Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86809 * 119.99813 * 2 1 4 4 H 1.48501 * 109.46979 * 240.00373 * 3 2 1 5 5 H 1.48502 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47193 * 120.00278 * 3 2 1 7 7 C 1.39945 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99934 * 163.98027 * 7 2 1 9 9 C 1.41019 * 120.00132 * 343.97817 * 7 2 1 10 10 C 1.40996 * 120.70471 * 334.84713 * 9 7 2 11 11 C 1.38011 * 118.28422 * 180.02562 * 10 9 7 12 12 C 1.38681 * 119.62425 * 0.02562 * 11 10 9 13 13 N 1.31967 * 121.44637 * 359.74203 * 12 11 10 14 14 C 1.32269 * 121.86626 * 0.53098 * 13 12 11 15 15 N 1.38090 * 119.90760 * 179.75341 * 14 13 12 16 16 C 1.46500 * 119.99908 * 359.72225 * 15 14 13 17 17 H 1.09005 * 109.46869 * 324.99883 * 16 15 14 18 18 C 1.52996 * 109.47153 * 85.00268 * 16 15 14 19 19 C 1.53000 * 109.47183 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.46940 * 299.99671 * 19 18 16 21 21 C 1.53002 * 109.46771 * 60.00445 * 20 19 18 22 22 F 1.39899 * 109.46772 * 180.02562 * 21 20 19 23 23 F 1.39894 * 109.47474 * 60.00152 * 21 20 19 24 24 C 1.53000 * 109.47025 * 299.99503 * 21 20 19 25 25 H 0.97002 * 120.00391 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.86145 * 0.04817 * 10 9 7 27 27 H 1.07997 * 120.18919 * 180.02562 * 11 10 9 28 28 H 1.08003 * 119.27388 * 180.02562 * 12 11 10 29 29 H 0.97000 * 120.00121 * 179.72961 * 15 14 13 30 30 H 1.08996 * 109.47392 * 60.00043 * 18 16 15 31 31 H 1.09003 * 109.47171 * 299.99987 * 18 16 15 32 32 H 1.09003 * 109.47643 * 179.97438 * 19 18 16 33 33 H 1.08997 * 109.47713 * 59.99577 * 19 18 16 34 34 H 1.08996 * 109.47112 * 299.99968 * 20 19 18 35 35 H 1.09006 * 109.46953 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.47174 * 180.02562 * 24 21 20 37 37 H 1.08996 * 109.47192 * 300.00681 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0963 1.6965 -1.2126 5 1 1.2776 2.7465 0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0570 -1.2299 -0.2587 9 6 1.3445 -2.4097 0.3360 10 6 0.1968 -2.3910 1.1548 11 6 -0.4132 -3.5925 1.4532 12 6 0.1117 -4.7722 0.9471 13 7 1.1842 -4.7744 0.1781 14 6 1.8175 -3.6577 -0.1402 15 7 2.9393 -3.7075 -0.9439 16 6 3.4299 -4.9965 -1.4379 17 1 3.2649 -5.7625 -0.6801 18 6 2.6775 -5.3728 -2.7158 19 6 3.1893 -6.7193 -3.2313 20 6 4.6858 -6.6145 -3.5327 21 6 5.4382 -6.2383 -2.2547 22 9 6.8063 -6.1420 -2.5303 23 9 5.2261 -7.2212 -1.2821 24 6 4.9263 -4.8918 -1.7392 25 1 -0.4851 0.8400 0.0004 26 1 -0.1951 -1.4606 1.5383 27 1 -1.2944 -3.6140 2.0772 28 1 -0.3704 -5.7092 1.1838 29 1 3.4026 -2.8890 -1.1814 30 1 2.8424 -4.6068 -3.4735 31 1 1.6114 -5.4478 -2.5011 32 1 2.6530 -6.9877 -4.1415 33 1 3.0241 -7.4852 -2.4735 34 1 4.8510 -5.8488 -4.2905 35 1 5.0503 -7.5738 -3.9004 36 1 5.4626 -4.6235 -0.8289 37 1 5.0916 -4.1260 -2.4970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169212193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = -100.461219 kcal Electronic energy + Delta-G solvation = -22398.701167 eV Core-core repulsion = 18809.757022 eV Total energy + Delta-G solvation = -3588.944145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.97556 -47.97279 -40.48515 -38.83728 -35.81645 -35.35226 -32.28844 -31.88356 -30.82408 -29.11029 -27.19338 -24.20514 -23.74368 -23.09184 -22.13858 -21.00289 -19.13386 -18.51118 -18.40830 -17.60758 -17.16915 -16.86626 -16.47157 -15.79760 -15.57042 -15.41502 -15.07292 -14.78177 -14.62448 -14.29981 -14.22346 -14.03830 -13.65852 -13.52052 -13.25722 -13.19857 -13.13310 -12.73732 -12.65778 -12.31889 -12.19166 -11.80712 -11.68480 -11.57509 -11.43725 -11.11785 -10.64994 -9.96566 -9.78632 -8.63888 -8.31733 -6.14813 0.94479 1.23451 1.41423 1.51044 1.55988 2.22528 2.47854 2.84012 2.91757 3.28107 3.33632 3.47530 3.82452 3.92969 4.09861 4.18751 4.25561 4.34863 4.37272 4.52544 4.64533 4.77851 4.85927 4.87859 4.92107 4.98031 5.08179 5.14455 5.23947 5.31571 5.35136 5.45356 5.80740 5.93181 6.11156 6.40872 6.76653 6.85024 6.91491 7.15201 7.93939 8.39265 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.005191 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.647562 B = 5392.368640 C = 6348.189976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.480 4.480 8 H 0.083 0.917 9 C 0.000 4.000 10 C -0.151 4.151 11 C -0.198 4.198 12 C -0.002 4.002 13 N -0.539 5.539 14 C 0.301 3.699 15 N -0.719 5.719 16 C 0.173 3.827 17 H 0.063 0.937 18 C -0.127 4.127 19 C -0.108 4.108 20 C -0.149 4.149 21 C 0.291 3.709 22 F -0.207 7.207 23 F -0.212 7.212 24 C -0.163 4.163 25 H 0.285 0.715 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.147 0.853 29 H 0.405 0.595 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 -6.812 -7.274 12.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.511 4.511 8 H 0.101 0.899 9 C -0.007 4.007 10 C -0.178 4.178 11 C -0.221 4.221 12 C -0.155 4.155 13 N -0.257 5.257 14 C 0.062 3.938 15 N -0.357 5.357 16 C 0.067 3.933 17 H 0.081 0.919 18 C -0.167 4.167 19 C -0.146 4.146 20 C -0.187 4.187 21 C 0.255 3.745 22 F -0.188 7.188 23 F -0.193 7.193 24 C -0.202 4.202 25 H 0.096 0.904 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.164 0.836 29 H 0.242 0.758 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.031 -7.661 -7.579 13.440 hybrid contribution -0.165 1.857 0.754 2.011 sum 7.866 -5.805 -6.825 11.923 Atomic orbital electron populations 1.69875 1.08974 1.30285 1.36699 1.26648 0.95393 1.04202 0.91680 0.85290 0.78674 0.76006 0.79983 1.18018 1.19916 1.18903 1.19377 0.97382 0.91452 1.42862 0.89891 1.18287 0.95342 0.92582 0.94472 1.21379 0.99110 0.97015 1.00251 1.21645 1.01976 0.93858 1.04581 1.21905 0.95257 0.97216 1.01109 1.66670 1.11157 1.29476 1.18357 1.18646 0.91185 0.89306 0.94655 1.43764 1.28940 1.07836 1.55177 1.20453 0.90521 0.86520 0.95807 0.91911 1.21969 0.99907 0.97886 0.96908 1.21421 0.93866 0.96686 1.02631 1.22555 0.95781 1.05905 0.94413 1.21199 0.77332 0.87214 0.88759 1.92987 1.34908 1.96690 1.94242 1.92978 1.94655 1.65348 1.66308 1.22746 0.96685 0.96289 1.04467 0.90426 0.87332 0.86467 0.83569 0.75830 0.90984 0.93377 0.88364 0.91911 0.86759 0.87869 0.89921 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.60 10.93 21.83 0.24 -42.36 16 2 C 0.03 1.68 5.20 85.25 0.44 2.13 16 3 Si 0.98 36.78 29.59 68.60 2.03 38.81 16 4 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.48 -24.17 8.52 23.37 0.20 -23.97 16 8 H 0.08 3.86 6.69 -2.91 -0.02 3.84 16 9 C 0.00 0.01 5.60 -21.06 -0.12 -0.11 16 10 C -0.15 -7.95 8.79 22.89 0.20 -7.75 16 11 C -0.20 -9.32 10.08 22.32 0.22 -9.09 16 12 C 0.00 -0.08 11.17 84.78 0.95 0.86 16 13 N -0.54 -25.56 9.17 -191.46 -1.76 -27.32 16 14 C 0.30 14.48 7.49 134.05 1.00 15.48 16 15 N -0.72 -28.43 5.13 -323.13 -1.66 -30.09 16 16 C 0.17 5.61 2.34 44.99 0.11 5.71 16 17 H 0.06 2.38 7.19 -2.38 -0.02 2.36 16 18 C -0.13 -3.63 5.51 30.59 0.17 -3.46 16 19 C -0.11 -2.29 5.80 30.60 0.18 -2.11 16 20 C -0.15 -2.70 5.45 30.60 0.17 -2.53 16 21 C 0.29 6.99 2.10 30.59 0.06 7.06 16 22 F -0.21 -5.14 17.06 44.97 0.77 -4.37 16 23 F -0.21 -6.10 16.02 44.97 0.72 -5.38 16 24 C -0.16 -4.20 4.92 30.60 0.15 -4.04 16 25 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 26 H 0.11 5.95 6.25 -2.91 -0.02 5.93 16 27 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 28 H 0.15 5.64 8.06 -2.91 -0.02 5.62 16 29 H 0.40 15.23 6.81 -92.71 -0.63 14.59 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.49 7.80 -2.39 -0.02 1.47 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -59.75 308.33 4.54 -55.21 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.46 Total: 37.33 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 3.73 Total: -21.82 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -3.17 Total: -99.77 kcal Atomic # 9 Polarization: -11.24 SS G_CDS: 1.49 Total: -9.76 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Total: -59.75 4.54 -55.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169212193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.251 kcal (2) G-P(sol) polarization free energy of solvation -59.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds