 C -0.044 4.044 6 C -0.205 4.205 7 C 0.255 3.745 8 N -0.691 5.691 9 C 0.343 3.657 10 C -0.357 4.357 11 H 0.121 0.879 12 C 0.081 3.919 13 N -0.730 5.730 14 Si 0.917 3.083 15 H -0.235 1.235 16 H -0.290 1.290 17 H -0.255 1.255 18 C -0.297 4.297 19 C 0.323 3.677 20 N -0.527 5.527 21 C 0.309 3.691 22 N -0.532 5.532 23 C -0.227 4.227 24 C -0.100 4.100 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.396 0.604 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.399 0.601 33 H 0.303 0.697 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 -10.139 -2.826 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.389 5.389 3 C 0.138 3.862 4 C -0.267 4.267 5 C -0.064 4.064 6 C -0.228 4.228 7 C 0.154 3.846 8 N -0.319 5.319 9 C 0.240 3.760 10 C -0.384 4.384 11 H 0.138 0.862 12 C -0.150 4.150 13 N -0.348 5.348 14 Si 0.742 3.258 15 H -0.159 1.159 16 H -0.218 1.218 17 H -0.179 1.179 18 C -0.315 4.315 19 C 0.015 3.985 20 N -0.208 5.208 21 C 0.002 3.998 22 N -0.214 5.214 23 C -0.235 4.235 24 C -0.157 4.157 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.231 0.769 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.154 0.846 32 H 0.238 0.762 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.855 -9.333 -1.824 14.431 hybrid contribution 0.048 -1.364 -0.619 1.498 sum -10.807 -10.696 -2.443 15.400 Atomic orbital electron populations 1.21426 0.80774 1.01526 1.00926 1.44395 1.05195 1.05498 1.83831 1.17167 0.89605 0.85965 0.93439 1.20310 0.98718 0.91120 1.16545 1.20605 0.93534 0.96842 0.95390 1.20809 0.93971 0.97312 1.10704 1.17194 0.81912 0.93117 0.92390 1.42447 1.03372 1.08477 1.77644 1.16817 0.86745 0.81645 0.90743 1.20059 1.29466 0.98373 0.90491 0.86168 1.26657 0.90048 1.03286 0.95047 1.69386 1.21214 1.40675 1.03531 0.86158 0.82369 0.79639 0.77657 1.15891 1.21781 1.17919 1.12916 1.19814 1.03193 0.95604 1.24653 0.90883 0.91121 0.91865 1.81069 1.15442 1.14152 1.10179 1.25212 0.91206 0.91889 0.91502 1.81079 1.14275 1.13569 1.12462 1.18578 0.91769 0.93753 1.19427 1.20479 0.99493 0.94493 1.01204 0.93265 0.93262 0.91563 0.76926 0.87091 0.86512 0.84561 0.76192 0.88502 0.92276 0.92183 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 9.94 59.85 0.59 1.47 16 2 N -0.76 -8.83 5.79 -65.42 -0.38 -9.21 16 3 C 0.24 3.59 6.63 -83.82 -0.56 3.04 16 4 C -0.24 -3.61 9.31 -39.34 -0.37 -3.98 16 5 C -0.04 -0.70 10.03 -39.64 -0.40 -1.10 16 6 C -0.20 -3.71 8.83 -39.34 -0.35 -4.06 16 7 C 0.25 4.57 4.48 -83.78 -0.38 4.20 16 8 N -0.69 -12.80 2.14 -8.20 -0.02 -12.82 16 9 C 0.34 7.00 4.44 -83.55 -0.37 6.63 16 10 C -0.36 -7.60 7.04 -38.32 -0.27 -7.87 16 11 H 0.12 2.79 7.52 -52.49 -0.39 2.40 16 12 C 0.08 1.67 5.35 -17.21 -0.09 1.58 16 13 N -0.73 -15.39 13.90 55.59 0.77 -14.62 16 14 Si 0.92 16.46 24.00 -169.99 -4.08 12.38 16 15 H -0.24 -4.09 4.77 56.52 0.27 -3.82 16 16 H -0.29 -5.25 7.11 56.52 0.40 -4.85 16 17 H -0.25 -4.50 6.53 56.52 0.37 -4.13 16 18 C -0.30 -6.45 5.88 -104.94 -0.62 -7.07 16 19 C 0.32 7.48 14.07 -22.47 -0.32 7.17 16 20 N -0.53 -12.78 18.54 41.84 0.78 -12.01 16 21 C 0.31 6.89 14.82 -22.46 -0.33 6.55 16 22 N -0.53 -12.29 18.54 41.85 0.78 -11.52 16 23 C -0.23 -3.65 4.89 -104.22 -0.51 -4.16 16 24 C -0.10 -1.34 8.77 36.01 0.32 -1.03 16 25 H 0.05 0.44 7.95 -51.93 -0.41 0.02 16 26 H 0.05 0.43 7.95 -51.93 -0.41 0.02 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.40 4.04 6.82 -40.82 -0.28 3.76 16 29 H 0.11 1.41 6.72 -52.48 -0.35 1.06 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.14 2.63 6.13 -52.49 -0.32 2.31 16 32 H 0.40 6.97 5.68 -40.82 -0.23 6.74 16 33 H 0.30 5.74 8.29 -40.82 -0.34 5.40 16 34 H 0.06 0.76 7.34 -51.93 -0.38 0.38 16 35 H 0.06 0.82 6.49 -51.93 -0.34 0.49 16 36 H 0.06 0.64 6.55 -51.93 -0.34 0.30 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -25.76 309.45 -4.74 -30.50 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -3.61 Total: 11.26 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -3.64 Total: 1.37 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 1.93 Total: -60.17 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -4.08 Total: 12.38 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -25.76 -4.74 -30.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.033 kcal (2) G-P(sol) polarization free energy of solvation -25.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds