Wall clock time and date at job start Tue Mar 31 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 120.00270 * 2 1 4 4 H 1.48495 * 109.47453 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47405 * 300.00308 * 3 2 1 6 6 H 1.48506 * 109.46838 * 59.99980 * 3 2 1 7 7 C 1.39937 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99986 * 197.54877 * 7 2 1 9 9 C 1.41422 * 120.00197 * 17.53701 * 7 2 1 10 10 C 1.40792 * 120.62783 * 203.70796 * 9 7 2 11 11 N 1.31467 * 120.56608 * 180.26327 * 10 9 7 12 12 C 1.32018 * 122.05753 * 359.74808 * 11 10 9 13 13 C 1.39296 * 121.20747 * 359.97438 * 12 11 10 14 14 N 1.39723 * 120.36333 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99784 * 0.02562 * 14 13 12 16 16 H 1.08996 * 109.47425 * 325.00372 * 15 14 13 17 17 C 1.53002 * 109.47091 * 85.00197 * 15 14 13 18 18 C 1.52992 * 109.47331 * 179.97438 * 17 15 14 19 19 C 1.53008 * 109.47037 * 299.99995 * 18 17 15 20 20 C 1.53000 * 109.46847 * 60.00154 * 19 18 17 21 21 F 1.39903 * 109.47008 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.47602 * 59.99853 * 20 19 18 23 23 C 1.52996 * 109.47080 * 205.00370 * 15 14 13 24 24 C 1.38692 * 119.27584 * 359.97438 * 13 12 11 25 25 H 0.97000 * 119.99538 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.71920 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.39647 * 180.02562 * 12 11 10 28 28 H 0.97003 * 120.00054 * 180.02562 * 14 13 12 29 29 H 1.08997 * 109.47151 * 299.99894 * 17 15 14 30 30 H 1.09010 * 109.46949 * 59.99625 * 17 15 14 31 31 H 1.08994 * 109.47427 * 180.02562 * 18 17 15 32 32 H 1.09001 * 109.47233 * 59.99670 * 18 17 15 33 33 H 1.08996 * 109.47235 * 300.00150 * 19 18 17 34 34 H 1.08997 * 109.46986 * 179.97438 * 19 18 17 35 35 H 1.09011 * 109.47084 * 299.99820 * 23 15 14 36 36 H 1.08992 * 109.47516 * 59.99933 * 23 15 14 37 37 H 1.08001 * 120.93050 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3964 -1.2124 6 1 1.8836 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0503 -1.2338 0.2815 9 6 1.3502 -2.4080 -0.3701 10 6 1.8278 -3.6559 0.0738 11 7 1.2184 -4.7674 -0.2747 12 6 0.1436 -4.7666 -1.0414 13 6 -0.4001 -3.5770 -1.5207 14 7 -1.5379 -3.5967 -2.3313 15 6 -2.1661 -4.8731 -2.6811 16 1 -1.3969 -5.6364 -2.7987 17 6 -3.1309 -5.2885 -1.5687 18 6 -3.7874 -6.6212 -1.9343 19 6 -4.5584 -6.4669 -3.2468 20 6 -3.5935 -6.0516 -4.3592 21 9 -4.2986 -5.9098 -5.5593 22 9 -2.6066 -7.0315 -4.5106 23 6 -2.9369 -4.7194 -3.9938 24 6 0.2003 -2.3729 -1.1844 25 1 -0.4849 0.8401 0.0004 26 1 2.7046 -3.7006 0.7029 27 1 -0.3231 -5.7053 -1.3010 28 1 -1.9119 -2.7652 -2.6625 29 1 -2.5817 -5.3981 -0.6336 30 1 -3.9001 -4.5251 -1.4511 31 1 -4.4751 -6.9169 -1.1420 32 1 -3.0185 -7.3848 -2.0522 33 1 -5.3273 -5.7033 -3.1290 34 1 -5.0257 -7.4164 -3.5075 35 1 -3.7061 -3.9560 -3.8762 36 1 -2.2496 -4.4235 -4.7862 37 1 -0.1985 -1.4349 -1.5415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169219358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:01 Heat of formation + Delta-G solvation = -92.211320 kcal Electronic energy + Delta-G solvation = -22099.981528 eV Core-core repulsion = 18511.395126 eV Total energy + Delta-G solvation = -3588.586403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.04622 -47.03227 -38.92163 -37.62270 -34.44546 -33.87949 -30.84587 -30.30744 -29.60607 -27.20824 -25.59788 -23.04600 -22.59309 -21.78944 -20.58304 -20.00061 -17.63175 -17.22942 -16.73918 -16.48629 -15.79135 -15.45404 -15.01237 -14.76104 -14.46279 -14.41607 -13.72433 -13.69006 -13.34622 -13.14127 -12.82458 -12.71989 -12.51198 -12.32022 -11.80253 -11.69674 -11.58460 -11.34305 -11.18798 -11.06472 -10.88568 -10.67391 -10.58163 -10.49190 -9.87112 -9.53148 -9.33522 -8.07452 -7.77169 -6.86968 -6.44056 -4.48284 2.71345 3.02830 3.08369 3.09787 3.23096 3.53207 3.81567 3.86705 4.18717 4.21899 4.47225 4.63825 4.78406 4.95957 5.06043 5.16185 5.19117 5.37746 5.58292 5.67724 5.73018 5.75549 5.87277 5.97460 6.11033 6.23469 6.39683 6.55415 6.64364 6.87876 7.07685 7.13855 7.54847 7.69165 7.95275 8.17350 8.40025 8.59794 8.74517 8.84753 9.74748 10.08213 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027755 B = 0.004009 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.593030 B = 6982.482970 C = 7441.391406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.051 4.051 11 N -0.445 5.445 12 C -0.098 4.098 13 C 0.175 3.825 14 N -0.749 5.749 15 C 0.165 3.835 16 H 0.085 0.915 17 C -0.141 4.141 18 C -0.117 4.117 19 C -0.157 4.157 20 C 0.294 3.706 21 F -0.204 7.204 22 F -0.197 7.197 23 C -0.167 4.167 24 C -0.209 4.209 25 H 0.280 0.720 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.390 0.610 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 -5.875 -6.213 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.090 3.910 10 C -0.215 4.215 11 N -0.152 5.152 12 C -0.257 4.257 13 C 0.074 3.926 14 N -0.381 5.381 15 C 0.058 3.942 16 H 0.103 0.897 17 C -0.180 4.180 18 C -0.156 4.156 19 C -0.195 4.195 20 C 0.257 3.743 21 F -0.185 7.185 22 F -0.178 7.178 23 C -0.206 4.206 24 C -0.239 4.239 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.224 0.776 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.893 -6.736 -5.961 13.371 hybrid contribution -0.282 1.949 -0.608 2.061 sum -10.174 -4.787 -6.569 13.022 Atomic orbital electron populations 1.69843 1.07679 1.29129 1.34627 1.25947 0.94731 1.01452 0.92065 0.86252 0.81138 0.80762 0.78566 1.18219 1.19726 1.19933 1.19593 0.98160 0.90952 1.39377 0.89930 1.18274 0.91022 0.93402 0.88319 1.22344 1.03671 0.88089 1.07419 1.66837 1.06863 1.32072 1.09467 1.21272 1.00164 0.94415 1.09846 1.18639 0.86874 0.95594 0.91473 1.44299 1.30484 1.05718 1.57613 1.20521 0.94297 0.88664 0.90708 0.89717 1.22179 0.99159 0.96245 1.00424 1.21497 0.99849 0.98810 0.95396 1.22548 0.98219 1.04087 0.94642 1.20987 0.83381 0.87907 0.81988 1.93000 1.79554 1.96301 1.49683 1.93008 1.63715 1.64973 1.96131 1.22773 1.01905 0.95349 1.00540 1.21091 1.01768 0.95047 1.06020 0.90929 0.85953 0.86682 0.77584 0.90093 0.91514 0.90414 0.90718 0.88840 0.89626 0.88614 0.89021 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.57 10.91 55.55 0.61 -18.96 16 2 C 0.08 1.85 5.18 -17.34 -0.09 1.76 16 3 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.45 -11.63 9.08 -37.73 -0.34 -11.97 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 9 C 0.09 2.51 5.59 -106.70 -0.60 1.91 16 10 C -0.05 -1.29 10.97 -16.74 -0.18 -1.48 16 11 N -0.45 -11.17 10.33 -12.37 -0.13 -11.30 16 12 C -0.10 -2.26 10.05 -17.08 -0.17 -2.43 16 13 C 0.17 3.91 6.65 -83.70 -0.56 3.35 16 14 N -0.75 -13.06 5.25 -52.11 -0.27 -13.33 16 15 C 0.17 2.35 2.03 -67.93 -0.14 2.21 16 16 H 0.08 1.34 6.16 -51.93 -0.32 1.02 16 17 C -0.14 -1.79 5.45 -26.73 -0.15 -1.94 16 18 C -0.12 -1.19 5.80 -26.73 -0.16 -1.34 16 19 C -0.16 -1.46 5.45 -26.73 -0.15 -1.61 16 20 C 0.29 3.40 2.10 -26.76 -0.06 3.35 16 21 F -0.20 -2.54 17.06 2.25 0.04 -2.50 16 22 F -0.20 -2.66 16.02 2.25 0.04 -2.62 16 23 C -0.17 -1.97 4.92 -26.76 -0.13 -2.10 16 24 C -0.21 -5.25 8.67 -38.39 -0.33 -5.58 16 25 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 26 H 0.12 2.92 8.06 -52.48 -0.42 2.50 16 27 H 0.12 2.39 6.11 -52.49 -0.32 2.07 16 28 H 0.39 6.36 8.62 -40.82 -0.35 6.01 16 29 H 0.08 1.22 7.73 -51.93 -0.40 0.82 16 30 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.80 7.80 -51.93 -0.41 0.40 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.13 3.20 6.18 -52.49 -0.32 2.88 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -27.98 308.15 -7.79 -35.76 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.63 Total: 11.19 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -3.05 Total: -15.87 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.20 Total: -43.60 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.07 Total: -5.12 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.98 -7.79 -35.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169219358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.450 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds