Wall clock time and date at job start Tue Mar 31 2020 05:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43196 * 119.99972 * 298.76511 * 3 2 1 5 5 N 3.51035 * 140.68577 * 298.77323 * 2 1 3 6 6 C 1.41163 * 119.99835 * 118.77287 * 3 2 1 7 7 C 1.39002 * 119.99673 * 354.75647 * 6 3 2 8 8 H 1.07998 * 120.00209 * 332.18970 * 7 6 3 9 9 C 1.40836 * 119.99442 * 152.19433 * 7 6 3 10 10 N 1.30329 * 120.00182 * 2.91283 * 9 7 6 11 11 Si 1.86808 * 119.99499 * 182.90906 * 9 7 6 12 12 H 1.48498 * 109.47199 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46680 * 120.00353 * 11 9 7 14 14 H 1.48498 * 109.46814 * 239.99588 * 11 9 7 15 15 N 1.38295 * 119.99955 * 174.76439 * 6 3 2 16 16 C 1.39733 * 119.99869 * 120.41985 * 15 6 3 17 17 C 1.38942 * 120.08167 * 354.10860 * 16 15 6 18 18 C 1.38075 * 119.92849 * 180.29669 * 17 16 15 19 19 C 1.38310 * 120.07109 * 359.72297 * 18 17 16 20 20 C 1.38269 * 120.15549 * 359.97438 * 19 18 17 21 21 C 1.38121 * 120.07414 * 0.02562 * 20 19 18 22 22 C 1.50700 * 120.03793 * 180.02562 * 21 20 19 23 23 C 1.53007 * 109.46809 * 264.99416 * 22 21 20 24 24 N 1.46899 * 109.46969 * 180.02562 * 23 22 21 25 25 H 0.97001 * 120.00226 * 185.00481 * 10 9 7 26 26 H 0.96998 * 120.00019 * 300.41957 * 15 6 3 27 27 H 1.08002 * 120.03731 * 0.02562 * 17 16 15 28 28 H 1.08000 * 119.96290 * 179.74440 * 18 17 16 29 29 H 1.08001 * 119.92145 * 180.02562 * 19 18 17 30 30 H 1.08002 * 119.96454 * 179.97438 * 20 19 18 31 31 H 1.08997 * 109.47381 * 24.99383 * 22 21 20 32 32 H 1.09000 * 109.46989 * 145.00071 * 22 21 20 33 33 H 1.08997 * 109.47121 * 300.00126 * 23 22 21 34 34 H 1.08997 * 109.47018 * 60.00050 * 23 22 21 35 35 H 1.00892 * 111.00382 * 56.04454 * 24 23 22 36 36 H 1.00897 * 110.99819 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2843 -0.5958 1.0871 5 7 3.8519 -1.0705 1.9495 6 6 3.2736 0.5894 -1.0716 7 6 2.5826 1.0709 -2.1775 8 1 1.6341 0.6345 -2.4536 9 6 3.1196 2.1277 -2.9378 10 7 4.2903 2.6164 -2.6390 11 14 2.1538 2.8290 -4.3749 12 1 0.8634 2.1056 -4.5042 13 1 1.8907 4.2712 -4.1376 14 1 2.9395 2.6684 -5.6247 15 7 4.6522 0.6870 -1.0212 16 6 5.4325 0.0727 -2.0042 17 6 4.8351 -0.7373 -2.9621 18 6 5.6099 -1.3477 -3.9283 19 6 6.9786 -1.1490 -3.9467 20 6 7.5756 -0.3385 -2.9988 21 6 6.8064 0.2752 -2.0295 22 6 7.4579 1.1588 -0.9971 23 6 7.7438 0.3429 0.2653 24 7 8.3782 1.2043 1.2719 25 1 4.6287 3.3906 -3.1153 26 1 5.0774 1.1820 -0.3035 27 1 3.7665 -0.8929 -2.9483 28 1 5.1467 -1.9808 -4.6706 29 1 7.5822 -1.6273 -4.7038 30 1 8.6446 -0.1857 -3.0159 31 1 8.3932 1.5531 -1.3944 32 1 6.7901 1.9848 -0.7523 33 1 6.8085 -0.0515 0.6626 34 1 8.4115 -0.4831 0.0205 35 1 7.8068 2.0123 1.4684 36 1 8.5776 0.6882 2.1156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:46 Heat of formation + Delta-G solvation = 62.045221 kcal Electronic energy + Delta-G solvation = -21510.014703 eV Core-core repulsion = 18378.806552 eV Total energy + Delta-G solvation = -3131.208151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78848 -38.44829 -36.88608 -36.53967 -36.35815 -34.94592 -32.91577 -32.09897 -29.61498 -28.74660 -28.01499 -24.00025 -23.61783 -22.26481 -21.59003 -20.45857 -18.89377 -18.41705 -17.67536 -17.05099 -16.75466 -16.22037 -15.51745 -15.37091 -14.96637 -14.82823 -14.61737 -14.45339 -14.34621 -13.86020 -13.77316 -13.46836 -13.43634 -13.40959 -13.27516 -13.00644 -12.74510 -12.69039 -12.58296 -12.23395 -12.03782 -11.76557 -11.63047 -11.38382 -11.18671 -9.67856 -9.65521 -9.41093 -9.09599 -7.96664 -7.11195 0.48869 0.74799 1.13784 1.39157 1.51227 1.56862 2.04251 2.09810 2.21750 2.36281 2.63075 2.92115 3.20107 3.41500 3.66494 3.85362 4.09245 4.25623 4.37305 4.42149 4.51998 4.57832 4.69458 4.76598 4.80932 4.88966 5.03780 5.16350 5.26580 5.41786 5.47103 5.68587 5.75415 5.91410 5.94864 6.10661 6.16895 6.24049 6.37741 6.54751 6.93029 7.06225 7.20957 7.34263 7.80838 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.008412 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.736974 B = 3327.686949 C = 4535.911305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C 0.330 3.670 3 C -0.326 4.326 4 C 0.316 3.684 5 N -0.556 5.556 6 C 0.381 3.619 7 C -0.381 4.381 8 H 0.100 0.900 9 C 0.049 3.951 10 N -0.720 5.720 11 Si 0.978 3.022 12 H -0.260 1.260 13 H -0.259 1.259 14 H -0.257 1.257 15 N -0.656 5.656 16 C 0.245 3.755 17 C -0.200 4.200 18 C -0.091 4.091 19 C -0.186 4.186 20 C -0.082 4.082 21 C -0.162 4.162 22 C -0.055 4.055 23 C 0.072 3.928 24 N -0.849 5.849 25 H 0.309 0.691 26 H 0.395 0.605 27 H 0.114 0.886 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.005 0.995 34 H 0.070 0.930 35 H 0.343 0.657 36 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 2.522 -7.409 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.241 5.241 2 C 0.023 3.977 3 C -0.345 4.345 4 C 0.010 3.990 5 N -0.239 5.239 6 C 0.275 3.725 7 C -0.409 4.409 8 H 0.118 0.882 9 C -0.182 4.182 10 N -0.338 5.338 11 Si 0.798 3.202 12 H -0.183 1.183 13 H -0.183 1.183 14 H -0.181 1.181 15 N -0.276 5.276 16 C 0.143 3.857 17 C -0.222 4.222 18 C -0.110 4.110 19 C -0.206 4.206 20 C -0.101 4.101 21 C -0.167 4.167 22 C -0.093 4.093 23 C -0.059 4.059 24 N -0.378 5.378 25 H 0.121 0.879 26 H 0.232 0.768 27 H 0.132 0.868 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.023 0.977 34 H 0.088 0.912 35 H 0.155 0.845 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.293 1.967 -6.701 11.625 hybrid contribution -1.163 0.496 0.244 1.288 sum 8.130 2.463 -6.457 10.670 Atomic orbital electron populations 1.81039 1.12773 1.17967 1.12319 1.24896 0.91550 0.90178 0.91059 1.13171 0.82606 1.37032 1.01695 1.25342 0.92081 0.90274 0.91299 1.81049 1.10513 1.18535 1.13804 1.16780 0.81670 0.84278 0.89751 1.20425 1.03939 1.10025 1.06483 0.88212 1.26919 0.95283 0.96385 0.99564 1.69503 1.14235 1.16205 1.33844 0.85128 0.79229 0.79006 0.76879 1.18344 1.18349 1.18076 1.41532 1.02771 1.55539 1.27794 1.17515 0.89773 0.90273 0.88166 1.20950 1.00392 1.02560 0.98261 1.21080 0.94258 0.98266 0.97398 1.21055 0.94683 1.03270 1.01564 1.20958 0.99612 0.95821 0.93675 1.19352 0.91431 1.04742 1.01133 1.20201 1.00217 0.96194 0.92688 1.21683 0.96132 0.95672 0.92426 1.58792 1.51945 1.11871 1.15208 0.87864 0.76759 0.86754 0.85106 0.84671 0.84728 0.90020 0.92098 0.97685 0.91195 0.84462 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -26.66 18.54 19.01 0.35 -26.31 16 2 C 0.33 15.18 14.05 88.33 1.24 16.42 16 3 C -0.33 -14.25 5.88 -20.07 -0.12 -14.37 16 4 C 0.32 14.28 14.82 88.33 1.31 15.59 16 5 N -0.56 -25.87 18.54 19.01 0.35 -25.52 16 6 C 0.38 15.54 4.99 39.02 0.19 15.74 16 7 C -0.38 -15.14 6.52 23.09 0.15 -14.99 16 8 H 0.10 4.09 7.29 -2.91 -0.02 4.07 16 9 C 0.05 1.76 5.21 85.55 0.45 2.21 16 10 N -0.72 -25.57 10.92 21.98 0.24 -25.33 16 11 Si 0.98 29.08 29.57 68.60 2.03 31.11 16 12 H -0.26 -8.16 7.11 99.48 0.71 -7.45 16 13 H -0.26 -7.52 7.11 99.48 0.71 -6.82 16 14 H -0.26 -7.39 7.11 99.48 0.71 -6.68 16 15 N -0.66 -24.51 3.17 -179.79 -0.57 -25.08 16 16 C 0.24 8.71 5.21 38.21 0.20 8.91 16 17 C -0.20 -7.11 8.76 22.40 0.20 -6.91 16 18 C -0.09 -2.74 10.04 22.25 0.22 -2.52 16 19 C -0.19 -5.02 10.04 22.29 0.22 -4.79 16 20 C -0.08 -2.27 9.68 22.25 0.22 -2.06 16 21 C -0.16 -5.06 5.15 -19.73 -0.10 -5.16 16 22 C -0.06 -1.54 5.00 29.85 0.15 -1.39 16 23 C 0.07 2.00 6.72 86.31 0.58 2.58 16 24 N -0.85 -20.27 9.62 -186.72 -1.80 -22.06 16 25 H 0.31 9.88 8.29 -92.71 -0.77 9.12 16 26 H 0.40 14.58 6.75 -92.71 -0.63 13.96 16 27 H 0.11 4.36 6.14 -2.91 -0.02 4.34 16 28 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 32 H 0.06 1.82 6.93 -2.39 -0.02 1.80 16 33 H 0.00 0.16 7.90 -2.39 -0.02 0.14 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.34 7.77 8.99 -89.70 -0.81 6.97 16 36 H 0.35 7.43 9.08 -89.70 -0.81 6.62 16 Total: -1.00 -49.22 325.51 4.44 -44.79 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -1.08 Total: 39.16 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 4.91 Total: 9.24 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -1.42 Total: -124.30 kcal Atomic # 14 Polarization: 29.08 SS G_CDS: 2.03 Total: 31.11 kcal Total: -49.22 4.44 -44.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.833 kcal (2) G-P(sol) polarization free energy of solvation -49.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds