Wall clock time and date at job start Tue Mar 31 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36834 * 120.00512 * 2 1 4 4 H 1.07999 * 120.00166 * 185.25437 * 3 2 1 5 5 C 1.39066 * 120.00099 * 5.25225 * 3 2 1 6 6 N 1.31358 * 119.99988 * 5.25860 * 5 3 2 7 7 Si 1.86794 * 120.00352 * 185.26515 * 5 3 2 8 8 H 1.48510 * 109.46952 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47537 * 119.99587 * 7 5 3 10 10 H 1.48499 * 109.47264 * 240.00163 * 7 5 3 11 11 C 1.34780 * 119.99294 * 179.97438 * 2 1 3 12 12 O 1.21624 * 119.99561 * 184.04077 * 11 2 1 13 13 C 1.47475 * 120.00388 * 4.04500 * 11 2 1 14 14 C 1.39549 * 120.64775 * 304.78780 * 13 11 2 15 15 N 1.31634 * 120.66342 * 179.97438 * 14 13 11 16 16 C 1.32063 * 122.18796 * 0.02562 * 15 14 13 17 17 C 1.37993 * 121.23445 * 359.97438 * 16 15 14 18 18 C 1.39635 * 119.16821 * 0.02562 * 17 16 15 19 19 C 1.48139 * 120.97871 * 179.72823 * 18 17 16 20 20 C 1.39467 * 120.13624 * 124.39849 * 19 18 17 21 21 C 1.37984 * 119.86590 * 179.80777 * 20 19 18 22 22 C 1.38346 * 120.13493 * 0.44768 * 21 20 19 23 23 C 1.38350 * 120.26602 * 359.78307 * 22 21 20 24 24 C 1.37976 * 120.13582 * 359.97438 * 23 22 21 25 25 H 1.08994 * 109.47493 * 174.39110 * 1 2 3 26 26 H 1.09005 * 109.46664 * 294.38907 * 1 2 3 27 27 H 1.08996 * 109.46784 * 54.38180 * 1 2 3 28 28 H 0.96988 * 120.00396 * 179.97438 * 6 5 3 29 29 H 1.08004 * 119.66658 * 359.94922 * 14 13 11 30 30 H 1.08002 * 119.38279 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.41388 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.06554 * 359.97438 * 20 19 18 33 33 H 1.08000 * 119.93221 * 180.22733 * 21 20 19 34 34 H 1.07995 * 119.86970 * 179.76312 * 22 21 20 35 35 H 1.08001 * 119.92986 * 179.97438 * 23 22 21 36 36 H 1.07995 * 120.07200 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1850 0.0000 4 1 3.2259 1.1869 -0.0857 5 6 1.4585 2.3869 0.1102 6 7 0.1614 2.3822 0.3180 7 14 2.3748 4.0079 -0.0373 8 1 3.8176 3.7417 -0.2677 9 1 1.8261 4.7848 -1.1775 10 1 2.2097 4.7858 1.2169 11 6 2.1388 -1.1673 0.0005 12 8 3.3527 -1.1686 0.0747 13 6 1.4041 -2.4429 -0.0890 14 6 0.3970 -2.7496 0.8271 15 7 -0.2593 -3.8878 0.7471 16 6 -0.0024 -4.7838 -0.1884 17 6 0.9760 -4.5674 -1.1372 18 6 1.7058 -3.3774 -1.1029 19 6 2.7691 -3.1062 -2.0980 20 6 2.7238 -1.9476 -2.8730 21 6 3.7193 -1.6985 -3.7954 22 6 4.7561 -2.5999 -3.9588 23 6 4.8040 -3.7533 -3.1963 24 6 3.8170 -4.0109 -2.2672 25 1 -0.3634 -1.0227 -0.1004 26 1 -0.3633 0.4244 0.9360 27 1 -0.3633 0.5985 -0.8354 28 1 -0.3204 3.2204 0.3953 29 1 0.1539 -2.0461 1.6097 30 1 -0.5693 -5.7028 -0.2120 31 1 1.1753 -5.3094 -1.8961 32 1 1.9125 -1.2454 -2.7496 33 1 3.6872 -0.7999 -4.3936 34 1 5.5309 -2.4025 -4.6847 35 1 5.6156 -4.4534 -3.3287 36 1 3.8552 -4.9118 -1.6728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196474025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:55 Heat of formation + Delta-G solvation = 48.075256 kcal Electronic energy + Delta-G solvation = -21711.926633 eV Core-core repulsion = 18547.819948 eV Total energy + Delta-G solvation = -3164.106685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30624 -38.45737 -37.95615 -34.82257 -33.19920 -31.99742 -30.84488 -30.53440 -29.43571 -26.46769 -25.07125 -23.79407 -23.30385 -22.06417 -21.12075 -19.45482 -17.33177 -17.00593 -16.55871 -15.99555 -15.85162 -14.97374 -14.59058 -14.54520 -14.15504 -13.87369 -13.65373 -13.31394 -13.11783 -12.90277 -12.79686 -12.43805 -11.94740 -11.71184 -11.38524 -11.06782 -11.04296 -10.91692 -10.85356 -10.38930 -10.31109 -9.63619 -9.41839 -9.15530 -8.77176 -8.62717 -8.35347 -8.25746 -7.95486 -6.35678 -3.88987 1.09120 1.28446 1.71908 1.88077 3.08371 3.19457 3.26501 3.71536 3.97510 4.03644 4.21074 4.61506 4.70983 4.82542 5.06109 5.10751 5.19840 5.23897 5.36225 5.40005 5.49343 5.68711 5.84695 5.85268 5.96886 6.00488 6.25764 6.30963 6.33806 6.46667 6.68174 6.77393 6.85916 6.91821 6.99350 7.25444 7.31598 7.46557 7.95398 8.19628 8.38446 9.08534 9.31723 9.87898 10.58161 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.007035 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.826449 B = 3978.879999 C = 5446.643441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.431 5.431 3 C -0.296 4.296 4 H 0.107 0.893 5 C 0.028 3.972 6 N -0.881 5.881 7 Si 0.932 3.068 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.280 1.280 11 C 0.471 3.529 12 O -0.579 6.579 13 C -0.124 4.124 14 C 0.124 3.876 15 N -0.489 5.489 16 C 0.092 3.908 17 C -0.167 4.167 18 C 0.021 3.979 19 C -0.038 4.038 20 C -0.078 4.078 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.099 4.099 25 H 0.027 0.973 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.268 0.732 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -10.277 -6.448 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.147 5.147 3 C -0.424 4.424 4 H 0.125 0.875 5 C -0.175 4.175 6 N -0.521 5.521 7 Si 0.758 3.242 8 H -0.191 1.191 9 H -0.205 1.205 10 H -0.205 1.205 11 C 0.258 3.742 12 O -0.465 6.465 13 C -0.129 4.129 14 C -0.034 4.034 15 N -0.198 5.198 16 C -0.064 4.064 17 C -0.187 4.187 18 C 0.012 3.988 19 C -0.038 4.038 20 C -0.096 4.096 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.117 4.117 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.178 0.822 30 H 0.171 0.829 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.254 -10.251 -5.774 11.768 hybrid contribution 0.801 1.129 -0.558 1.493 sum 1.055 -9.122 -6.331 11.154 Atomic orbital electron populations 1.22002 0.80225 0.96813 1.04761 1.43649 1.06106 1.04630 1.60357 1.19882 0.93671 0.81765 1.47040 0.87488 1.25374 0.95841 0.99897 0.96410 1.70127 1.07000 1.27407 1.47563 0.85761 0.79707 0.80777 0.77957 1.19104 1.20547 1.20542 1.17420 0.87310 0.82505 0.86957 1.90656 1.12990 1.86292 1.56539 1.21423 0.97597 0.97426 0.96494 1.23006 0.90258 0.93238 0.96930 1.67577 1.26971 1.02458 1.22754 1.22624 0.95292 0.97960 0.90531 1.22067 0.98105 0.97290 1.01235 1.19154 0.93743 0.92918 0.92953 1.18525 0.94555 0.95446 0.95280 1.21193 0.98865 0.95091 0.94500 1.21025 0.94451 0.99133 0.98778 1.21136 0.98198 0.94626 0.99699 1.20942 0.98658 0.97844 0.96914 1.21049 0.93921 0.98768 0.98004 0.95481 0.90334 0.91580 0.92141 0.82181 0.82873 0.84743 0.86061 0.86016 0.86382 0.86237 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 8.02 59.85 0.48 2.87 16 2 N -0.43 -10.90 3.02 -123.41 -0.37 -11.27 16 3 C -0.30 -8.03 9.55 -15.01 -0.14 -8.18 16 4 H 0.11 3.07 7.19 -52.49 -0.38 2.69 16 5 C 0.03 0.70 5.42 -17.45 -0.09 0.61 16 6 N -0.88 -22.48 9.52 55.50 0.53 -21.95 16 7 Si 0.93 20.30 29.56 -169.99 -5.02 15.28 16 8 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 9 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 C 0.47 11.58 5.50 -12.50 -0.07 11.51 16 12 O -0.58 -16.19 15.88 5.26 0.08 -16.11 16 13 C -0.12 -2.55 4.84 -104.54 -0.51 -3.06 16 14 C 0.12 2.32 8.60 -17.15 -0.15 2.17 16 15 N -0.49 -8.29 10.33 -12.97 -0.13 -8.43 16 16 C 0.09 1.30 11.16 -17.54 -0.20 1.11 16 17 C -0.17 -2.42 9.72 -39.15 -0.38 -2.80 16 18 C 0.02 0.38 5.46 -104.21 -0.57 -0.18 16 19 C -0.04 -0.69 4.58 -104.91 -0.48 -1.17 16 20 C -0.08 -1.45 8.48 -39.22 -0.33 -1.79 16 21 C -0.12 -1.87 10.03 -39.63 -0.40 -2.27 16 22 C -0.12 -1.69 10.04 -39.50 -0.40 -2.08 16 23 C -0.13 -1.76 10.03 -39.64 -0.40 -2.16 16 24 C -0.10 -1.55 9.64 -39.22 -0.38 -1.93 16 25 H 0.03 0.54 4.63 -51.93 -0.24 0.30 16 26 H 0.08 1.86 6.93 -51.93 -0.36 1.50 16 27 H 0.07 1.57 7.19 -51.93 -0.37 1.19 16 28 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.16 2.92 7.44 -52.48 -0.39 2.53 16 30 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.12 2.41 7.79 -52.49 -0.41 2.00 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -30.84 308.54 -8.10 -38.94 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.82 Total: 6.23 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -4.01 Total: -7.34 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.02 Total: -41.65 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.08 Total: -16.11 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.84 -8.10 -38.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196474025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.011 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds