Wall clock time and date at job start Tue Mar 31 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86799 * 120.00035 * 2 1 4 4 H 1.48499 * 109.47148 * 270.00026 * 3 2 1 5 5 H 1.48496 * 109.47322 * 29.99772 * 3 2 1 6 6 H 1.48498 * 109.47127 * 150.00042 * 3 2 1 7 7 C 1.39865 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99846 * 163.29511 * 7 2 1 9 9 C 1.41199 * 120.00328 * 343.29940 * 7 2 1 10 10 C 1.41323 * 120.57077 * 335.71875 * 9 7 2 11 11 C 1.36563 * 118.40904 * 180.02562 * 10 9 7 12 12 C 1.39707 * 119.49258 * 359.97438 * 11 10 9 13 13 N 1.38374 * 119.42522 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00189 * 0.02562 * 13 12 11 15 15 H 1.08998 * 109.47318 * 35.00168 * 14 13 12 16 16 C 1.53000 * 109.46871 * 154.99724 * 14 13 12 17 17 C 1.53003 * 109.47164 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46791 * 299.99817 * 17 16 14 19 19 C 1.53000 * 109.47117 * 60.00154 * 18 17 16 20 20 F 1.39901 * 109.47149 * 59.99812 * 19 18 17 21 21 F 1.39905 * 109.47317 * 180.02562 * 19 18 17 22 22 C 1.52993 * 109.47178 * 274.99462 * 14 13 12 23 23 N 1.32739 * 121.13908 * 0.25720 * 12 11 10 24 24 C 1.31490 * 121.73215 * 359.47078 * 23 12 11 25 25 H 0.97003 * 119.99747 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.79566 * 359.97438 * 10 9 7 27 27 H 1.08000 * 120.25218 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99130 * 179.97438 * 13 12 11 29 29 H 1.09006 * 109.47322 * 59.99793 * 16 14 13 30 30 H 1.09003 * 109.47564 * 299.99880 * 16 14 13 31 31 H 1.09001 * 109.47178 * 180.02562 * 17 16 14 32 32 H 1.08996 * 109.47510 * 59.99704 * 17 16 14 33 33 H 1.08997 * 109.47108 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47505 * 300.00333 * 18 17 16 35 35 H 1.08998 * 109.47573 * 300.00551 * 22 14 13 36 36 H 1.09007 * 109.47153 * 60.00514 * 22 14 13 37 37 H 1.07998 * 119.81325 * 180.26609 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4401 0.7000 7 6 2.0083 -1.2113 0.0005 8 1 3.0541 -1.2312 -0.2683 9 6 1.3470 -2.4082 0.3525 10 6 0.1946 -2.3790 1.1700 11 6 -0.4098 -3.5629 1.4835 12 6 0.1219 -4.7578 0.9923 13 7 -0.4912 -5.9565 1.3113 14 6 -1.6875 -5.9652 2.1568 15 1 -2.2898 -5.0823 1.9433 16 6 -2.5075 -7.2241 1.8673 17 6 -3.7572 -7.2329 2.7499 18 6 -3.3416 -7.2224 4.2224 19 6 -2.5217 -5.9636 4.5119 20 9 -3.2945 -4.8302 4.2374 21 9 -2.1412 -5.9542 5.8582 22 6 -1.2715 -5.9551 3.6291 23 7 1.2082 -4.7634 0.2294 24 6 1.8239 -3.6508 -0.1053 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1983 -1.4430 1.5386 27 1 -1.2919 -3.5752 2.1065 28 1 -0.1293 -6.7911 0.9743 29 1 -1.9052 -8.1072 2.0808 30 1 -2.8039 -7.2314 0.8184 31 1 -4.3412 -8.1300 2.5440 32 1 -4.3594 -6.3499 2.5361 33 1 -4.2319 -7.2282 4.8512 34 1 -2.7395 -8.1054 4.4363 35 1 -0.6691 -6.8380 3.8426 36 1 -0.6873 -5.0582 3.8354 37 1 2.7031 -3.6911 -0.7312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169213130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:08 Heat of formation + Delta-G solvation = -100.409381 kcal Electronic energy + Delta-G solvation = -22162.200032 eV Core-core repulsion = 18573.258135 eV Total energy + Delta-G solvation = -3588.941897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.98098 -47.99195 -40.62123 -38.99292 -36.21871 -34.92541 -32.57891 -31.50480 -31.14023 -29.71364 -26.62822 -24.23318 -23.94755 -23.29406 -22.26811 -21.00914 -19.21397 -18.48172 -18.22710 -17.70920 -17.27626 -16.98413 -16.73043 -16.01283 -15.53423 -15.23757 -15.16545 -14.74166 -14.68389 -14.32736 -14.14839 -13.96757 -13.71705 -13.57319 -13.47722 -13.25029 -13.12946 -12.98946 -12.78064 -12.25996 -12.13196 -11.87642 -11.80342 -11.58581 -11.28416 -11.22502 -10.52981 -10.20486 -9.95951 -8.70481 -8.44829 -6.16028 0.85786 1.09294 1.40467 1.51596 1.57358 2.23353 2.41311 2.79169 2.87933 3.23702 3.35609 3.45985 3.76958 3.84851 4.02337 4.14190 4.18436 4.28182 4.29138 4.51985 4.58494 4.72084 4.79509 4.86137 4.88422 4.94403 4.98135 5.11982 5.23280 5.26313 5.34648 5.38657 5.56717 5.84854 5.96321 6.44948 6.59185 6.81566 6.90573 7.12694 7.80985 8.37798 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.004188 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.872206 B = 6684.548558 C = 7249.253929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.000 4.000 10 C -0.110 4.110 11 C -0.207 4.207 12 C 0.285 3.715 13 N -0.724 5.724 14 C 0.169 3.831 15 H 0.061 0.939 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.149 4.149 19 C 0.282 3.718 20 F -0.215 7.215 21 F -0.214 7.214 22 C -0.173 4.173 23 N -0.531 5.531 24 C -0.002 4.002 25 H 0.286 0.714 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.401 0.599 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 -12.861 7.011 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.522 4.522 8 H 0.098 0.902 9 C -0.005 4.005 10 C -0.136 4.136 11 C -0.231 4.231 12 C 0.051 3.949 13 N -0.362 5.362 14 C 0.062 3.938 15 H 0.079 0.921 16 C -0.160 4.160 17 C -0.148 4.148 18 C -0.187 4.187 19 C 0.246 3.754 20 F -0.196 7.196 21 F -0.195 7.195 22 C -0.213 4.213 23 N -0.247 5.247 24 C -0.159 4.159 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.236 0.764 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.229 -13.376 6.805 17.115 hybrid contribution 0.287 1.920 0.291 1.963 sum -7.942 -11.455 7.096 15.641 Atomic orbital electron populations 1.69873 1.08967 1.30355 1.37370 1.26707 0.95469 1.04431 0.91415 0.85197 0.79038 0.75996 0.79441 1.18695 1.19391 1.18278 1.19584 0.97946 0.91889 1.42800 0.90241 1.18649 0.94218 0.94509 0.93109 1.21321 0.97663 0.96918 0.97747 1.21012 1.02698 0.92658 1.06741 1.18050 0.92253 0.86744 0.97852 1.43667 1.30828 1.04417 1.57276 1.20673 0.85831 1.00396 0.86908 0.92082 1.21863 0.96535 0.96172 1.01426 1.21477 0.97131 1.04720 0.91479 1.22585 1.01420 0.94792 0.99905 1.21521 0.91014 0.85713 0.77168 1.92976 1.77298 1.55709 1.93597 1.92977 1.92383 1.97030 1.37139 1.23085 0.96284 1.05229 0.96709 1.66621 1.09428 1.32362 1.16309 1.22395 1.02186 0.87344 1.03948 0.90331 0.86958 0.86900 0.76382 0.88823 0.90172 0.86903 0.91753 0.88183 0.86474 0.87021 0.92349 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.63 10.91 21.82 0.24 -44.39 16 2 C 0.03 1.68 5.19 85.23 0.44 2.12 16 3 Si 0.98 38.79 29.59 68.60 2.03 40.82 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.49 -26.75 9.07 23.39 0.21 -26.53 16 8 H 0.08 4.12 7.90 -2.91 -0.02 4.10 16 9 C 0.00 0.01 5.59 -21.18 -0.12 -0.10 16 10 C -0.11 -5.91 8.74 22.64 0.20 -5.72 16 11 C -0.21 -9.90 8.72 22.23 0.19 -9.71 16 12 C 0.29 12.78 7.62 133.31 1.02 13.80 16 13 N -0.72 -24.13 5.22 -324.35 -1.69 -25.82 16 14 C 0.17 4.50 2.01 44.99 0.09 4.59 16 15 H 0.06 1.94 6.07 -2.39 -0.01 1.93 16 16 C -0.12 -2.08 5.39 30.60 0.16 -1.92 16 17 C -0.11 -1.49 5.80 30.60 0.18 -1.32 16 18 C -0.15 -2.17 5.45 30.59 0.17 -2.00 16 19 C 0.28 6.69 2.10 30.61 0.06 6.75 16 20 F -0.21 -6.22 16.02 44.97 0.72 -5.50 16 21 F -0.21 -5.70 17.06 44.97 0.77 -4.93 16 22 C -0.17 -4.50 4.93 30.61 0.15 -4.35 16 23 N -0.53 -25.85 10.37 -191.20 -1.98 -27.84 16 24 C 0.00 -0.09 10.97 85.36 0.94 0.85 16 25 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 26 H 0.11 6.31 6.20 -2.91 -0.02 6.29 16 27 H 0.11 4.95 5.99 -2.91 -0.02 4.94 16 28 H 0.40 11.88 8.72 -92.71 -0.81 11.07 16 29 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.06 7.80 -2.39 -0.02 1.04 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 1.92 7.62 -2.38 -0.02 1.90 16 37 H 0.14 6.57 8.06 -2.91 -0.02 6.54 16 Total: -1.00 -64.15 307.59 4.07 -60.08 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.29 Total: 31.11 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 3.70 Total: -23.53 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -3.44 Total: -98.05 kcal Atomic # 9 Polarization: -11.92 SS G_CDS: 1.49 Total: -10.43 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -64.15 4.07 -60.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169213130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.327 kcal (2) G-P(sol) polarization free energy of solvation -64.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds