Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39668 * 120.00191 * 2 1 4 4 C 1.38989 * 120.04061 * 0.02562 * 3 2 1 5 5 C 1.38138 * 120.08012 * 180.02562 * 4 3 2 6 6 C 1.38178 * 120.14669 * 359.97232 * 5 4 3 7 7 C 1.38959 * 120.06905 * 0.02562 * 6 5 4 8 8 N 1.39732 * 120.03423 * 180.02562 * 7 6 5 9 9 C 1.38305 * 119.99886 * 354.46143 * 8 7 6 10 10 C 1.39004 * 119.99767 * 299.90329 * 9 8 7 11 11 H 1.07996 * 120.00098 * 150.97944 * 10 9 8 12 12 C 1.40831 * 119.99951 * 330.97415 * 10 9 8 13 13 N 1.30335 * 120.00152 * 168.66258 * 12 10 9 14 14 Si 1.86801 * 120.00019 * 348.65785 * 12 10 9 15 15 H 1.48503 * 109.46881 * 89.28336 * 14 12 10 16 16 H 1.48499 * 109.47093 * 209.28375 * 14 12 10 17 17 H 1.48498 * 109.47318 * 329.28468 * 14 12 10 18 18 C 1.41151 * 120.00106 * 119.90369 * 9 8 7 19 19 C 1.43201 * 120.00142 * 174.55020 * 18 9 8 20 20 N 9.45708 * 139.31724 * 5.63065 * 2 1 3 21 21 C 1.43206 * 120.00355 * 354.54760 * 18 9 8 22 22 N 7.17382 * 145.40924 * 49.15395 * 2 1 3 23 23 C 1.38759 * 120.03435 * 179.72774 * 3 2 1 24 24 C 1.50700 * 120.07375 * 359.97438 * 23 3 2 25 25 H 1.09000 * 109.47204 * 59.98782 * 1 2 3 26 26 H 1.09005 * 109.46460 * 299.99917 * 1 2 3 27 27 H 1.08994 * 109.47444 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99703 * 180.02562 * 2 1 3 29 29 H 1.08008 * 119.96027 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.92857 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.96109 * 180.02562 * 6 5 4 32 32 H 0.96998 * 119.99980 * 174.46580 * 8 7 6 33 33 H 0.97002 * 120.00709 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.46639 * 89.99803 * 24 23 3 35 35 H 1.08999 * 109.47188 * 209.99880 * 24 23 3 36 36 H 1.08999 * 109.47208 * 329.99732 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4693 2.4137 0.0005 5 6 2.1592 3.6105 0.0000 6 6 3.5410 3.6149 -0.0005 7 6 4.2411 2.4146 -0.0010 8 7 5.6384 2.4199 -0.0009 9 6 6.3254 3.6148 -0.1160 10 6 6.1501 4.4116 -1.2414 11 1 6.2691 5.4826 -1.1687 12 6 5.8174 3.8224 -2.4765 13 7 5.4376 4.5703 -3.4741 14 14 5.9205 1.9689 -2.6851 15 1 4.6219 1.3554 -2.3074 16 1 6.2269 1.6465 -4.1019 17 1 6.9945 1.4315 -1.8116 18 6 7.2044 4.0251 0.9093 19 6 8.0031 5.2015 0.7395 20 7 8.6366 6.1350 0.6049 21 6 7.2976 3.2650 2.1194 22 7 7.3707 2.6636 3.0808 23 6 3.5510 1.2103 0.0057 24 6 4.3069 -0.0934 0.0125 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3632 0.5139 0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9499 -0.8400 -0.0004 29 1 0.3892 2.4138 0.0014 30 1 1.6175 4.5447 0.0008 31 1 4.0774 4.5523 -0.0005 32 1 6.1266 1.5857 0.0797 33 1 5.2081 4.1645 -4.3247 34 1 4.4933 -0.4105 -1.0135 35 1 5.2569 0.0402 0.5298 36 1 3.7171 -0.8526 0.5261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = 75.430991 kcal Electronic energy + Delta-G solvation = -21483.299925 eV Core-core repulsion = 18352.672225 eV Total energy + Delta-G solvation = -3130.627700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.10598 -38.98328 -37.20426 -36.57343 -35.98708 -35.24378 -33.69177 -31.70024 -29.27529 -28.98095 -27.74967 -26.49501 -23.49477 -22.19430 -21.87158 -20.50591 -19.14113 -18.60237 -18.10092 -17.74930 -16.57151 -16.16107 -15.71246 -15.51190 -14.92687 -14.73436 -14.59678 -14.48777 -14.27240 -14.18297 -14.02448 -13.57289 -13.44946 -13.39649 -13.35629 -13.11059 -12.92588 -12.78026 -12.72686 -12.59512 -12.14547 -12.04939 -11.78835 -11.60766 -11.10389 -10.48885 -9.79845 -9.30869 -8.44513 -8.04343 -7.15892 0.34990 0.76244 0.99957 1.29029 1.44507 1.50949 2.00746 2.02429 2.19573 2.22970 2.52457 2.65148 2.87209 3.14809 3.35823 3.73597 4.11680 4.20784 4.36505 4.43162 4.49996 4.70115 4.75472 4.77766 4.81877 4.84306 4.86059 4.93827 5.03017 5.30363 5.45043 5.52119 5.54815 5.70097 5.79461 5.91575 6.03342 6.17291 6.54064 6.67817 6.80050 6.98696 7.13378 7.29581 7.67177 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.006975 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.825706 B = 4013.414898 C = 4604.541743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.750 5.750 3 C 0.240 3.760 4 C -0.242 4.242 5 C -0.049 4.049 6 C -0.232 4.232 7 C 0.235 3.765 8 N -0.690 5.690 9 C 0.359 3.641 10 C -0.360 4.360 11 H 0.092 0.908 12 C 0.059 3.941 13 N -0.753 5.753 14 Si 0.956 3.044 15 H -0.223 1.223 16 H -0.288 1.288 17 H -0.250 1.250 18 C -0.307 4.307 19 C 0.327 3.673 20 N -0.554 5.554 21 C 0.318 3.682 22 N -0.546 5.546 23 C -0.235 4.235 24 C -0.101 4.101 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.404 0.596 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.112 0.888 32 H 0.405 0.595 33 H 0.314 0.686 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.596 -12.763 -3.209 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.381 5.381 3 C 0.135 3.865 4 C -0.266 4.266 5 C -0.068 4.068 6 C -0.256 4.256 7 C 0.136 3.864 8 N -0.320 5.320 9 C 0.255 3.745 10 C -0.387 4.387 11 H 0.110 0.890 12 C -0.170 4.170 13 N -0.371 5.371 14 Si 0.778 3.222 15 H -0.146 1.146 16 H -0.215 1.215 17 H -0.174 1.174 18 C -0.326 4.326 19 C 0.020 3.980 20 N -0.236 5.236 21 C 0.012 3.988 22 N -0.229 5.229 23 C -0.244 4.244 24 C -0.158 4.158 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.240 0.760 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.130 0.870 32 H 0.245 0.755 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.825 -11.982 -2.202 17.689 hybrid contribution 0.477 -0.532 -0.543 0.897 sum -12.348 -12.514 -2.745 17.793 Atomic orbital electron populations 1.21644 0.78901 1.03594 1.01058 1.44538 1.06429 1.04690 1.82480 1.17341 0.89518 0.87282 0.92360 1.20593 0.99940 0.90690 1.15387 1.20824 0.92815 0.98282 0.94884 1.20756 0.95059 0.96648 1.13114 1.17350 0.81363 0.93902 0.93796 1.42331 1.03789 1.07738 1.78127 1.16594 0.85933 0.82292 0.89652 1.19961 1.29872 0.97246 0.91641 0.89007 1.27221 0.89344 1.06180 0.94290 1.69379 1.21321 1.42185 1.04244 0.85596 0.83038 0.75934 0.77679 1.14589 1.21535 1.17375 1.12982 1.20543 1.03029 0.96050 1.24910 0.90599 0.91183 0.91272 1.81048 1.16582 1.15017 1.11001 1.25174 0.90776 0.91590 0.91303 1.81072 1.14943 1.14146 1.12754 1.18868 0.92559 0.94030 1.18938 1.20548 0.99394 0.93813 1.02055 0.93075 0.93063 0.88704 0.75958 0.84741 0.84966 0.86983 0.75520 0.87341 0.91374 0.92655 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 9.94 127.77 1.27 2.52 16 2 N -0.75 -14.56 5.79 -360.88 -2.09 -16.65 16 3 C 0.24 6.45 6.63 38.20 0.25 6.70 16 4 C -0.24 -6.59 9.31 22.43 0.21 -6.38 16 5 C -0.05 -1.50 10.03 22.23 0.22 -1.27 16 6 C -0.23 -8.44 8.83 22.43 0.20 -8.24 16 7 C 0.24 8.23 4.48 38.19 0.17 8.40 16 8 N -0.69 -25.13 2.14 -179.85 -0.38 -25.51 16 9 C 0.36 14.81 4.44 39.02 0.17 14.98 16 10 C -0.36 -15.72 7.04 23.09 0.16 -15.56 16 11 H 0.09 4.49 7.52 -2.91 -0.02 4.47 16 12 C 0.06 2.44 5.35 85.55 0.46 2.90 16 13 N -0.75 -31.80 13.90 21.98 0.31 -31.50 16 14 Si 0.96 32.47 24.00 68.60 1.65 34.11 16 15 H -0.22 -7.11 4.77 99.48 0.47 -6.64 16 16 H -0.29 -9.65 7.11 99.48 0.71 -8.95 16 17 H -0.25 -8.25 6.53 99.48 0.65 -7.60 16 18 C -0.31 -13.53 5.88 -20.07 -0.12 -13.65 16 19 C 0.33 15.52 14.07 88.33 1.24 16.76 16 20 N -0.55 -27.51 18.54 19.01 0.35 -27.15 16 21 C 0.32 14.17 14.82 88.33 1.31 15.48 16 22 N -0.55 -25.04 18.54 19.01 0.35 -24.69 16 23 C -0.24 -7.03 4.89 -19.60 -0.10 -7.13 16 24 C -0.10 -2.42 8.77 71.24 0.62 -1.80 16 25 H 0.05 0.71 7.95 -2.39 -0.02 0.69 16 26 H 0.05 0.71 7.95 -2.38 -0.02 0.69 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.40 6.53 6.82 -92.71 -0.63 5.89 16 29 H 0.13 2.96 6.72 -2.91 -0.02 2.94 16 30 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 31 H 0.11 4.53 6.13 -2.91 -0.02 4.51 16 32 H 0.40 13.63 5.68 -92.71 -0.53 13.10 16 33 H 0.31 11.74 8.29 -92.71 -0.77 10.97 16 34 H 0.07 1.51 7.34 -2.39 -0.02 1.50 16 35 H 0.05 1.38 6.49 -2.39 -0.02 1.37 16 36 H 0.08 1.52 6.55 -2.39 -0.02 1.50 16 Total: -1.00 -55.00 309.45 5.98 -49.02 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.28 Total: 28.66 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.08 Total: 13.71 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -1.46 Total: -125.50 kcal Atomic # 14 Polarization: 32.47 SS G_CDS: 1.65 Total: 34.11 kcal Total: -55.00 5.98 -49.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.449 kcal (2) G-P(sol) polarization free energy of solvation -54.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds