Wall clock time and date at job start Tue Mar 31 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21264 * 120.00198 * 2 1 4 4 C 1.47135 * 119.99694 * 180.27379 * 2 1 3 5 5 C 1.39822 * 119.64931 * 179.44791 * 4 2 1 6 6 C 1.38134 * 119.14843 * 179.79265 * 5 4 2 7 7 C 1.39557 * 118.43637 * 0.47614 * 6 5 4 8 8 N 1.38870 * 120.38863 * 179.76995 * 7 6 5 9 9 C 1.38713 * 120.00055 * 318.33217 * 8 7 6 10 10 C 1.38793 * 120.29311 * 352.63610 * 9 8 7 11 11 C 1.38139 * 120.02099 * 179.97438 * 10 9 8 12 12 C 1.38920 * 120.63251 * 0.02562 * 11 10 9 13 13 C 1.36431 * 120.60710 * 0.02562 * 12 11 10 14 14 C 1.40752 * 119.94770 * 359.67738 * 13 12 11 15 15 C 1.41007 * 120.30795 * 180.31857 * 14 13 12 16 16 H 1.08003 * 119.99989 * 149.20479 * 15 14 13 17 17 C 1.39933 * 120.00204 * 329.21293 * 15 14 13 18 18 N 1.30872 * 119.99928 * 157.05924 * 17 15 14 19 19 Si 1.86799 * 119.99761 * 337.05375 * 17 15 14 20 20 H 1.48496 * 109.47254 * 88.10317 * 19 17 15 21 21 H 1.48507 * 109.46902 * 208.09781 * 19 17 15 22 22 H 1.48502 * 109.47208 * 328.09495 * 19 17 15 23 23 C 1.39660 * 119.22764 * 359.74403 * 7 6 5 24 24 N 1.31209 * 120.78438 * 0.02754 * 23 7 6 25 25 H 1.08995 * 109.46961 * 89.99840 * 1 2 3 26 26 H 1.09002 * 109.46915 * 210.00472 * 1 2 3 27 27 H 1.09005 * 109.46840 * 329.99727 * 1 2 3 28 28 H 1.08004 * 120.42892 * 0.02562 * 5 4 2 29 29 H 1.07994 * 120.78466 * 180.22445 * 6 5 4 30 30 H 0.97001 * 120.00289 * 138.33178 * 8 7 6 31 31 H 1.08001 * 119.99105 * 359.97438 * 10 9 8 32 32 H 1.07996 * 119.68069 * 179.97438 * 11 10 9 33 33 H 1.08002 * 119.69938 * 179.97438 * 12 11 10 34 34 H 1.08002 * 120.02648 * 179.97438 * 13 12 11 35 35 H 0.97010 * 119.99795 * 179.97438 * 18 17 15 36 36 H 1.07996 * 119.60587 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2427 -1.2743 -0.0061 5 6 3.6408 -1.2657 -0.0178 6 6 4.3210 -2.4680 -0.0190 7 6 3.5801 -3.6507 -0.0187 8 7 4.2223 -4.8820 -0.0248 9 6 5.3351 -5.0799 -0.8289 10 6 5.7215 -4.1078 -1.7411 11 6 6.8310 -4.3105 -2.5387 12 6 7.5695 -5.4829 -2.4394 13 6 7.2121 -6.4559 -1.5523 14 6 6.0898 -6.2728 -0.7229 15 6 5.7176 -7.2706 0.2013 16 1 5.2354 -6.9957 1.1278 17 6 5.9729 -8.6170 -0.0819 18 7 6.0590 -9.4858 0.8930 19 14 6.1909 -9.1741 -1.8515 20 1 7.6172 -9.0370 -2.2415 21 1 5.7777 -10.5949 -1.9776 22 1 5.3511 -8.3335 -2.7422 23 6 2.1852 -3.5815 -0.0117 24 7 1.5703 -2.4225 -0.0060 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 4.1821 -0.3312 -0.0219 29 1 5.4006 -2.4923 -0.0243 30 1 3.8927 -5.6036 0.5333 31 1 5.1546 -3.1925 -1.8273 32 1 7.1265 -3.5506 -3.2469 33 1 8.4341 -5.6258 -3.0707 34 1 7.7928 -7.3639 -1.4832 35 1 6.2357 -10.4192 0.6967 36 1 1.6058 -4.4929 -0.0119 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210277769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:22 Heat of formation + Delta-G solvation = 23.520827 kcal Electronic energy + Delta-G solvation = -20720.520163 eV Core-core repulsion = 17555.348718 eV Total energy + Delta-G solvation = -3165.171445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50995 -39.05295 -38.07051 -35.31612 -33.81333 -32.15419 -31.16108 -30.56037 -29.45459 -27.94517 -25.30570 -23.77480 -23.46711 -21.35216 -20.68495 -19.98510 -17.64177 -17.20269 -17.09227 -16.65785 -16.04188 -15.16705 -15.08698 -14.44519 -14.41057 -14.19205 -13.85558 -13.53331 -13.21078 -13.04074 -12.70627 -12.46061 -12.36990 -12.15448 -12.09906 -11.93142 -11.39065 -10.92401 -10.72533 -10.47890 -10.12564 -10.02635 -9.89220 -9.55492 -9.32141 -9.20934 -8.55416 -7.86787 -7.13634 -6.81002 -4.56585 0.64387 1.41719 2.25618 2.44118 2.65846 3.01146 3.10121 3.19310 3.75977 3.84285 3.98629 4.04242 4.34138 4.62014 5.00141 5.07985 5.15064 5.24344 5.36098 5.44024 5.54849 5.75484 5.84018 5.89763 5.95912 6.11543 6.22799 6.29042 6.46223 6.55399 6.62016 6.93393 6.98401 7.16729 7.38184 7.42154 7.66426 7.78013 7.84665 8.03551 8.13821 8.23992 8.48323 8.60605 9.88218 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027623 B = 0.004178 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.398281 B = 6699.431045 C = 7318.664893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.419 3.581 3 O -0.470 6.470 4 C -0.031 4.031 5 C -0.075 4.075 6 C -0.145 4.145 7 C 0.185 3.815 8 N -0.647 5.647 9 C 0.066 3.934 10 C -0.138 4.138 11 C -0.208 4.208 12 C -0.102 4.102 13 C -0.213 4.213 14 C 0.072 3.928 15 C -0.458 4.458 16 H 0.089 0.911 17 C 0.090 3.910 18 N -0.799 5.799 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.250 1.250 23 C 0.042 3.958 24 N -0.414 5.414 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.416 0.584 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.287 0.713 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 8.062 -2.139 10.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.297 3.703 3 O -0.344 6.344 4 C -0.166 4.166 5 C -0.096 4.096 6 C -0.174 4.174 7 C 0.077 3.923 8 N -0.267 5.267 9 C -0.030 4.030 10 C -0.159 4.159 11 C -0.228 4.228 12 C -0.121 4.121 13 C -0.233 4.233 14 C 0.067 3.933 15 C -0.487 4.487 16 H 0.107 0.893 17 C -0.130 4.130 18 N -0.422 5.422 19 Si 0.734 3.266 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.173 1.173 23 C -0.125 4.125 24 N -0.125 5.125 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.255 0.745 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.557 8.444 -2.038 10.883 hybrid contribution 1.041 -0.965 -0.461 1.492 sum -5.516 7.479 -2.499 9.623 Atomic orbital electron populations 1.22069 0.93286 1.04657 1.04543 1.22155 0.91806 0.86330 0.69965 1.90522 1.72476 1.33679 1.37739 1.21248 0.91634 0.93549 1.10214 1.22016 0.94183 0.98830 0.94547 1.21612 1.01469 0.90901 1.03415 1.19114 0.92642 0.87289 0.93229 1.41618 1.29451 1.10587 1.45080 1.17768 0.90504 0.98360 0.96379 1.20564 0.98928 0.98310 0.98087 1.20224 0.99474 0.98809 1.04306 1.20360 0.98830 0.94377 0.98530 1.20770 0.99351 1.00392 1.02806 1.17339 0.90798 0.91896 0.93249 1.19125 1.35496 0.90018 1.04030 0.89315 1.26085 0.90710 0.96593 0.99642 1.69745 1.33061 1.04902 1.34530 0.86391 0.80291 0.77269 0.82672 1.18982 1.21535 1.17312 1.22677 0.90328 0.95923 1.03580 1.67386 1.40118 0.97534 1.07472 0.88790 0.88745 0.90174 0.84265 0.83694 0.74509 0.87699 0.88510 0.88726 0.87451 0.90249 0.82201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 10.01 36.01 0.36 -1.51 16 2 C 0.42 5.66 7.22 -30.70 -0.22 5.44 16 3 O -0.47 -7.40 17.05 5.57 0.10 -7.31 16 4 C -0.03 -0.45 6.72 -83.13 -0.56 -1.01 16 5 C -0.07 -1.09 9.62 -39.03 -0.38 -1.47 16 6 C -0.15 -2.25 7.45 -39.13 -0.29 -2.54 16 7 C 0.18 2.97 5.89 -83.65 -0.49 2.48 16 8 N -0.65 -11.66 5.34 -7.91 -0.04 -11.70 16 9 C 0.07 1.38 6.47 -83.28 -0.54 0.84 16 10 C -0.14 -2.70 8.04 -39.41 -0.32 -3.02 16 11 C -0.21 -4.05 10.03 -39.37 -0.40 -4.44 16 12 C -0.10 -2.07 9.96 -39.98 -0.40 -2.47 16 13 C -0.21 -4.77 7.35 -39.28 -0.29 -5.06 16 14 C 0.07 1.65 5.05 -106.63 -0.54 1.11 16 15 C -0.46 -11.07 8.80 -37.90 -0.33 -11.41 16 16 H 0.09 2.19 7.18 -52.48 -0.38 1.82 16 17 C 0.09 2.16 5.32 -17.33 -0.09 2.07 16 18 N -0.80 -19.72 13.93 55.55 0.77 -18.94 16 19 Si 0.91 19.33 25.04 -169.99 -4.26 15.08 16 20 H -0.26 -5.50 6.37 56.52 0.36 -5.14 16 21 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.25 -5.49 7.11 56.52 0.40 -5.09 16 23 C 0.04 0.61 11.13 -17.29 -0.19 0.42 16 24 N -0.41 -6.01 9.42 -9.70 -0.09 -6.10 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.09 0.91 7.60 -51.93 -0.39 0.51 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.14 1.86 7.63 -52.48 -0.40 1.46 16 29 H 0.15 2.28 6.71 -52.49 -0.35 1.93 16 30 H 0.42 7.30 7.25 -40.82 -0.30 7.00 16 31 H 0.11 1.89 5.33 -52.49 -0.28 1.61 16 32 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.11 2.41 5.01 -52.49 -0.26 2.15 16 35 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 36 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -26.13 305.90 -7.24 -33.36 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -3.65 Total: 11.56 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -4.67 Total: -20.56 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.64 Total: -36.74 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.10 Total: -7.31 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.26 Total: 15.08 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.13 -7.24 -33.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210277769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.884 kcal (2) G-P(sol) polarization free energy of solvation -26.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds