Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86294 * 109.47034 * 2 1 4 4 C 1.86297 * 109.46981 * 240.00201 * 2 1 3 5 5 C 1.86297 * 109.47116 * 120.00362 * 2 1 3 6 6 C 1.53001 * 109.47323 * 59.99933 * 5 2 1 7 7 O 1.42900 * 109.47050 * 179.97438 * 6 5 2 8 8 C 1.42895 * 113.99907 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47590 * 270.00277 * 8 7 6 10 10 N 1.27936 * 120.00125 * 114.99799 * 9 8 7 11 11 Si 1.86799 * 119.99657 * 295.00100 * 9 8 7 12 12 H 1.48497 * 109.47454 * 359.97438 * 11 9 8 13 13 H 1.48501 * 109.46994 * 119.99841 * 11 9 8 14 14 H 1.48498 * 109.47188 * 239.99548 * 11 9 8 15 15 C 1.50706 * 109.47147 * 149.99907 * 8 7 6 16 16 C 1.38267 * 119.98421 * 39.72878 * 15 8 7 17 17 C 1.38224 * 120.05296 * 179.72439 * 16 15 8 18 18 C 1.38225 * 120.02032 * 0.54895 * 17 16 15 19 19 C 1.38435 * 119.97621 * 359.72931 * 18 17 16 20 20 F 1.35097 * 120.02562 * 180.02562 * 19 18 17 21 21 C 1.38171 * 119.98924 * 220.00480 * 15 8 7 22 22 H 1.08995 * 109.46922 * 299.99694 * 1 2 3 23 23 H 1.09005 * 109.47193 * 59.99809 * 1 2 3 24 24 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47159 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47632 * 300.00512 * 3 2 1 27 27 H 1.09005 * 109.47251 * 59.99890 * 3 2 1 28 28 H 1.08998 * 109.47737 * 299.99732 * 4 2 1 29 29 H 1.08996 * 109.47367 * 60.00122 * 4 2 1 30 30 H 1.09006 * 109.47363 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.47181 * 299.99658 * 5 2 1 32 32 H 1.08997 * 109.47119 * 180.02562 * 5 2 1 33 33 H 1.08997 * 109.46614 * 59.99940 * 6 5 2 34 34 H 1.08999 * 109.46894 * 299.99725 * 6 5 2 35 35 H 1.09001 * 109.46798 * 30.00297 * 8 7 6 36 36 H 0.97000 * 120.00437 * 0.02562 * 10 9 8 37 37 H 1.07997 * 119.97365 * 359.97438 * 16 15 8 38 38 H 1.08001 * 119.99142 * 180.27450 * 17 16 15 39 39 H 1.08000 * 120.01209 * 179.74269 * 18 17 16 40 40 H 1.08001 * 120.01515 * 359.97438 * 21 15 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3208 1.5210 7 8 2.4509 -2.9946 2.6875 8 6 2.0288 -4.3563 2.7854 9 6 0.7209 -4.4246 3.5309 10 7 -0.3360 -4.8270 2.9329 11 14 0.6431 -3.9215 5.3282 12 1 1.9919 -3.4979 5.7826 13 1 -0.3097 -2.7934 5.4856 14 1 0.1853 -5.0737 6.1454 15 6 3.0715 -5.1534 3.5261 16 6 3.7126 -4.6038 4.6210 17 6 4.6650 -5.3357 5.3049 18 6 4.9858 -6.6140 4.8879 19 6 4.3487 -7.1631 3.7884 20 9 4.6610 -8.4125 3.3803 21 6 3.3905 -6.4309 3.1075 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.5739 1.7564 0.0005 26 1 2.1206 2.2703 -0.8899 27 1 2.1206 2.2703 0.8900 28 1 2.1207 -1.9058 -1.5213 29 1 2.1207 -0.3643 -2.4111 30 1 3.5740 -0.8778 -1.5214 31 1 2.1207 -0.3645 2.4111 32 1 3.5740 -0.8779 1.5213 33 1 2.3374 -2.8345 0.6310 34 1 0.8840 -2.3208 1.5211 35 1 1.8987 -4.7692 1.7850 36 1 -0.2956 -5.0886 1.9997 37 1 3.4661 -3.6034 4.9445 38 1 5.1620 -4.9071 6.1626 39 1 5.7330 -7.1842 5.4199 40 1 2.8925 -6.8585 2.2498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224906991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = -82.444305 kcal Electronic energy + Delta-G solvation = -20106.188314 eV Core-core repulsion = 16958.743703 eV Total energy + Delta-G solvation = -3147.444611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.82956 -40.83333 -38.97893 -36.37147 -33.34612 -31.93569 -31.32795 -29.50779 -28.52599 -28.51524 -27.53246 -24.05456 -23.42421 -23.27468 -21.83759 -18.64647 -18.16727 -17.84247 -17.30792 -16.83509 -16.52619 -16.30506 -15.72764 -15.53119 -14.88071 -14.42842 -14.31701 -14.15008 -14.10414 -14.01853 -13.83012 -13.48458 -13.42631 -13.36441 -13.26444 -13.18422 -12.98972 -12.93141 -12.73980 -12.36112 -11.98569 -11.57390 -11.52466 -11.34589 -10.96289 -10.89687 -10.88414 -10.33815 -9.88093 -9.61008 0.01195 0.15388 0.74882 1.18940 1.55094 1.58441 1.74181 1.76615 1.83192 1.93802 2.38483 2.52070 2.71327 3.32498 3.56364 3.64512 3.71154 3.92185 4.01045 4.05294 4.18851 4.23117 4.34538 4.38215 4.61658 4.62241 4.63904 4.66558 4.67033 4.68422 4.68902 4.72509 4.87781 5.00986 5.06955 5.16760 5.29021 5.35158 5.39553 5.45877 5.47077 5.83381 6.03390 6.70383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.016 2.984 3 C -0.449 4.449 4 C -0.453 4.453 5 C -0.416 4.416 6 C 0.067 3.933 7 O -0.361 6.361 8 C 0.108 3.892 9 C -0.043 4.043 10 N -0.614 5.614 11 Si 1.052 2.948 12 H -0.229 1.229 13 H -0.247 1.247 14 H -0.248 1.248 15 C -0.064 4.064 16 C -0.110 4.110 17 C -0.090 4.090 18 C -0.146 4.146 19 C 0.098 3.902 20 F -0.137 7.137 21 C -0.141 4.141 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.324 0.676 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 2.709 -0.115 2.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.211 2.789 3 C -0.557 4.557 4 C -0.560 4.560 5 C -0.499 4.499 6 C -0.009 4.009 7 O -0.279 6.279 8 C 0.048 3.952 9 C -0.289 4.289 10 N -0.227 5.227 11 Si 0.866 3.134 12 H -0.153 1.153 13 H -0.171 1.171 14 H -0.171 1.171 15 C -0.066 4.066 16 C -0.127 4.127 17 C -0.108 4.108 18 C -0.164 4.164 19 C 0.079 3.921 20 F -0.116 7.116 21 C -0.160 4.160 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.058 2.838 1.107 3.047 hybrid contribution 0.701 -0.757 -1.904 2.166 sum 0.759 2.081 -0.797 2.354 Atomic orbital electron populations 1.26179 1.20741 1.04396 1.04688 0.79127 0.66964 0.67177 0.65629 1.26087 1.06373 1.18549 1.04642 1.26176 1.06428 1.07905 1.15474 1.26438 1.07168 0.99603 1.16680 1.22385 0.98010 0.93106 0.87403 1.88026 1.73771 1.21638 1.44456 1.21142 0.92062 0.84217 0.97809 1.32422 0.90635 0.94110 1.11752 1.69440 1.30477 1.06931 1.15879 0.83829 0.81361 0.80692 0.67564 1.15252 1.17078 1.17123 1.19261 0.97377 0.93413 0.96500 1.21457 0.95621 1.01256 0.94413 1.21100 0.96783 0.93235 0.99711 1.21293 1.01445 0.97091 0.96621 1.17585 0.97739 0.80713 0.96038 1.91530 1.91928 1.38212 1.89931 1.20896 0.98818 0.94762 1.01532 0.91048 0.91065 0.91439 0.91111 0.91053 0.91086 0.91441 0.91066 0.91091 0.89469 0.89478 0.92840 0.93118 0.90568 0.85829 0.83505 0.84355 0.84360 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.88 8.65 101.05 0.87 1.75 16 2 Si 1.02 -3.29 12.19 -169.99 -2.07 -5.37 16 3 C -0.45 0.93 8.65 101.05 0.87 1.80 16 4 C -0.45 0.95 8.65 101.05 0.87 1.83 16 5 C -0.42 0.80 4.82 37.16 0.18 0.98 16 6 C 0.07 -0.06 5.11 37.16 0.19 0.13 16 7 O -0.36 -0.22 8.93 -35.23 -0.31 -0.53 16 8 C 0.11 0.02 2.55 -29.03 -0.07 -0.06 16 9 C -0.04 -0.03 5.07 -13.90 -0.07 -0.10 16 10 N -0.61 -0.87 13.48 56.22 0.76 -0.12 16 11 Si 1.05 0.44 27.58 -169.99 -4.69 -4.25 16 12 H -0.23 0.26 4.71 56.52 0.27 0.52 16 13 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 14 H -0.25 -0.31 7.11 56.52 0.40 0.10 16 15 C -0.06 -0.04 4.62 -104.63 -0.48 -0.53 16 16 C -0.11 -0.03 7.28 -39.58 -0.29 -0.31 16 17 C -0.09 0.05 10.04 -39.59 -0.40 -0.35 16 18 C -0.15 -0.04 10.03 -39.51 -0.40 -0.44 16 19 C 0.10 0.17 7.30 -39.42 -0.29 -0.12 16 20 F -0.14 -0.42 17.27 2.25 0.04 -0.38 16 21 C -0.14 -0.13 9.65 -39.52 -0.38 -0.52 16 22 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 24 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.14 7.79 -51.93 -0.40 -0.55 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.09 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.09 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.05 -0.10 7.73 -51.93 -0.40 -0.51 16 34 H 0.05 -0.07 7.79 -51.93 -0.40 -0.48 16 35 H 0.08 -0.08 7.34 -51.93 -0.38 -0.47 16 36 H 0.32 -0.08 8.53 -40.82 -0.35 -0.43 16 37 H 0.15 -0.08 5.72 -52.49 -0.30 -0.38 16 38 H 0.14 -0.40 8.06 -52.49 -0.42 -0.82 16 39 H 0.14 -0.18 8.06 -52.49 -0.42 -0.60 16 40 H 0.13 -0.06 8.04 -52.49 -0.42 -0.48 16 LS Contribution 339.35 15.07 5.11 5.11 Total: 0.00 -3.80 339.35 -7.12 -10.92 By element: Atomic # 1 Polarization: -2.88 SS G_CDS: -6.57 Total: -9.44 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 0.61 Total: 4.06 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: 0.76 Total: -0.12 kcal Atomic # 8 Polarization: -0.22 SS G_CDS: -0.31 Total: -0.53 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.04 Total: -0.38 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: -6.76 Total: -9.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -3.80 -7.12 -10.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224906991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.526 kcal (2) G-P(sol) polarization free energy of solvation -3.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds