Wall clock time and date at job start Tue Mar 31 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 120.00270 * 2 1 4 4 H 1.48495 * 109.47453 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47405 * 300.00308 * 3 2 1 6 6 H 1.48506 * 109.46838 * 59.99980 * 3 2 1 7 7 C 1.39937 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99986 * 197.54877 * 7 2 1 9 9 C 1.41422 * 120.00197 * 17.53701 * 7 2 1 10 10 C 1.40792 * 120.62783 * 203.70796 * 9 7 2 11 11 N 1.31467 * 120.56608 * 180.26327 * 10 9 7 12 12 C 1.32018 * 122.05753 * 359.74808 * 11 10 9 13 13 C 1.39296 * 121.20747 * 359.97438 * 12 11 10 14 14 N 1.39723 * 120.36333 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99784 * 0.02562 * 14 13 12 16 16 H 1.08996 * 109.47425 * 325.00372 * 15 14 13 17 17 C 1.53002 * 109.47091 * 85.00197 * 15 14 13 18 18 C 1.52992 * 109.47331 * 179.97438 * 17 15 14 19 19 C 1.53008 * 109.47037 * 299.99995 * 18 17 15 20 20 C 1.53000 * 109.46847 * 60.00154 * 19 18 17 21 21 F 1.39903 * 109.47008 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.47602 * 59.99853 * 20 19 18 23 23 C 1.52996 * 109.47080 * 205.00370 * 15 14 13 24 24 C 1.38692 * 119.27584 * 359.97438 * 13 12 11 25 25 H 0.97000 * 119.99538 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.71920 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.39647 * 180.02562 * 12 11 10 28 28 H 0.97003 * 120.00054 * 180.02562 * 14 13 12 29 29 H 1.08997 * 109.47151 * 299.99894 * 17 15 14 30 30 H 1.09010 * 109.46949 * 59.99625 * 17 15 14 31 31 H 1.08994 * 109.47427 * 180.02562 * 18 17 15 32 32 H 1.09001 * 109.47233 * 59.99670 * 18 17 15 33 33 H 1.08996 * 109.47235 * 300.00150 * 19 18 17 34 34 H 1.08997 * 109.46986 * 179.97438 * 19 18 17 35 35 H 1.09011 * 109.47084 * 299.99820 * 23 15 14 36 36 H 1.08992 * 109.47516 * 59.99933 * 23 15 14 37 37 H 1.08001 * 120.93050 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3964 -1.2124 6 1 1.8836 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0503 -1.2338 0.2815 9 6 1.3502 -2.4080 -0.3701 10 6 1.8278 -3.6559 0.0738 11 7 1.2184 -4.7674 -0.2747 12 6 0.1436 -4.7666 -1.0414 13 6 -0.4001 -3.5770 -1.5207 14 7 -1.5379 -3.5967 -2.3313 15 6 -2.1661 -4.8731 -2.6811 16 1 -1.3969 -5.6364 -2.7987 17 6 -3.1309 -5.2885 -1.5687 18 6 -3.7874 -6.6212 -1.9343 19 6 -4.5584 -6.4669 -3.2468 20 6 -3.5935 -6.0516 -4.3592 21 9 -4.2986 -5.9098 -5.5593 22 9 -2.6066 -7.0315 -4.5106 23 6 -2.9369 -4.7194 -3.9938 24 6 0.2003 -2.3729 -1.1844 25 1 -0.4849 0.8401 0.0004 26 1 2.7046 -3.7006 0.7029 27 1 -0.3231 -5.7053 -1.3010 28 1 -1.9119 -2.7652 -2.6625 29 1 -2.5817 -5.3981 -0.6336 30 1 -3.9001 -4.5251 -1.4511 31 1 -4.4751 -6.9169 -1.1420 32 1 -3.0185 -7.3848 -2.0522 33 1 -5.3273 -5.7033 -3.1290 34 1 -5.0257 -7.4164 -3.5075 35 1 -3.7061 -3.9560 -3.8762 36 1 -2.2496 -4.4235 -4.7862 37 1 -0.1985 -1.4349 -1.5415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169219358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:01 Heat of formation + Delta-G solvation = -107.747745 kcal Electronic energy + Delta-G solvation = -22100.655238 eV Core-core repulsion = 18511.395126 eV Total energy + Delta-G solvation = -3589.260113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.00377 -48.00250 -40.51619 -38.99643 -36.01074 -35.55428 -32.31131 -31.85467 -30.78297 -28.70583 -27.48347 -24.26120 -23.73116 -23.44438 -22.21550 -21.06142 -19.22628 -18.44496 -17.98142 -17.59384 -17.24055 -17.12286 -16.46640 -16.35486 -15.67186 -15.45554 -15.21943 -14.78219 -14.64048 -14.33403 -14.22387 -13.94456 -13.66174 -13.48245 -13.30495 -13.25917 -13.12972 -12.85507 -12.69073 -12.41754 -12.16328 -11.92662 -11.75007 -11.69602 -11.47851 -11.16752 -10.99794 -10.00760 -9.70395 -8.69469 -8.13470 -6.43652 0.93019 1.20828 1.40831 1.53278 1.56403 2.20777 2.37790 2.76514 2.87962 3.23754 3.27315 3.43635 3.78987 3.85330 4.01209 4.13241 4.14066 4.27277 4.32131 4.46327 4.65049 4.71456 4.80198 4.85477 4.90521 4.91461 4.97687 5.10792 5.17910 5.22853 5.31185 5.37066 5.71082 5.86550 6.01706 6.34018 6.72960 6.79874 6.83316 7.06364 7.81919 8.27826 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027755 B = 0.004009 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.593030 B = 6982.482970 C = 7441.391406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.039 3.961 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.483 4.483 8 H 0.082 0.918 9 C 0.072 3.928 10 C -0.079 4.079 11 N -0.456 5.456 12 C -0.105 4.105 13 C 0.190 3.810 14 N -0.738 5.738 15 C 0.163 3.837 16 H 0.068 0.932 17 C -0.136 4.136 18 C -0.111 4.111 19 C -0.150 4.150 20 C 0.290 3.710 21 F -0.208 7.208 22 F -0.211 7.211 23 C -0.161 4.161 24 C -0.234 4.234 25 H 0.290 0.710 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.398 0.602 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 -5.466 -6.856 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.513 4.513 8 H 0.100 0.900 9 C 0.067 3.933 10 C -0.243 4.243 11 N -0.163 5.163 12 C -0.265 4.265 13 C 0.086 3.914 14 N -0.369 5.369 15 C 0.057 3.943 16 H 0.086 0.914 17 C -0.175 4.175 18 C -0.149 4.149 19 C -0.188 4.188 20 C 0.254 3.746 21 F -0.189 7.189 22 F -0.192 7.192 23 C -0.199 4.199 24 C -0.265 4.265 25 H 0.101 0.899 26 H 0.145 0.855 27 H 0.154 0.846 28 H 0.233 0.767 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.642 -6.351 -6.621 14.822 hybrid contribution 0.159 1.748 -0.461 1.815 sum -11.482 -4.603 -7.082 14.254 Atomic orbital electron populations 1.69874 1.09017 1.30687 1.34222 1.26777 0.95509 1.04474 0.90947 0.85123 0.79502 0.75933 0.78975 1.18137 1.18825 1.18985 1.19857 0.98473 0.92019 1.40936 0.89979 1.18593 0.91859 0.93999 0.88883 1.22443 1.04678 0.88296 1.08897 1.66819 1.07539 1.32037 1.09890 1.21654 0.99827 0.95592 1.09456 1.18603 0.87544 0.94446 0.90808 1.44365 1.28951 1.07590 1.56027 1.20674 0.94389 0.86462 0.92797 0.91420 1.22093 0.98794 0.98258 0.98332 1.21455 1.00028 0.96742 0.96681 1.22568 0.97780 1.05698 0.92762 1.21214 0.83585 0.87275 0.82548 1.92995 1.79504 1.96288 1.50080 1.92987 1.64509 1.65510 1.96240 1.22699 1.02154 0.96475 0.98605 1.21075 1.02497 0.95631 1.07282 0.89915 0.85506 0.84575 0.76735 0.92699 0.90366 0.88224 0.91547 0.86751 0.87989 0.86394 0.89632 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.56 10.91 21.82 0.24 -40.32 16 2 C 0.04 1.92 5.18 85.25 0.44 2.36 16 3 Si 0.98 36.66 29.59 68.60 2.03 38.69 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.48 -25.60 9.08 23.47 0.21 -25.39 16 8 H 0.08 4.18 7.90 -2.91 -0.02 4.16 16 9 C 0.07 3.91 5.59 -21.21 -0.12 3.80 16 10 C -0.08 -4.21 10.97 85.37 0.94 -3.28 16 11 N -0.46 -23.34 10.33 -193.05 -1.99 -25.34 16 12 C -0.11 -4.91 10.05 84.92 0.85 -4.05 16 13 C 0.19 8.54 6.65 38.25 0.25 8.79 16 14 N -0.74 -25.22 5.25 -318.78 -1.67 -26.90 16 15 C 0.16 4.40 2.03 44.99 0.09 4.49 16 16 H 0.07 2.10 6.16 -2.39 -0.01 2.08 16 17 C -0.14 -3.20 5.45 30.59 0.17 -3.04 16 18 C -0.11 -1.94 5.80 30.59 0.18 -1.77 16 19 C -0.15 -2.27 5.45 30.60 0.17 -2.11 16 20 C 0.29 6.02 2.10 30.58 0.06 6.08 16 21 F -0.21 -4.64 17.06 44.97 0.77 -3.87 16 22 F -0.21 -5.39 16.02 44.97 0.72 -4.67 16 23 C -0.16 -3.45 4.92 30.58 0.15 -3.30 16 24 C -0.23 -12.03 8.67 23.04 0.20 -11.83 16 25 H 0.29 12.91 8.30 -92.71 -0.77 12.15 16 26 H 0.13 6.35 8.06 -2.91 -0.02 6.33 16 27 H 0.14 5.64 6.11 -2.91 -0.02 5.63 16 28 H 0.40 12.55 8.62 -92.71 -0.80 11.75 16 29 H 0.05 1.60 7.73 -2.39 -0.02 1.58 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.29 7.80 -2.39 -0.02 1.28 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.12 6.10 6.18 -2.91 -0.02 6.08 16 Total: -1.00 -61.30 308.15 3.99 -57.32 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.30 Total: 34.32 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 3.60 Total: -29.23 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -3.43 Total: -92.55 kcal Atomic # 9 Polarization: -10.03 SS G_CDS: 1.49 Total: -8.54 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -61.30 3.99 -57.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169219358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.430 kcal (2) G-P(sol) polarization free energy of solvation -61.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds