Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86799 * 120.00035 * 2 1 4 4 H 1.48499 * 109.47148 * 270.00026 * 3 2 1 5 5 H 1.48496 * 109.47322 * 29.99772 * 3 2 1 6 6 H 1.48498 * 109.47127 * 150.00042 * 3 2 1 7 7 C 1.39865 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99846 * 163.29511 * 7 2 1 9 9 C 1.41199 * 120.00328 * 343.29940 * 7 2 1 10 10 C 1.41323 * 120.57077 * 335.71875 * 9 7 2 11 11 C 1.36563 * 118.40904 * 180.02562 * 10 9 7 12 12 C 1.39707 * 119.49258 * 359.97438 * 11 10 9 13 13 N 1.38374 * 119.42522 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00189 * 0.02562 * 13 12 11 15 15 H 1.08998 * 109.47318 * 35.00168 * 14 13 12 16 16 C 1.53000 * 109.46871 * 154.99724 * 14 13 12 17 17 C 1.53003 * 109.47164 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46791 * 299.99817 * 17 16 14 19 19 C 1.53000 * 109.47117 * 60.00154 * 18 17 16 20 20 F 1.39901 * 109.47149 * 59.99812 * 19 18 17 21 21 F 1.39905 * 109.47317 * 180.02562 * 19 18 17 22 22 C 1.52993 * 109.47178 * 274.99462 * 14 13 12 23 23 N 1.32739 * 121.13908 * 0.25720 * 12 11 10 24 24 C 1.31490 * 121.73215 * 359.47078 * 23 12 11 25 25 H 0.97003 * 119.99747 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.79566 * 359.97438 * 10 9 7 27 27 H 1.08000 * 120.25218 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99130 * 179.97438 * 13 12 11 29 29 H 1.09006 * 109.47322 * 59.99793 * 16 14 13 30 30 H 1.09003 * 109.47564 * 299.99880 * 16 14 13 31 31 H 1.09001 * 109.47178 * 180.02562 * 17 16 14 32 32 H 1.08996 * 109.47510 * 59.99704 * 17 16 14 33 33 H 1.08997 * 109.47108 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47505 * 300.00333 * 18 17 16 35 35 H 1.08998 * 109.47573 * 300.00551 * 22 14 13 36 36 H 1.09007 * 109.47153 * 60.00514 * 22 14 13 37 37 H 1.07998 * 119.81325 * 180.26609 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4401 0.7000 7 6 2.0083 -1.2113 0.0005 8 1 3.0541 -1.2312 -0.2683 9 6 1.3470 -2.4082 0.3525 10 6 0.1946 -2.3790 1.1700 11 6 -0.4098 -3.5629 1.4835 12 6 0.1219 -4.7578 0.9923 13 7 -0.4912 -5.9565 1.3113 14 6 -1.6875 -5.9652 2.1568 15 1 -2.2898 -5.0823 1.9433 16 6 -2.5075 -7.2241 1.8673 17 6 -3.7572 -7.2329 2.7499 18 6 -3.3416 -7.2224 4.2224 19 6 -2.5217 -5.9636 4.5119 20 9 -3.2945 -4.8302 4.2374 21 9 -2.1412 -5.9542 5.8582 22 6 -1.2715 -5.9551 3.6291 23 7 1.2082 -4.7634 0.2294 24 6 1.8239 -3.6508 -0.1053 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1983 -1.4430 1.5386 27 1 -1.2919 -3.5752 2.1065 28 1 -0.1293 -6.7911 0.9743 29 1 -1.9052 -8.1072 2.0808 30 1 -2.8039 -7.2314 0.8184 31 1 -4.3412 -8.1300 2.5440 32 1 -4.3594 -6.3499 2.5361 33 1 -4.2319 -7.2282 4.8512 34 1 -2.7395 -8.1054 4.4363 35 1 -0.6691 -6.8380 3.8426 36 1 -0.6873 -5.0582 3.8354 37 1 2.7031 -3.6911 -0.7312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169213130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = -84.844133 kcal Electronic energy + Delta-G solvation = -22161.525072 eV Core-core repulsion = 18573.258135 eV Total energy + Delta-G solvation = -3588.266937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.91651 -46.90788 -38.98633 -37.68096 -34.60035 -33.35438 -30.72416 -30.18873 -29.86397 -28.26316 -24.84088 -22.94615 -22.71403 -21.74267 -20.64338 -19.94609 -17.37831 -17.27063 -16.80293 -16.49469 -16.18341 -15.32893 -15.02762 -14.98598 -14.19722 -13.80194 -13.73374 -13.39595 -13.25601 -13.16718 -12.86059 -12.75824 -12.47136 -12.23552 -12.07758 -11.72045 -11.55676 -11.31407 -11.23570 -11.05891 -10.95437 -10.81831 -10.55331 -10.33225 -9.77218 -9.43846 -8.80616 -8.25143 -8.02228 -6.85838 -6.62568 -4.20109 2.74881 2.98492 3.09354 3.13810 3.28085 3.66118 3.84666 3.96429 4.24325 4.27604 4.49153 4.69611 4.80261 4.88817 5.06066 5.14595 5.24119 5.37365 5.57325 5.64094 5.74590 5.77783 5.83271 5.92049 6.04471 6.14683 6.26699 6.49112 6.63201 6.86151 7.17409 7.32370 7.41123 7.74394 7.91554 8.23614 8.41499 8.64100 8.84365 8.90580 9.70095 10.23412 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.004188 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.872206 B = 6684.548558 C = 7249.253929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.078 0.922 9 C 0.031 3.969 10 C -0.093 4.093 11 C -0.203 4.203 12 C 0.274 3.726 13 N -0.737 5.737 14 C 0.173 3.827 15 H 0.085 0.915 16 C -0.130 4.130 17 C -0.115 4.115 18 C -0.157 4.157 19 C 0.290 3.710 20 F -0.198 7.198 21 F -0.205 7.205 22 C -0.177 4.177 23 N -0.520 5.520 24 C 0.009 3.991 25 H 0.279 0.721 26 H 0.128 0.872 27 H 0.099 0.901 28 H 0.390 0.610 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 -11.128 6.594 14.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.026 3.974 10 C -0.120 4.120 11 C -0.226 4.226 12 C 0.042 3.958 13 N -0.374 5.374 14 C 0.065 3.935 15 H 0.102 0.898 16 C -0.168 4.168 17 C -0.153 4.153 18 C -0.195 4.195 19 C 0.253 3.747 20 F -0.179 7.179 21 F -0.186 7.186 22 C -0.217 4.217 23 N -0.235 5.235 24 C -0.149 4.149 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.117 0.883 28 H 0.224 0.776 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.442 -11.597 6.379 15.184 hybrid contribution 0.122 1.514 0.368 1.563 sum -7.320 -10.083 6.747 14.169 Atomic orbital electron populations 1.69814 1.07504 1.29077 1.36771 1.25856 0.94722 1.01208 0.92453 0.86323 0.80576 0.80739 0.79144 1.19578 1.20216 1.18544 1.19327 0.97599 0.90873 1.40992 0.90410 1.18368 0.93366 0.93597 0.92027 1.21327 0.97077 0.96567 0.97013 1.20872 1.02311 0.92858 1.06596 1.17729 0.93180 0.85173 0.99762 1.43558 1.30496 1.05787 1.57579 1.20452 0.87057 0.98810 0.87214 0.89759 1.21882 0.96235 0.97904 1.00814 1.21456 0.97940 1.03608 0.92301 1.22535 1.01137 0.96454 0.99407 1.21141 0.91060 0.84535 0.77937 1.93005 1.76994 1.54382 1.93523 1.92996 1.92211 1.96946 1.36487 1.23174 0.95691 1.05996 0.96848 1.66507 1.08676 1.32913 1.15433 1.22186 1.01665 0.87302 1.03764 0.90984 0.85457 0.88349 0.77639 0.91175 0.90357 0.90246 0.90557 0.89636 0.88849 0.88977 0.88907 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.85 10.91 55.54 0.61 -20.25 16 2 C 0.07 1.85 5.19 -17.34 -0.09 1.76 16 3 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.05 9.07 -37.85 -0.34 -12.39 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.03 0.84 5.59 -106.65 -0.60 0.24 16 10 C -0.09 -2.41 8.74 -39.01 -0.34 -2.76 16 11 C -0.20 -4.72 8.72 -39.64 -0.35 -5.07 16 12 C 0.27 6.12 7.62 -155.12 -1.18 4.94 16 13 N -0.74 -12.75 5.22 -53.87 -0.28 -13.03 16 14 C 0.17 2.43 2.01 -67.94 -0.14 2.29 16 15 H 0.08 1.35 6.07 -51.93 -0.32 1.04 16 16 C -0.13 -1.33 5.39 -26.73 -0.14 -1.48 16 17 C -0.11 -1.00 5.80 -26.73 -0.16 -1.15 16 18 C -0.16 -1.43 5.45 -26.73 -0.15 -1.57 16 19 C 0.29 3.66 2.10 -26.70 -0.06 3.60 16 20 F -0.20 -2.91 16.02 2.25 0.04 -2.87 16 21 F -0.21 -2.86 17.06 2.25 0.04 -2.82 16 22 C -0.18 -2.40 4.93 -26.71 -0.13 -2.53 16 23 N -0.52 -12.61 10.37 -11.79 -0.12 -12.74 16 24 C 0.01 0.22 10.97 -16.75 -0.18 0.04 16 25 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 26 H 0.13 3.39 6.20 -52.49 -0.33 3.07 16 27 H 0.10 2.09 5.99 -52.49 -0.31 1.78 16 28 H 0.39 6.22 8.72 -40.82 -0.36 5.86 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.72 7.80 -51.93 -0.41 0.32 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.50 7.62 -51.92 -0.40 1.11 16 37 H 0.13 2.96 8.06 -52.49 -0.42 2.54 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -28.64 307.59 -8.59 -37.23 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -4.62 Total: 10.22 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -3.85 Total: -14.07 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.20 Total: -46.01 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.07 Total: -5.69 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.64 -8.59 -37.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169213130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.616 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds