Wall clock time and date at job start Tue Mar 31 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48510 * 109.47102 * 239.99940 * 3 2 1 5 5 H 1.48494 * 109.47332 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47268 * 119.99981 * 3 2 1 7 7 C 1.39955 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99774 * 163.99572 * 7 2 1 9 9 C 1.41013 * 120.00214 * 343.99820 * 7 2 1 10 10 C 1.41009 * 120.70307 * 334.87333 * 9 7 2 11 11 C 1.38010 * 118.27992 * 179.97438 * 10 9 7 12 12 C 1.38680 * 119.62453 * 0.02562 * 11 10 9 13 13 N 1.31970 * 121.45313 * 359.97438 * 12 11 10 14 14 C 1.32270 * 121.86405 * 0.02562 * 13 12 11 15 15 N 1.38085 * 119.90776 * 179.97438 * 14 13 12 16 16 C 1.46500 * 119.99836 * 0.02562 * 15 14 13 17 17 H 1.08998 * 109.47594 * 325.00541 * 16 15 14 18 18 C 1.52996 * 109.47275 * 204.99902 * 16 15 14 19 19 C 1.53002 * 109.47485 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.46828 * 60.00028 * 19 18 16 21 21 C 1.52996 * 109.47065 * 300.00229 * 20 19 18 22 22 F 1.39904 * 109.46954 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.47468 * 299.99797 * 21 20 19 24 24 C 1.53002 * 109.47485 * 60.00173 * 21 20 19 25 25 H 0.97001 * 119.99751 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.86038 * 359.95495 * 10 9 7 27 27 H 1.08002 * 120.18622 * 180.02562 * 11 10 9 28 28 H 1.08007 * 119.27509 * 179.72056 * 12 11 10 29 29 H 0.96994 * 120.00231 * 180.02562 * 15 14 13 30 30 H 1.08997 * 109.47624 * 300.00340 * 18 16 15 31 31 H 1.09007 * 109.47042 * 60.00380 * 18 16 15 32 32 H 1.08995 * 109.47609 * 180.02562 * 19 18 16 33 33 H 1.08997 * 109.46836 * 300.00661 * 19 18 16 34 34 H 1.08998 * 109.46665 * 60.00171 * 20 19 18 35 35 H 1.08997 * 109.47033 * 180.02562 * 20 19 18 36 36 H 1.08992 * 109.47577 * 180.02562 * 24 21 20 37 37 H 1.08997 * 109.46836 * 59.99339 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2126 5 1 1.2778 2.7464 -0.0006 6 1 3.0964 1.6964 1.2124 7 6 2.0084 -1.2121 0.0005 8 1 3.0570 -1.2303 -0.2573 9 6 1.3444 -2.4095 0.3377 10 6 0.1960 -2.3901 1.1558 11 6 -0.4147 -3.5913 1.4539 12 6 0.1101 -4.7712 0.9485 13 7 1.1857 -4.7746 0.1839 14 6 1.8169 -3.6578 -0.1383 15 7 2.9394 -3.7083 -0.9409 16 6 3.4294 -4.9976 -1.4347 17 1 3.2630 -5.7638 -0.6774 18 6 4.9261 -4.8935 -1.7345 19 6 5.4377 -6.2398 -2.2508 20 6 4.6861 -6.6145 -3.5298 21 6 3.1895 -6.7186 -3.2299 22 9 2.5023 -7.0618 -4.3993 23 9 2.9758 -7.7023 -2.2584 24 6 2.6778 -5.3723 -2.7137 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1953 -1.4594 1.5393 27 1 -1.2964 -3.6122 2.0774 28 1 -0.3697 -5.7085 1.1891 29 1 3.4035 -2.8902 -1.1777 30 1 5.0925 -4.1274 -2.4918 31 1 5.4615 -4.6262 -0.8234 32 1 6.5040 -6.1658 -2.4641 33 1 5.2712 -7.0062 -1.4939 34 1 4.8526 -5.8480 -4.2867 35 1 5.0503 -7.5738 -3.8974 36 1 1.6117 -5.4465 -2.4996 37 1 2.8444 -4.6059 -3.4706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169212190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:46 Heat of formation + Delta-G solvation = -87.329786 kcal Electronic energy + Delta-G solvation = -22490.806454 eV Core-core repulsion = 18902.431730 eV Total energy + Delta-G solvation = -3588.374723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.73456 -46.72290 -38.80375 -37.50826 -33.97968 -33.93145 -30.48680 -30.22935 -29.79490 -27.57257 -25.35906 -22.86817 -22.54746 -21.36357 -20.48180 -19.82254 -17.27172 -17.21313 -16.63614 -16.44631 -16.03034 -15.31416 -14.85306 -14.74282 -14.05122 -13.84605 -13.55202 -13.20196 -13.07234 -12.95346 -12.94150 -12.58830 -12.47720 -12.07361 -11.96799 -11.69443 -11.45409 -11.37407 -11.06841 -10.95620 -10.79362 -10.62589 -10.56888 -10.12376 -9.78686 -9.32680 -9.06809 -8.09652 -7.90477 -6.83332 -6.56158 -4.26948 2.73078 3.03455 3.04541 3.08990 3.22423 3.87885 3.89371 4.07164 4.45207 4.46710 4.67133 4.71704 5.01149 5.08636 5.26105 5.35373 5.46040 5.60023 5.73054 5.74652 5.82457 5.96924 6.06852 6.07924 6.16475 6.42002 6.43598 6.54413 6.75911 6.87168 7.09637 7.16281 7.63395 7.79305 7.97555 8.24403 8.48070 8.62865 8.76261 8.96739 9.76240 10.18212 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.005246 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.586897 B = 5336.391544 C = 6128.137547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.074 0.926 9 C 0.033 3.967 10 C -0.125 4.125 11 C -0.190 4.190 12 C 0.003 3.997 13 N -0.528 5.528 14 C 0.300 3.700 15 N -0.723 5.723 16 C 0.173 3.827 17 H 0.089 0.911 18 C -0.134 4.134 19 C -0.113 4.113 20 C -0.157 4.157 21 C 0.291 3.709 22 F -0.208 7.208 23 F -0.198 7.198 24 C -0.169 4.169 25 H 0.280 0.720 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.403 0.597 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.654 -6.194 -4.871 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.092 0.908 9 C 0.026 3.974 10 C -0.151 4.151 11 C -0.212 4.212 12 C -0.151 4.151 13 N -0.245 5.245 14 C 0.063 3.937 15 N -0.361 5.361 16 C 0.065 3.935 17 H 0.107 0.893 18 C -0.172 4.172 19 C -0.151 4.151 20 C -0.195 4.195 21 C 0.254 3.746 22 F -0.189 7.189 23 F -0.179 7.179 24 C -0.209 4.209 25 H 0.091 0.909 26 H 0.143 0.857 27 H 0.112 0.888 28 H 0.135 0.865 29 H 0.240 0.760 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.689 -7.024 -5.175 12.313 hybrid contribution -0.171 1.792 0.074 1.801 sum 8.518 -5.233 -5.101 11.223 Atomic orbital electron populations 1.69801 1.07461 1.29165 1.36024 1.25812 0.94720 1.01025 0.92601 0.86383 0.80078 0.80520 0.79809 1.19149 1.20412 1.18950 1.19097 0.96849 0.90907 1.42032 0.90772 1.17915 0.94571 0.91293 0.93605 1.21364 0.98002 0.96734 0.99008 1.21426 1.01250 0.94397 1.04173 1.21379 0.95488 0.96170 1.02065 1.66558 1.10627 1.29648 1.17705 1.18455 0.90585 0.89728 0.94947 1.43693 1.30092 1.06427 1.55894 1.20381 0.90464 0.88878 0.93743 0.89292 1.21925 0.96056 0.97231 1.01970 1.21430 0.99584 0.97948 0.96139 1.22525 0.92073 1.04302 1.00585 1.21147 0.92280 0.86965 0.74203 1.92980 1.82212 1.93619 1.50123 1.92994 1.95988 1.65200 1.63706 1.23043 1.03980 0.93300 1.00565 0.90884 0.85732 0.88753 0.86488 0.76029 0.91361 0.90597 0.90517 0.90725 0.88957 0.89881 0.88902 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.15 10.93 55.55 0.61 -19.55 16 2 C 0.08 1.82 5.20 -17.32 -0.09 1.73 16 3 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.36 8.52 -37.89 -0.32 -11.68 16 8 H 0.07 1.71 6.69 -52.49 -0.35 1.36 16 9 C 0.03 0.85 5.60 -106.47 -0.60 0.26 16 10 C -0.12 -3.20 8.79 -38.62 -0.34 -3.54 16 11 C -0.19 -4.47 10.08 -39.50 -0.40 -4.87 16 12 C 0.00 0.06 11.17 -17.33 -0.19 -0.13 16 13 N -0.53 -12.67 9.17 -11.87 -0.11 -12.78 16 14 C 0.30 7.17 7.49 -155.03 -1.16 6.00 16 15 N -0.72 -14.26 5.12 -53.49 -0.27 -14.53 16 16 C 0.17 2.85 2.34 -67.93 -0.16 2.69 16 17 H 0.09 1.67 7.19 -51.93 -0.37 1.30 16 18 C -0.13 -1.64 5.39 -26.73 -0.14 -1.79 16 19 C -0.11 -1.17 5.80 -26.73 -0.16 -1.32 16 20 C -0.16 -1.69 5.45 -26.73 -0.15 -1.84 16 21 C 0.29 4.22 2.10 -26.73 -0.06 4.16 16 22 F -0.21 -3.24 17.06 2.25 0.04 -3.21 16 23 F -0.20 -3.24 16.03 2.25 0.04 -3.20 16 24 C -0.17 -2.73 5.04 -26.73 -0.13 -2.86 16 25 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 26 H 0.12 3.28 6.25 -52.49 -0.33 2.96 16 27 H 0.09 1.97 8.06 -52.49 -0.42 1.54 16 28 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 29 H 0.40 7.57 6.80 -40.82 -0.28 7.29 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.82 7.80 -51.93 -0.41 0.42 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -27.79 308.32 -8.65 -36.44 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.67 Total: 12.40 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -3.90 Total: -13.19 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.22 Total: -46.85 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.07 Total: -6.41 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.79 -8.65 -36.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169212190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.889 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds