Wall clock time and date at job start Tue Mar 31 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21264 * 119.99667 * 2 1 4 4 C 1.47126 * 119.99971 * 180.02562 * 2 1 3 5 5 C 1.39826 * 119.65174 * 179.97438 * 4 2 1 6 6 C 1.38135 * 119.14770 * 179.76833 * 5 4 2 7 7 C 1.39557 * 118.43998 * 0.49469 * 6 5 4 8 8 N 1.38877 * 120.38814 * 179.77983 * 7 6 5 9 9 C 1.38836 * 119.99884 * 148.99284 * 8 7 6 10 10 C 1.39605 * 119.84058 * 146.87348 * 9 8 7 11 11 C 1.36317 * 120.15725 * 180.02562 * 10 9 8 12 12 C 1.40906 * 119.83970 * 359.97438 * 11 10 9 13 13 C 1.41099 * 120.15559 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99624 * 27.13498 * 13 12 11 15 15 C 1.39871 * 120.00007 * 207.13476 * 13 12 11 16 16 N 1.30892 * 120.00482 * 15.52854 * 15 13 12 17 17 Si 1.86802 * 119.99749 * 195.52873 * 15 13 12 18 18 H 1.48500 * 109.47373 * 60.00041 * 17 15 13 19 19 H 1.48504 * 109.47236 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47310 * 299.99882 * 17 15 13 21 21 C 1.40908 * 119.69105 * 359.97438 * 12 11 10 22 22 C 1.36318 * 119.83814 * 0.02562 * 21 12 11 23 23 C 1.39655 * 119.22129 * 359.50439 * 7 6 5 24 24 N 1.31200 * 120.79031 * 0.25200 * 23 7 6 25 25 H 1.09004 * 109.46805 * 269.99840 * 1 2 3 26 26 H 1.08996 * 109.47405 * 29.99441 * 1 2 3 27 27 H 1.09000 * 109.47134 * 150.00108 * 1 2 3 28 28 H 1.08008 * 120.42421 * 0.02562 * 5 4 2 29 29 H 1.08003 * 120.78234 * 180.27873 * 6 5 4 30 30 H 0.96998 * 120.00284 * 328.99787 * 8 7 6 31 31 H 1.07993 * 119.92289 * 359.72700 * 10 9 8 32 32 H 1.08001 * 120.07815 * 179.97438 * 11 10 9 33 33 H 0.97000 * 120.00427 * 179.97438 * 16 15 13 34 34 H 1.08003 * 120.07811 * 179.97438 * 21 12 11 35 35 H 1.07999 * 119.91852 * 179.97438 * 22 21 12 36 36 H 1.07998 * 119.59818 * 180.22782 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2427 -1.2742 -0.0006 5 6 3.6409 -1.2657 -0.0011 6 6 4.3210 -2.4680 0.0032 7 6 3.5802 -3.6507 -0.0026 8 7 4.2225 -4.8820 -0.0031 9 6 3.6275 -5.9756 0.6113 10 6 3.8222 -7.2561 0.0904 11 6 3.2406 -8.3343 0.6881 12 6 2.4417 -8.1541 1.8347 13 6 1.8361 -9.2654 2.4585 14 1 2.2867 -10.2434 2.3750 15 6 0.6522 -9.1005 3.1849 16 7 -0.0558 -8.0087 3.0435 17 14 0.0815 -10.4385 4.3569 18 1 1.1153 -10.6565 5.4005 19 1 -1.1914 -10.0238 4.9996 20 1 -0.1334 -11.6991 3.6021 21 6 2.2504 -6.8589 2.3556 22 6 2.8381 -5.7897 1.7475 23 6 2.1854 -3.5814 -0.0020 24 7 1.5704 -2.4225 -0.0010 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 4.1822 -0.3310 -0.0007 29 1 5.4008 -2.4922 0.0075 30 1 5.0869 -4.9779 -0.4326 31 1 4.4311 -7.3922 -0.7911 32 1 3.3918 -9.3243 0.2838 33 1 -0.8770 -7.8945 3.5470 34 1 1.6390 -6.7135 3.2339 35 1 2.6921 -4.7963 2.1454 36 1 1.6061 -4.4929 -0.0027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210276763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:19 Heat of formation + Delta-G solvation = 18.790280 kcal Electronic energy + Delta-G solvation = -20434.837928 eV Core-core repulsion = 17269.461352 eV Total energy + Delta-G solvation = -3165.376577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.38926 -38.91271 -37.86567 -35.57482 -33.48151 -32.08371 -30.86131 -29.77367 -29.55370 -28.17899 -25.08489 -23.94634 -22.87256 -21.27800 -20.56582 -20.08331 -17.52376 -17.20999 -16.98129 -16.52746 -15.72514 -15.22714 -15.01392 -14.30861 -14.26769 -14.12046 -13.65484 -13.35535 -13.17861 -12.86825 -12.53978 -12.27466 -12.11489 -12.02662 -11.94990 -11.78419 -11.21616 -11.06378 -10.77310 -10.54739 -10.01073 -9.97420 -9.63366 -9.54452 -9.29807 -9.19132 -8.15839 -7.78445 -6.94015 -6.78056 -4.42126 0.76276 1.48658 2.36025 2.69585 2.85907 3.00178 3.01754 3.09990 3.72245 3.83264 4.08498 4.12436 4.48209 4.75355 5.03320 5.10734 5.25425 5.38078 5.48942 5.55363 5.63912 5.85278 5.97561 6.00570 6.06249 6.22121 6.27748 6.56201 6.68846 6.85937 6.89399 7.05054 7.21982 7.38210 7.48644 7.54553 7.84578 7.91074 8.08510 8.13282 8.23396 8.44385 8.71699 8.78515 10.04959 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022235 B = 0.003864 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.954092 B = 7244.605690 C = 8260.319069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.421 3.579 3 O -0.476 6.476 4 C -0.045 4.045 5 C -0.066 4.066 6 C -0.177 4.177 7 C 0.196 3.804 8 N -0.650 5.650 9 C 0.001 3.999 10 C -0.105 4.105 11 C -0.207 4.207 12 C 0.104 3.896 13 C -0.456 4.456 14 H 0.079 0.921 15 C 0.074 3.926 16 N -0.789 5.789 17 Si 0.910 3.090 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.265 1.265 21 C -0.142 4.142 22 C -0.114 4.114 23 C 0.053 3.947 24 N -0.408 5.408 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.400 0.600 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.284 0.716 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 7.005 -3.742 8.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.300 3.700 3 O -0.351 6.351 4 C -0.180 4.180 5 C -0.087 4.087 6 C -0.207 4.207 7 C 0.086 3.914 8 N -0.268 5.268 9 C -0.093 4.093 10 C -0.126 4.126 11 C -0.227 4.227 12 C 0.102 3.898 13 C -0.485 4.485 14 H 0.097 0.903 15 C -0.144 4.144 16 N -0.414 5.414 17 Si 0.735 3.265 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.162 4.162 22 C -0.134 4.134 23 C -0.116 4.116 24 N -0.119 5.119 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.235 0.765 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.139 0.861 35 H 0.109 0.891 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.213 7.641 -3.583 8.725 hybrid contribution 0.939 -0.840 0.369 1.313 sum 3.153 6.801 -3.214 8.156 Atomic orbital electron populations 1.22074 0.93315 1.04647 1.04627 1.22141 0.91825 0.86311 0.69712 1.90501 1.72527 1.33743 1.38315 1.21218 0.91539 0.93690 1.11527 1.21904 0.94306 0.98482 0.94010 1.21136 1.00212 0.90926 1.08396 1.19189 0.93444 0.86579 0.92142 1.41545 1.21415 1.05759 1.58094 1.17154 1.08516 0.85517 0.98076 1.20073 1.01815 0.91874 0.98796 1.20622 1.06601 0.96689 0.98809 1.17655 0.89615 0.93040 0.89537 1.19540 1.06131 0.95825 1.27007 0.90262 1.25927 0.96033 0.96639 0.95825 1.69805 1.12014 1.26027 1.33558 0.86325 0.78452 0.81187 0.80582 1.18768 1.20207 1.18929 1.20945 1.02128 0.91942 1.01155 1.20327 1.00168 0.98069 0.94868 1.22835 0.90570 0.95973 1.02239 1.67451 1.40151 0.97492 1.06821 0.88754 0.90255 0.88634 0.84498 0.84809 0.76519 0.88998 0.88433 0.90514 0.86107 0.89096 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 10.01 36.01 0.36 -1.81 16 2 C 0.42 6.10 7.22 -30.70 -0.22 5.88 16 3 O -0.48 -7.76 17.05 5.57 0.10 -7.66 16 4 C -0.04 -0.70 6.72 -83.13 -0.56 -1.26 16 5 C -0.07 -0.94 9.62 -39.03 -0.38 -1.31 16 6 C -0.18 -2.43 10.09 -39.13 -0.39 -2.82 16 7 C 0.20 3.09 5.88 -83.65 -0.49 2.60 16 8 N -0.65 -10.27 5.38 -8.17 -0.04 -10.31 16 9 C 0.00 0.02 5.83 -83.67 -0.49 -0.47 16 10 C -0.11 -2.08 9.89 -39.76 -0.39 -2.47 16 11 C -0.21 -4.58 9.74 -39.26 -0.38 -4.97 16 12 C 0.10 2.56 5.55 -106.79 -0.59 1.96 16 13 C -0.46 -11.25 9.03 -37.89 -0.34 -11.59 16 14 H 0.08 1.87 7.89 -52.49 -0.41 1.46 16 15 C 0.07 1.75 5.16 -17.34 -0.09 1.66 16 16 N -0.79 -19.25 10.99 55.54 0.61 -18.64 16 17 Si 0.91 17.64 29.59 -169.99 -5.03 12.61 16 18 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 21 C -0.14 -3.40 8.61 -39.26 -0.34 -3.73 16 22 C -0.11 -2.44 7.96 -39.77 -0.32 -2.76 16 23 C 0.05 0.91 9.23 -17.29 -0.16 0.75 16 24 N -0.41 -6.78 9.41 -9.70 -0.09 -6.87 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.10 7.59 -51.93 -0.39 0.70 16 28 H 0.14 1.74 7.63 -52.48 -0.40 1.34 16 29 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 30 H 0.40 5.21 8.91 -40.82 -0.36 4.84 16 31 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 34 H 0.12 3.03 6.26 -52.48 -0.33 2.70 16 35 H 0.09 1.89 6.86 -52.49 -0.36 1.53 16 36 H 0.17 3.10 6.79 -52.49 -0.36 2.75 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -26.27 314.99 -8.36 -34.63 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -3.87 Total: 11.84 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -4.78 Total: -20.35 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.48 Total: -35.82 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.10 Total: -7.66 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.27 -8.36 -34.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210276763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.420 kcal (2) G-P(sol) polarization free energy of solvation -26.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds