Wall clock time and date at job start Tue Mar 31 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48510 * 109.47102 * 239.99940 * 3 2 1 5 5 H 1.48494 * 109.47332 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47268 * 119.99981 * 3 2 1 7 7 C 1.39955 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99774 * 163.99572 * 7 2 1 9 9 C 1.41013 * 120.00214 * 343.99820 * 7 2 1 10 10 C 1.41009 * 120.70307 * 334.87333 * 9 7 2 11 11 C 1.38010 * 118.27992 * 179.97438 * 10 9 7 12 12 C 1.38680 * 119.62453 * 0.02562 * 11 10 9 13 13 N 1.31970 * 121.45313 * 359.97438 * 12 11 10 14 14 C 1.32270 * 121.86405 * 0.02562 * 13 12 11 15 15 N 1.38085 * 119.90776 * 179.97438 * 14 13 12 16 16 C 1.46500 * 119.99836 * 0.02562 * 15 14 13 17 17 H 1.08998 * 109.47594 * 325.00541 * 16 15 14 18 18 C 1.52996 * 109.47275 * 204.99902 * 16 15 14 19 19 C 1.53002 * 109.47485 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.46828 * 60.00028 * 19 18 16 21 21 C 1.52996 * 109.47065 * 300.00229 * 20 19 18 22 22 F 1.39904 * 109.46954 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.47468 * 299.99797 * 21 20 19 24 24 C 1.53002 * 109.47485 * 60.00173 * 21 20 19 25 25 H 0.97001 * 119.99751 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.86038 * 359.95495 * 10 9 7 27 27 H 1.08002 * 120.18622 * 180.02562 * 11 10 9 28 28 H 1.08007 * 119.27509 * 179.72056 * 12 11 10 29 29 H 0.96994 * 120.00231 * 180.02562 * 15 14 13 30 30 H 1.08997 * 109.47624 * 300.00340 * 18 16 15 31 31 H 1.09007 * 109.47042 * 60.00380 * 18 16 15 32 32 H 1.08995 * 109.47609 * 180.02562 * 19 18 16 33 33 H 1.08997 * 109.46836 * 300.00661 * 19 18 16 34 34 H 1.08998 * 109.46665 * 60.00171 * 20 19 18 35 35 H 1.08997 * 109.47033 * 180.02562 * 20 19 18 36 36 H 1.08992 * 109.47577 * 180.02562 * 24 21 20 37 37 H 1.08997 * 109.46836 * 59.99339 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2126 5 1 1.2778 2.7464 -0.0006 6 1 3.0964 1.6964 1.2124 7 6 2.0084 -1.2121 0.0005 8 1 3.0570 -1.2303 -0.2573 9 6 1.3444 -2.4095 0.3377 10 6 0.1960 -2.3901 1.1558 11 6 -0.4147 -3.5913 1.4539 12 6 0.1101 -4.7712 0.9485 13 7 1.1857 -4.7746 0.1839 14 6 1.8169 -3.6578 -0.1383 15 7 2.9394 -3.7083 -0.9409 16 6 3.4294 -4.9976 -1.4347 17 1 3.2630 -5.7638 -0.6774 18 6 4.9261 -4.8935 -1.7345 19 6 5.4377 -6.2398 -2.2508 20 6 4.6861 -6.6145 -3.5298 21 6 3.1895 -6.7186 -3.2299 22 9 2.5023 -7.0618 -4.3993 23 9 2.9758 -7.7023 -2.2584 24 6 2.6778 -5.3723 -2.7137 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1953 -1.4594 1.5393 27 1 -1.2964 -3.6122 2.0774 28 1 -0.3697 -5.7085 1.1891 29 1 3.4035 -2.8902 -1.1777 30 1 5.0925 -4.1274 -2.4918 31 1 5.4615 -4.6262 -0.8234 32 1 6.5040 -6.1658 -2.4641 33 1 5.2712 -7.0062 -1.4939 34 1 4.8526 -5.8480 -4.2867 35 1 5.0503 -7.5738 -3.8974 36 1 1.6117 -5.4465 -2.4996 37 1 2.8444 -4.6059 -3.4706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169212190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:45 Heat of formation + Delta-G solvation = -101.510422 kcal Electronic energy + Delta-G solvation = -22491.421372 eV Core-core repulsion = 18902.431730 eV Total energy + Delta-G solvation = -3588.989642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.94488 -47.95034 -40.49037 -38.84017 -35.82721 -35.36034 -32.31441 -31.67428 -31.00276 -29.10337 -27.20286 -24.19835 -23.79063 -23.03470 -22.13149 -21.00751 -19.14047 -18.47856 -18.22319 -17.69676 -17.23780 -16.99282 -16.44664 -15.86634 -15.67431 -15.22002 -15.01776 -14.64346 -14.62041 -14.28960 -14.23112 -14.02058 -13.72824 -13.48865 -13.24010 -13.18522 -13.14580 -12.95528 -12.65850 -12.22055 -12.06617 -11.84105 -11.71226 -11.64800 -11.21722 -11.12053 -10.75271 -9.99014 -9.78998 -8.64699 -8.34203 -6.15740 0.92876 1.21793 1.41975 1.52013 1.56666 2.22772 2.57090 2.84415 2.91167 3.29751 3.40658 3.51146 3.82000 3.92872 4.08592 4.22525 4.27341 4.33989 4.36669 4.58914 4.62305 4.82015 4.85613 4.90261 4.95513 4.97173 5.09409 5.13359 5.23566 5.28720 5.31508 5.42241 5.79328 5.91771 6.09748 6.39957 6.75469 6.85583 6.90963 7.14640 7.93333 8.38773 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.005246 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.586897 B = 5336.391544 C = 6128.137547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.478 4.478 8 H 0.086 0.914 9 C 0.002 3.998 10 C -0.152 4.152 11 C -0.196 4.196 12 C -0.006 4.006 13 N -0.541 5.541 14 C 0.297 3.703 15 N -0.717 5.717 16 C 0.172 3.828 17 H 0.062 0.938 18 C -0.126 4.126 19 C -0.107 4.107 20 C -0.148 4.148 21 C 0.285 3.715 22 F -0.216 7.216 23 F -0.212 7.212 24 C -0.165 4.165 25 H 0.285 0.715 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.143 0.857 29 H 0.407 0.593 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.050 0.950 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.120 -5.975 -5.993 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.509 4.509 8 H 0.104 0.896 9 C -0.005 4.005 10 C -0.179 4.179 11 C -0.219 4.219 12 C -0.159 4.159 13 N -0.259 5.259 14 C 0.058 3.942 15 N -0.354 5.354 16 C 0.066 3.934 17 H 0.080 0.920 18 C -0.164 4.164 19 C -0.145 4.145 20 C -0.186 4.186 21 C 0.249 3.751 22 F -0.197 7.197 23 F -0.193 7.193 24 C -0.205 4.205 25 H 0.096 0.904 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.161 0.839 29 H 0.245 0.755 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.171 -6.834 -6.313 14.538 hybrid contribution -1.009 1.650 0.418 1.978 sum 10.162 -5.184 -5.895 12.841 Atomic orbital electron populations 1.69886 1.09112 1.30339 1.36606 1.26708 0.95397 1.04391 0.91602 0.85244 0.78619 0.75720 0.80096 1.17905 1.20091 1.18664 1.19406 0.97498 0.91330 1.42663 0.89555 1.18305 0.95249 0.92603 0.94359 1.21387 0.99185 0.96940 1.00362 1.21637 1.01935 0.93852 1.04456 1.21866 0.95340 0.97181 1.01474 1.66675 1.11192 1.29708 1.18350 1.18720 0.91385 0.89237 0.94852 1.43804 1.28741 1.08035 1.54853 1.20529 0.93535 0.86473 0.92885 0.91953 1.21900 0.92268 0.99314 1.02915 1.21451 1.01439 0.96102 0.95504 1.22573 0.88377 1.06248 1.01401 1.21467 0.94775 0.85354 0.73541 1.92963 1.82801 1.93569 1.50362 1.92967 1.96270 1.65672 1.64435 1.22939 1.01450 0.95198 1.00891 0.90422 0.87239 0.86486 0.83923 0.75544 0.89467 0.90277 0.86877 0.91666 0.86821 0.87917 0.93065 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.88 10.93 21.83 0.24 -42.65 16 2 C 0.03 1.59 5.20 85.25 0.44 2.04 16 3 Si 0.98 36.46 29.59 68.60 2.03 38.49 16 4 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 5 H -0.28 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.48 -23.98 8.52 23.37 0.20 -23.78 16 8 H 0.09 3.95 6.69 -2.91 -0.02 3.93 16 9 C 0.00 0.10 5.60 -21.06 -0.12 -0.02 16 10 C -0.15 -8.10 8.79 22.90 0.20 -7.89 16 11 C -0.20 -9.43 10.08 22.32 0.22 -9.21 16 12 C -0.01 -0.27 11.17 84.78 0.95 0.68 16 13 N -0.54 -26.51 9.17 -191.45 -1.76 -28.26 16 14 C 0.30 14.48 7.49 134.05 1.00 15.48 16 15 N -0.72 -28.26 5.12 -323.14 -1.66 -29.92 16 16 C 0.17 5.58 2.34 44.99 0.11 5.68 16 17 H 0.06 2.37 7.19 -2.39 -0.02 2.35 16 18 C -0.13 -2.75 5.39 30.59 0.16 -2.59 16 19 C -0.11 -1.82 5.80 30.60 0.18 -1.64 16 20 C -0.15 -2.68 5.45 30.59 0.17 -2.51 16 21 C 0.29 7.93 2.10 30.59 0.06 7.99 16 22 F -0.22 -6.51 17.06 44.97 0.77 -5.74 16 23 F -0.21 -6.88 16.03 44.97 0.72 -6.16 16 24 C -0.16 -5.28 5.04 30.60 0.15 -5.12 16 25 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 26 H 0.11 6.04 6.25 -2.91 -0.02 6.02 16 27 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 28 H 0.14 5.81 8.06 -2.91 -0.02 5.78 16 29 H 0.41 15.05 6.80 -92.71 -0.63 14.41 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.27 7.80 -2.39 -0.02 1.25 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -62.27 308.32 4.54 -57.73 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.46 Total: 37.41 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 3.73 Total: -20.89 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -3.17 Total: -100.83 kcal Atomic # 9 Polarization: -13.39 SS G_CDS: 1.49 Total: -11.91 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -62.27 4.54 -57.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169212190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.780 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds