Wall clock time and date at job start Tue Mar 31 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.38744 * 111.00037 * 2 1 4 4 C 1.38678 * 120.28439 * 307.38547 * 3 2 1 5 5 C 1.38322 * 120.01246 * 179.97438 * 4 3 2 6 6 Cl 1.73603 * 119.69821 * 179.97438 * 5 4 3 7 7 C 1.39047 * 120.59729 * 359.97438 * 5 4 3 8 8 C 1.36410 * 120.57626 * 359.71500 * 7 5 4 9 9 C 1.40748 * 119.96196 * 0.56621 * 8 7 5 10 10 C 1.41023 * 120.28755 * 179.71274 * 9 8 7 11 11 H 1.07997 * 119.99640 * 203.80202 * 10 9 8 12 12 C 1.39904 * 120.00058 * 23.80250 * 10 9 8 13 13 N 1.30895 * 119.99914 * 202.93512 * 12 10 9 14 14 Si 1.86795 * 120.00137 * 22.93893 * 12 10 9 15 15 H 1.48496 * 109.47289 * 269.99810 * 14 12 10 16 16 H 1.48505 * 109.47111 * 30.00070 * 14 12 10 17 17 H 1.48504 * 109.47215 * 149.99687 * 14 12 10 18 18 C 1.46893 * 110.99879 * 236.03885 * 2 1 3 19 19 C 1.52999 * 109.47599 * 305.85978 * 18 2 1 20 20 C 1.53004 * 109.46701 * 65.86127 * 18 2 1 21 21 C 1.53002 * 109.47179 * 185.85284 * 18 2 1 22 22 N 1.46901 * 109.46882 * 62.72424 * 21 18 2 23 23 H 1.08998 * 109.46891 * 65.39811 * 1 2 3 24 24 H 1.09001 * 109.47707 * 185.40482 * 1 2 3 25 25 H 1.09006 * 109.46794 * 305.40514 * 1 2 3 26 26 H 1.07996 * 119.98858 * 359.95766 * 4 3 2 27 27 H 1.07995 * 119.71290 * 180.02562 * 7 5 4 28 28 H 1.08002 * 120.01693 * 180.28129 * 8 7 5 29 29 H 0.97007 * 120.00448 * 354.95659 * 13 12 10 30 30 H 1.08997 * 109.47067 * 66.33036 * 19 18 2 31 31 H 1.08998 * 109.46915 * 186.33399 * 19 18 2 32 32 H 1.09001 * 109.46727 * 306.32953 * 19 18 2 33 33 H 1.08996 * 109.47250 * 72.07895 * 20 18 2 34 34 H 1.09001 * 109.46822 * 192.07995 * 20 18 2 35 35 H 1.08997 * 109.46907 * 312.07076 * 20 18 2 36 36 H 1.09004 * 109.47185 * 182.71852 * 21 18 2 37 37 H 1.08997 * 109.47474 * 302.72614 * 21 18 2 38 38 H 1.00897 * 111.00106 * 56.04268 * 22 21 18 39 39 H 1.00897 * 111.00488 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9662 1.2953 0.0000 4 6 1.5380 2.2088 -0.9515 5 6 2.0371 3.4988 -0.9460 6 17 1.4959 4.6355 -2.1413 7 6 2.9682 3.8934 0.0083 8 6 3.4014 3.0165 0.9593 9 6 2.9139 1.6962 0.9722 10 6 3.3616 0.7823 1.9485 11 1 3.3123 -0.2794 1.7571 12 6 3.8695 1.2511 3.1649 13 7 4.6766 0.4998 3.8701 14 14 3.3956 2.9490 3.7827 15 1 4.3686 3.9497 3.2755 16 1 2.0348 3.2909 3.2960 17 1 3.4065 2.9564 5.2677 18 6 1.9954 -0.7661 -1.1374 19 6 1.3893 -2.1709 -1.1305 20 6 1.6273 -0.0583 -2.4430 21 6 3.5178 -0.8668 -1.0237 22 7 3.8699 -1.6036 0.1975 23 1 -0.3633 0.4278 -0.9344 24 1 -0.3634 -1.0231 0.0968 25 1 -0.3633 0.5954 0.8377 26 1 0.8150 1.9127 -1.6971 27 1 3.3480 4.9043 -0.0003 28 1 4.1214 3.3340 1.6990 29 1 4.8650 -0.4087 3.5870 30 1 0.3187 -2.1056 -1.3241 31 1 1.8625 -2.7745 -1.9050 32 1 1.5551 -2.6333 -0.1575 33 1 2.2259 0.8467 -2.5469 34 1 1.8241 -0.7226 -3.2844 35 1 0.5698 0.2052 -2.4278 36 1 3.9131 -1.3935 -1.8924 37 1 3.9460 0.1346 -0.9800 38 1 3.4314 -2.5122 0.2107 39 1 4.8709 -1.6841 0.2954 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170060141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:30 Heat of formation + Delta-G solvation = 31.610438 kcal Electronic energy + Delta-G solvation = -21538.668032 eV Core-core repulsion = 18507.247624 eV Total energy + Delta-G solvation = -3031.420408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70625 -36.87504 -35.31385 -33.94228 -33.27218 -30.94662 -29.99111 -28.86176 -26.80448 -25.86155 -24.30251 -23.42790 -21.39276 -20.26084 -18.24123 -18.04346 -16.17636 -15.65564 -15.32671 -14.71704 -14.44186 -14.13201 -13.87288 -13.38205 -13.25210 -12.75096 -12.48665 -12.41264 -12.14339 -11.98215 -11.78077 -11.64897 -11.51409 -11.11430 -11.02890 -10.78685 -10.71212 -10.38195 -10.23084 -10.19362 -9.82726 -9.75678 -9.23985 -8.91006 -7.81493 -7.70409 -7.60587 -7.28767 -7.10929 -4.31585 2.56472 2.62359 3.23604 3.39876 3.44207 3.57341 4.04573 4.47230 4.63354 5.08318 5.22544 5.39390 5.45957 5.60603 5.76754 5.83847 5.89659 5.92455 6.02150 6.09625 6.12365 6.15241 6.27888 6.30685 6.46419 6.55505 6.65405 6.70672 6.93571 7.04905 7.38276 7.54183 7.65283 7.70340 7.74866 7.92731 7.98795 8.02568 8.38589 8.67303 8.91103 9.06063 10.01340 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.010653 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.197228 B = 2627.723118 C = 4345.868600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.443 5.443 3 C -0.023 4.023 4 C -0.090 4.090 5 C -0.178 4.178 6 Cl -0.139 7.139 7 C -0.056 4.056 8 C -0.253 4.253 9 C 0.110 3.890 10 C -0.452 4.452 11 H 0.142 0.858 12 C 0.036 3.964 13 N -0.800 5.800 14 Si 1.067 2.933 15 H -0.279 1.279 16 H -0.264 1.264 17 H -0.293 1.293 18 C 0.113 3.887 19 C -0.141 4.141 20 C -0.184 4.184 21 C 0.087 3.913 22 N -0.815 5.815 23 H 0.018 0.982 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.291 0.709 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.010 0.990 37 H 0.078 0.922 38 H 0.327 0.673 39 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 -3.400 -6.849 8.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.161 5.161 3 C -0.118 4.118 4 C -0.110 4.110 5 C -0.206 4.206 6 Cl -0.111 7.111 7 C -0.075 4.075 8 C -0.272 4.272 9 C 0.105 3.895 10 C -0.478 4.478 11 H 0.160 0.840 12 C -0.186 4.186 13 N -0.421 5.421 14 Si 0.895 3.105 15 H -0.206 1.206 16 H -0.189 1.189 17 H -0.221 1.221 18 C 0.024 3.976 19 C -0.199 4.199 20 C -0.243 4.243 21 C -0.045 4.045 22 N -0.344 5.344 23 H 0.036 0.964 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.360 -2.016 -4.851 6.236 hybrid contribution -0.104 -1.134 -2.877 3.094 sum -3.464 -3.150 -7.728 9.036 Atomic orbital electron populations 1.22460 0.88937 1.00756 0.99839 1.59096 1.05224 1.12188 1.39634 1.18157 1.03894 0.88648 1.01128 1.21234 0.99586 0.92537 0.97687 1.19811 1.10475 0.90889 0.99386 1.98213 1.90511 1.63283 1.59113 1.20151 0.95363 0.98007 0.93974 1.20799 1.07457 0.95847 1.03111 1.17588 0.88616 0.90763 0.92544 1.21614 1.28841 0.99810 0.97558 0.84048 1.27401 0.90410 1.05956 0.94786 1.70550 1.20534 1.09968 1.41039 0.83708 0.78614 0.73338 0.74849 1.20626 1.18898 1.22105 1.21061 0.94684 0.93193 0.88691 1.21912 1.00255 0.95945 1.01795 1.22742 1.01759 1.01741 0.98081 1.21667 0.94121 0.99314 0.89355 1.58489 1.13559 1.22656 1.39659 0.96411 0.92305 0.91779 0.88009 0.88559 0.87231 0.89749 0.92871 0.93339 0.91267 0.91180 0.93398 0.92449 0.97212 0.90384 0.86025 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 8.37 60.06 0.50 0.97 16 2 N -0.44 -8.42 3.68 -163.57 -0.60 -9.02 16 3 C -0.02 -0.49 3.46 -83.30 -0.29 -0.78 16 4 C -0.09 -1.87 6.52 -39.39 -0.26 -2.12 16 5 C -0.18 -3.81 6.33 -39.25 -0.25 -4.06 16 6 Cl -0.14 -2.63 28.94 -51.86 -1.50 -4.13 16 7 C -0.06 -1.23 9.74 -39.94 -0.39 -1.62 16 8 C -0.25 -5.93 7.36 -39.29 -0.29 -6.22 16 9 C 0.11 2.61 4.72 -106.63 -0.50 2.11 16 10 C -0.45 -11.04 8.94 -37.90 -0.34 -11.38 16 11 H 0.14 3.46 5.04 -52.49 -0.26 3.20 16 12 C 0.04 0.90 5.37 -17.33 -0.09 0.81 16 13 N -0.80 -20.13 13.66 55.55 0.76 -19.37 16 14 Si 1.07 23.79 25.01 -169.99 -4.25 19.54 16 15 H -0.28 -5.99 6.32 56.52 0.36 -5.64 16 16 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.11 1.83 0.47 -131.60 -0.06 1.77 16 19 C -0.14 -1.92 7.19 37.16 0.27 -1.65 16 20 C -0.18 -2.88 6.84 37.16 0.25 -2.63 16 21 C 0.09 1.46 5.52 -3.82 -0.02 1.44 16 22 N -0.81 -13.30 6.83 -10.37 -0.07 -13.37 16 23 H 0.02 0.29 5.26 -51.93 -0.27 0.02 16 24 H 0.06 0.88 6.45 -51.93 -0.33 0.55 16 25 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 26 H 0.10 1.99 5.01 -52.49 -0.26 1.73 16 27 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.11 2.57 4.10 -52.49 -0.22 2.36 16 29 H 0.29 7.10 8.73 -40.82 -0.36 6.75 16 30 H 0.05 0.68 6.75 -51.93 -0.35 0.33 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.97 6.89 -51.93 -0.36 0.61 16 33 H 0.07 1.24 6.05 -51.93 -0.31 0.92 16 34 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.06 0.89 5.25 -51.93 -0.27 0.61 16 36 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.08 1.58 6.83 -51.93 -0.35 1.23 16 38 H 0.33 4.69 7.09 -39.29 -0.28 4.41 16 39 H 0.33 5.11 9.08 -39.29 -0.36 4.75 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -25.05 302.55 -7.51 -32.56 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -4.94 Total: 12.60 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -1.47 Total: -23.37 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.09 Total: -41.76 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.25 Total: 19.54 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -1.50 Total: -4.13 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.05 -7.51 -32.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170060141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.170 kcal (2) G-P(sol) polarization free energy of solvation -25.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds