Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86294 * 109.47034 * 2 1 4 4 C 1.86297 * 109.46981 * 240.00201 * 2 1 3 5 5 C 1.86297 * 109.47116 * 120.00362 * 2 1 3 6 6 C 1.53001 * 109.47323 * 59.99933 * 5 2 1 7 7 O 1.42900 * 109.47050 * 179.97438 * 6 5 2 8 8 C 1.42895 * 113.99907 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47590 * 270.00277 * 8 7 6 10 10 N 1.27936 * 120.00125 * 114.99799 * 9 8 7 11 11 Si 1.86799 * 119.99657 * 295.00100 * 9 8 7 12 12 H 1.48497 * 109.47454 * 359.97438 * 11 9 8 13 13 H 1.48501 * 109.46994 * 119.99841 * 11 9 8 14 14 H 1.48498 * 109.47188 * 239.99548 * 11 9 8 15 15 C 1.50706 * 109.47147 * 149.99907 * 8 7 6 16 16 C 1.38267 * 119.98421 * 39.72878 * 15 8 7 17 17 C 1.38224 * 120.05296 * 179.72439 * 16 15 8 18 18 C 1.38225 * 120.02032 * 0.54895 * 17 16 15 19 19 C 1.38435 * 119.97621 * 359.72931 * 18 17 16 20 20 F 1.35097 * 120.02562 * 180.02562 * 19 18 17 21 21 C 1.38171 * 119.98924 * 220.00480 * 15 8 7 22 22 H 1.08995 * 109.46922 * 299.99694 * 1 2 3 23 23 H 1.09005 * 109.47193 * 59.99809 * 1 2 3 24 24 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47159 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47632 * 300.00512 * 3 2 1 27 27 H 1.09005 * 109.47251 * 59.99890 * 3 2 1 28 28 H 1.08998 * 109.47737 * 299.99732 * 4 2 1 29 29 H 1.08996 * 109.47367 * 60.00122 * 4 2 1 30 30 H 1.09006 * 109.47363 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.47181 * 299.99658 * 5 2 1 32 32 H 1.08997 * 109.47119 * 180.02562 * 5 2 1 33 33 H 1.08997 * 109.46614 * 59.99940 * 6 5 2 34 34 H 1.08999 * 109.46894 * 299.99725 * 6 5 2 35 35 H 1.09001 * 109.46798 * 30.00297 * 8 7 6 36 36 H 0.97000 * 120.00437 * 0.02562 * 10 9 8 37 37 H 1.07997 * 119.97365 * 359.97438 * 16 15 8 38 38 H 1.08001 * 119.99142 * 180.27450 * 17 16 15 39 39 H 1.08000 * 120.01209 * 179.74269 * 18 17 16 40 40 H 1.08001 * 120.01515 * 359.97438 * 21 15 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3208 1.5210 7 8 2.4509 -2.9946 2.6875 8 6 2.0288 -4.3563 2.7854 9 6 0.7209 -4.4246 3.5309 10 7 -0.3360 -4.8270 2.9329 11 14 0.6431 -3.9215 5.3282 12 1 1.9919 -3.4979 5.7826 13 1 -0.3097 -2.7934 5.4856 14 1 0.1853 -5.0737 6.1454 15 6 3.0715 -5.1534 3.5261 16 6 3.7126 -4.6038 4.6210 17 6 4.6650 -5.3357 5.3049 18 6 4.9858 -6.6140 4.8879 19 6 4.3487 -7.1631 3.7884 20 9 4.6610 -8.4125 3.3803 21 6 3.3905 -6.4309 3.1075 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.5739 1.7564 0.0005 26 1 2.1206 2.2703 -0.8899 27 1 2.1206 2.2703 0.8900 28 1 2.1207 -1.9058 -1.5213 29 1 2.1207 -0.3643 -2.4111 30 1 3.5740 -0.8778 -1.5214 31 1 2.1207 -0.3645 2.4111 32 1 3.5740 -0.8779 1.5213 33 1 2.3374 -2.8345 0.6310 34 1 0.8840 -2.3208 1.5211 35 1 1.8987 -4.7692 1.7850 36 1 -0.2956 -5.0886 1.9997 37 1 3.4661 -3.6034 4.9445 38 1 5.1620 -4.9071 6.1626 39 1 5.7330 -7.1842 5.4199 40 1 2.8925 -6.8585 2.2498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224906991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = -70.882266 kcal Electronic energy + Delta-G solvation = -20105.686947 eV Core-core repulsion = 16958.743703 eV Total energy + Delta-G solvation = -3146.943243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.96161 -40.81809 -38.95131 -36.39313 -33.31012 -31.88355 -31.28416 -29.33235 -28.33936 -28.33248 -27.51974 -24.02076 -23.39918 -23.22389 -21.86481 -18.67276 -18.14288 -17.84258 -17.31740 -16.83915 -16.64627 -16.29655 -15.73977 -15.47117 -14.80781 -14.37679 -14.17839 -14.03436 -13.96542 -13.93533 -13.72015 -13.48234 -13.33834 -13.20040 -13.17550 -13.01118 -12.98436 -12.86089 -12.71671 -12.30404 -11.94632 -11.60647 -11.53043 -11.29289 -10.79140 -10.71883 -10.70965 -10.32435 -9.88912 -9.63691 0.01342 0.13917 0.70728 1.15620 1.54412 1.74645 1.81119 1.90647 1.96659 1.99079 2.47533 2.57271 2.80342 3.32107 3.58032 3.67301 3.75299 3.97207 4.07422 4.17859 4.21632 4.33237 4.39074 4.50814 4.62938 4.78314 4.78788 4.80664 4.83524 4.83889 4.85838 4.85989 5.00735 5.03642 5.09062 5.28272 5.32373 5.41420 5.56643 5.63845 5.65003 5.84579 6.09957 6.70456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.089 2.911 3 C -0.464 4.464 4 C -0.468 4.468 5 C -0.424 4.424 6 C 0.055 3.945 7 O -0.371 6.371 8 C 0.110 3.890 9 C -0.042 4.042 10 N -0.632 5.632 11 Si 1.053 2.947 12 H -0.204 1.204 13 H -0.258 1.258 14 H -0.262 1.262 15 C -0.071 4.071 16 C -0.116 4.116 17 C -0.088 4.088 18 C -0.149 4.149 19 C 0.075 3.925 20 F -0.150 7.150 21 C -0.148 4.148 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.331 0.669 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 3.234 0.105 3.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.279 2.721 3 C -0.571 4.571 4 C -0.574 4.574 5 C -0.506 4.506 6 C -0.020 4.020 7 O -0.289 6.289 8 C 0.050 3.950 9 C -0.288 4.288 10 N -0.247 5.247 11 Si 0.867 3.133 12 H -0.126 1.126 13 H -0.183 1.183 14 H -0.187 1.187 15 C -0.072 4.072 16 C -0.134 4.134 17 C -0.106 4.106 18 C -0.168 4.168 19 C 0.056 3.944 20 F -0.129 7.129 21 C -0.167 4.167 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.150 0.850 37 H 0.173 0.827 38 H 0.182 0.818 39 H 0.170 0.830 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.606 3.368 1.322 3.668 hybrid contribution 0.510 -0.902 -1.970 2.226 sum 1.115 2.466 -0.648 2.783 Atomic orbital electron populations 1.26387 1.22325 1.04270 1.04533 0.78000 0.64929 0.65341 0.63808 1.26277 1.06517 1.19751 1.04565 1.26359 1.06511 1.08247 1.16261 1.26610 1.07243 0.99206 1.17560 1.22597 0.98419 0.93619 0.87385 1.88008 1.73935 1.21740 1.45194 1.21112 0.91488 0.84247 0.98203 1.32503 0.90839 0.93529 1.11922 1.69441 1.31012 1.07585 1.16616 0.83855 0.82367 0.79680 0.67356 1.12613 1.18269 1.18687 1.19361 0.97655 0.93355 0.96867 1.21673 0.95697 1.01693 0.94312 1.21407 0.96311 0.92722 1.00126 1.21532 1.01474 0.97583 0.96187 1.17873 0.98811 0.80572 0.97125 1.91491 1.92151 1.39076 1.90202 1.21015 0.98846 0.94984 1.01858 0.91246 0.91195 0.91561 0.91113 0.91196 0.91128 0.91352 0.91227 0.91162 0.89494 0.89505 0.91869 0.92758 0.89588 0.85043 0.82715 0.81791 0.83009 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.85 8.65 113.37 0.98 2.83 16 2 Si 1.09 -7.45 12.19 68.60 0.84 -6.61 16 3 C -0.46 2.03 8.65 113.37 0.98 3.01 16 4 C -0.47 2.11 8.65 113.37 0.98 3.09 16 5 C -0.42 1.83 4.82 71.98 0.35 2.18 16 6 C 0.06 -0.13 5.11 71.98 0.37 0.24 16 7 O -0.37 -0.30 8.93 -148.98 -1.33 -1.63 16 8 C 0.11 0.02 2.55 29.10 0.07 0.09 16 9 C -0.04 -0.07 5.07 88.67 0.45 0.38 16 10 N -0.63 -2.06 13.48 24.11 0.33 -1.73 16 11 Si 1.05 1.05 27.58 68.60 1.89 2.94 16 12 H -0.20 0.66 4.71 99.48 0.47 1.13 16 13 H -0.26 -0.71 7.11 99.48 0.71 0.00 16 14 H -0.26 -0.88 7.11 99.48 0.71 -0.17 16 15 C -0.07 -0.09 4.62 -19.87 -0.09 -0.18 16 16 C -0.12 0.04 7.28 22.27 0.16 0.20 16 17 C -0.09 0.19 10.04 22.26 0.22 0.41 16 18 C -0.15 -0.04 10.03 22.31 0.22 0.19 16 19 C 0.08 0.29 7.30 22.38 0.16 0.46 16 20 F -0.15 -1.06 17.27 44.97 0.78 -0.28 16 21 C -0.15 -0.34 9.65 22.31 0.22 -0.13 16 22 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 23 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 24 H 0.07 -0.24 7.79 -2.38 -0.02 -0.26 16 25 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 26 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 27 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 28 H 0.07 -0.31 7.79 -2.39 -0.02 -0.33 16 29 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 30 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 31 H 0.09 -0.36 7.96 -2.38 -0.02 -0.38 16 32 H 0.09 -0.35 7.96 -2.39 -0.02 -0.37 16 33 H 0.06 -0.28 7.73 -2.39 -0.02 -0.30 16 34 H 0.05 -0.17 7.79 -2.39 -0.02 -0.19 16 35 H 0.09 -0.20 7.34 -2.39 -0.02 -0.21 16 36 H 0.33 -0.04 8.53 -92.71 -0.79 -0.83 16 37 H 0.16 -0.37 5.72 -2.91 -0.02 -0.38 16 38 H 0.16 -1.28 8.06 -2.91 -0.02 -1.30 16 39 H 0.15 -0.49 8.06 -2.91 -0.02 -0.51 16 40 H 0.14 -0.02 8.04 -2.91 -0.02 -0.04 16 Total: 0.00 -9.08 339.35 8.32 -0.76 By element: Atomic # 1 Polarization: -6.96 SS G_CDS: 0.74 Total: -6.22 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 5.08 Total: 12.77 kcal Atomic # 7 Polarization: -2.06 SS G_CDS: 0.33 Total: -1.73 kcal Atomic # 8 Polarization: -0.30 SS G_CDS: -1.33 Total: -1.63 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.78 Total: -0.28 kcal Atomic # 14 Polarization: -6.40 SS G_CDS: 2.73 Total: -3.67 kcal Total: -9.08 8.32 -0.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224906991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.125 kcal (2) G-P(sol) polarization free energy of solvation -9.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds