Wall clock time and date at job start Tue Mar 31 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43196 * 119.99972 * 298.76511 * 3 2 1 5 5 N 3.51035 * 140.68577 * 298.77323 * 2 1 3 6 6 C 1.41163 * 119.99835 * 118.77287 * 3 2 1 7 7 C 1.39002 * 119.99673 * 354.75647 * 6 3 2 8 8 H 1.07998 * 120.00209 * 332.18970 * 7 6 3 9 9 C 1.40836 * 119.99442 * 152.19433 * 7 6 3 10 10 N 1.30329 * 120.00182 * 2.91283 * 9 7 6 11 11 Si 1.86808 * 119.99499 * 182.90906 * 9 7 6 12 12 H 1.48498 * 109.47199 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46680 * 120.00353 * 11 9 7 14 14 H 1.48498 * 109.46814 * 239.99588 * 11 9 7 15 15 N 1.38295 * 119.99955 * 174.76439 * 6 3 2 16 16 C 1.39733 * 119.99869 * 120.41985 * 15 6 3 17 17 C 1.38942 * 120.08167 * 354.10860 * 16 15 6 18 18 C 1.38075 * 119.92849 * 180.29669 * 17 16 15 19 19 C 1.38310 * 120.07109 * 359.72297 * 18 17 16 20 20 C 1.38269 * 120.15549 * 359.97438 * 19 18 17 21 21 C 1.38121 * 120.07414 * 0.02562 * 20 19 18 22 22 C 1.50700 * 120.03793 * 180.02562 * 21 20 19 23 23 C 1.53007 * 109.46809 * 264.99416 * 22 21 20 24 24 N 1.46899 * 109.46969 * 180.02562 * 23 22 21 25 25 H 0.97001 * 120.00226 * 185.00481 * 10 9 7 26 26 H 0.96998 * 120.00019 * 300.41957 * 15 6 3 27 27 H 1.08002 * 120.03731 * 0.02562 * 17 16 15 28 28 H 1.08000 * 119.96290 * 179.74440 * 18 17 16 29 29 H 1.08001 * 119.92145 * 180.02562 * 19 18 17 30 30 H 1.08002 * 119.96454 * 179.97438 * 20 19 18 31 31 H 1.08997 * 109.47381 * 24.99383 * 22 21 20 32 32 H 1.09000 * 109.46989 * 145.00071 * 22 21 20 33 33 H 1.08997 * 109.47121 * 300.00126 * 23 22 21 34 34 H 1.08997 * 109.47018 * 60.00050 * 23 22 21 35 35 H 1.00892 * 111.00382 * 56.04454 * 24 23 22 36 36 H 1.00897 * 110.99819 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2843 -0.5958 1.0871 5 7 3.8519 -1.0705 1.9495 6 6 3.2736 0.5894 -1.0716 7 6 2.5826 1.0709 -2.1775 8 1 1.6341 0.6345 -2.4536 9 6 3.1196 2.1277 -2.9378 10 7 4.2903 2.6164 -2.6390 11 14 2.1538 2.8290 -4.3749 12 1 0.8634 2.1056 -4.5042 13 1 1.8907 4.2712 -4.1376 14 1 2.9395 2.6684 -5.6247 15 7 4.6522 0.6870 -1.0212 16 6 5.4325 0.0727 -2.0042 17 6 4.8351 -0.7373 -2.9621 18 6 5.6099 -1.3477 -3.9283 19 6 6.9786 -1.1490 -3.9467 20 6 7.5756 -0.3385 -2.9988 21 6 6.8064 0.2752 -2.0295 22 6 7.4579 1.1588 -0.9971 23 6 7.7438 0.3429 0.2653 24 7 8.3782 1.2043 1.2719 25 1 4.6287 3.3906 -3.1153 26 1 5.0774 1.1820 -0.3035 27 1 3.7665 -0.8929 -2.9483 28 1 5.1467 -1.9808 -4.6706 29 1 7.5822 -1.6273 -4.7038 30 1 8.6446 -0.1857 -3.0159 31 1 8.3932 1.5531 -1.3944 32 1 6.7901 1.9848 -0.7523 33 1 6.8085 -0.0515 0.6626 34 1 8.4115 -0.4831 0.0205 35 1 7.8068 2.0123 1.4684 36 1 8.5776 0.6882 2.1156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:47 Heat of formation + Delta-G solvation = 73.589691 kcal Electronic energy + Delta-G solvation = -21509.514097 eV Core-core repulsion = 18378.806552 eV Total energy + Delta-G solvation = -3130.707545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.46006 -36.94934 -35.24669 -35.19527 -34.74287 -33.49151 -31.63532 -30.67998 -28.28867 -27.13952 -26.79603 -22.61454 -22.39213 -20.82372 -20.34929 -18.84591 -17.31941 -17.04985 -16.22566 -15.69628 -15.60588 -14.96426 -14.20981 -14.19052 -13.62439 -13.44831 -13.36233 -12.81014 -12.64538 -12.46128 -12.28994 -12.26404 -11.86008 -11.72712 -11.63142 -11.56732 -11.41629 -11.13800 -10.99984 -10.92513 -10.66767 -10.56141 -10.35878 -9.99584 -9.79466 -8.59383 -8.17317 -8.08378 -7.65749 -6.56736 -5.47476 1.93274 2.01783 2.44923 2.71868 2.78932 2.88803 3.41592 3.81251 3.98287 4.01686 4.22694 4.44366 4.49662 4.74911 5.12447 5.29438 5.43819 5.52869 5.54737 5.59414 5.71982 5.87581 5.99758 6.08501 6.24033 6.28576 6.29326 6.41620 6.51135 6.66328 6.98835 7.04861 7.11390 7.20734 7.22441 7.29556 7.50699 7.57454 7.70680 7.83592 8.38850 8.54328 8.92326 9.09625 9.25430 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.008412 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.736974 B = 3327.686949 C = 4535.911305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.325 3.675 3 C -0.310 4.310 4 C 0.310 3.690 5 N -0.535 5.535 6 C 0.385 3.615 7 C -0.384 4.384 8 H 0.108 0.892 9 C 0.073 3.927 10 N -0.720 5.720 11 Si 0.925 3.075 12 H -0.249 1.249 13 H -0.264 1.264 14 H -0.263 1.263 15 N -0.658 5.658 16 C 0.265 3.735 17 C -0.177 4.177 18 C -0.086 4.086 19 C -0.191 4.191 20 C -0.079 4.079 21 C -0.156 4.156 22 C -0.065 4.065 23 C 0.062 3.938 24 N -0.853 5.853 25 H 0.299 0.701 26 H 0.396 0.604 27 H 0.131 0.869 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.338 0.662 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.780 1.875 -5.718 9.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.215 5.215 2 C 0.017 3.983 3 C -0.329 4.329 4 C 0.003 3.997 5 N -0.217 5.217 6 C 0.280 3.720 7 C -0.412 4.412 8 H 0.126 0.874 9 C -0.158 4.158 10 N -0.339 5.339 11 Si 0.747 3.253 12 H -0.172 1.172 13 H -0.189 1.189 14 H -0.187 1.187 15 N -0.278 5.278 16 C 0.162 3.838 17 C -0.199 4.199 18 C -0.105 4.105 19 C -0.211 4.211 20 C -0.098 4.098 21 C -0.161 4.161 22 C -0.103 4.103 23 C -0.069 4.069 24 N -0.381 5.381 25 H 0.111 0.889 26 H 0.234 0.766 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.589 1.325 -5.019 9.195 hybrid contribution -0.760 0.671 -0.169 1.028 sum 6.829 1.995 -5.188 8.805 Atomic orbital electron populations 1.81059 1.12243 1.16693 1.11464 1.24707 0.91338 0.90662 0.91594 1.13093 0.83077 1.35652 1.01046 1.25240 0.92380 0.90616 0.91461 1.81069 1.09985 1.17475 1.13195 1.16794 0.80848 0.84378 0.89993 1.20301 1.04397 1.10146 1.06402 0.87397 1.26435 0.94526 0.96603 0.98251 1.69514 1.14082 1.16332 1.33934 0.85897 0.80779 0.79655 0.79018 1.17232 1.18854 1.18713 1.41648 1.03483 1.55213 1.27413 1.17312 0.89034 0.89572 0.87915 1.20902 1.00762 1.01268 0.96992 1.20794 0.93647 0.98454 0.97613 1.20686 0.94892 1.04101 1.01391 1.20603 0.98369 0.96495 0.94344 1.19107 0.91933 1.04529 1.00501 1.20288 1.00236 0.96813 0.92949 1.21847 0.97298 0.95527 0.92200 1.58799 1.52402 1.11939 1.14987 0.88908 0.76643 0.85140 0.87117 0.87561 0.87208 0.91087 0.91161 0.95110 0.91306 0.84972 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.52 18.54 41.84 0.78 -11.75 16 2 C 0.33 7.33 14.05 -22.47 -0.32 7.02 16 3 C -0.31 -6.64 5.88 -104.94 -0.62 -7.25 16 4 C 0.31 6.86 14.82 -22.46 -0.33 6.53 16 5 N -0.53 -12.25 18.54 41.85 0.78 -11.47 16 6 C 0.39 7.75 4.99 -83.55 -0.42 7.33 16 7 C -0.38 -7.62 6.52 -38.32 -0.25 -7.87 16 8 H 0.11 2.18 7.29 -52.49 -0.38 1.80 16 9 C 0.07 1.34 5.21 -17.21 -0.09 1.25 16 10 N -0.72 -13.26 10.92 55.59 0.61 -12.65 16 11 Si 0.92 14.80 29.57 -169.99 -5.03 9.77 16 12 H -0.25 -4.13 7.11 56.52 0.40 -3.72 16 13 H -0.26 -4.23 7.11 56.52 0.40 -3.83 16 14 H -0.26 -4.20 7.11 56.52 0.40 -3.80 16 15 N -0.66 -12.22 3.17 -8.18 -0.03 -12.24 16 16 C 0.26 4.78 5.21 -83.75 -0.44 4.34 16 17 C -0.18 -3.20 8.76 -39.38 -0.35 -3.54 16 18 C -0.09 -1.38 10.04 -39.61 -0.40 -1.77 16 19 C -0.19 -2.87 10.04 -39.54 -0.40 -3.26 16 20 C -0.08 -1.21 9.68 -39.61 -0.38 -1.59 16 21 C -0.16 -2.55 5.15 -104.42 -0.54 -3.09 16 22 C -0.06 -0.96 5.00 -27.88 -0.14 -1.10 16 23 C 0.06 0.89 6.72 -3.82 -0.03 0.86 16 24 N -0.85 -10.74 9.62 -10.37 -0.10 -10.84 16 25 H 0.30 5.07 8.29 -40.82 -0.34 4.74 16 26 H 0.40 7.22 6.75 -40.82 -0.28 6.95 16 27 H 0.13 2.44 6.14 -52.49 -0.32 2.12 16 28 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.07 1.00 8.05 -51.93 -0.42 0.59 16 32 H 0.07 1.08 6.93 -51.93 -0.36 0.72 16 33 H 0.03 0.51 7.90 -51.93 -0.41 0.09 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.34 4.02 8.99 -39.30 -0.35 3.67 16 36 H 0.34 3.84 9.08 -39.29 -0.36 3.48 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -23.53 325.51 -6.48 -30.00 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -3.70 Total: 16.43 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -4.69 Total: -2.15 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 2.03 Total: -58.96 kcal Atomic # 14 Polarization: 14.80 SS G_CDS: -5.03 Total: 9.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -23.53 -6.48 -30.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.595 kcal (2) G-P(sol) polarization free energy of solvation -23.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds