Wall clock time and date at job start Tue Mar 31 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35960 * 117.00037 * 2 1 4 4 C 1.38911 * 120.44765 * 359.71801 * 3 2 1 5 5 C 1.39081 * 118.35850 * 180.29622 * 4 3 2 6 6 O 1.35956 * 120.41711 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99855 * 354.50402 * 6 5 4 8 8 H 1.09000 * 110.64142 * 327.06630 * 7 6 5 9 9 C 1.55158 * 110.72142 * 203.91980 * 7 6 5 10 10 C 1.54908 * 101.58361 * 206.13168 * 9 7 6 11 11 N 1.47426 * 104.83044 * 37.01300 * 10 9 7 12 12 C 1.36938 * 125.64840 * 155.83440 * 11 10 9 13 13 H 1.07996 * 119.99898 * 180.02562 * 12 11 10 14 14 C 1.38811 * 120.00155 * 0.02562 * 12 11 10 15 15 N 1.31624 * 119.99808 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00214 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47614 * 89.99706 * 16 14 12 18 18 H 1.48503 * 109.46864 * 210.00080 * 16 14 12 19 19 H 1.48505 * 109.47029 * 329.99706 * 16 14 12 20 20 C 1.47024 * 108.70324 * 335.86796 * 11 10 9 21 21 C 1.38636 * 119.16937 * 359.94062 * 5 4 3 22 22 N 1.31925 * 120.83066 * 0.06696 * 21 5 4 23 23 C 1.31949 * 121.78984 * 359.97438 * 22 21 5 24 24 F 1.35098 * 119.62016 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.46996 * 300.00102 * 1 2 3 26 26 H 1.09000 * 109.47190 * 60.00299 * 1 2 3 27 27 H 1.09003 * 109.46808 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.82095 * 0.28134 * 4 3 2 29 29 H 1.09001 * 111.00225 * 324.21202 * 9 7 6 30 30 H 1.09002 * 111.00292 * 88.06077 * 9 7 6 31 31 H 1.09001 * 110.36130 * 155.84571 * 10 9 7 32 32 H 1.08993 * 110.36701 * 278.06109 * 10 9 7 33 33 H 0.97002 * 119.99852 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.88109 * 241.64127 * 20 11 10 35 35 H 1.09004 * 109.88219 * 120.47636 * 20 11 10 36 36 H 1.07998 * 119.58941 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2988 2.3823 -0.0059 5 6 1.9750 3.5976 -0.0120 6 8 1.2851 4.7691 -0.0184 7 6 -0.1361 4.6844 -0.1405 8 1 -0.4186 3.8319 -0.7582 9 6 -0.7166 6.0003 -0.7225 10 6 -2.1566 5.9844 -0.1517 11 7 -2.0193 5.4190 1.2029 12 6 -2.8841 5.6238 2.2447 13 1 -2.6940 5.1632 3.2028 14 6 -4.0050 6.4236 2.0692 15 7 -4.2363 6.9854 0.9016 16 14 -5.1844 6.7036 3.4905 17 1 -4.7576 7.9000 4.2596 18 1 -6.5552 6.9183 2.9612 19 1 -5.1780 5.5148 4.3806 20 6 -0.7996 4.5994 1.2503 21 6 3.3614 3.5996 -0.0107 22 7 4.0391 2.4677 -0.0051 23 6 3.4339 1.2952 -0.0001 24 9 4.1712 0.1632 0.0060 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2193 2.3497 -0.0060 29 1 -0.1621 6.8659 -0.3600 30 1 -0.7280 5.9740 -1.8121 31 1 -2.5558 6.9974 -0.1012 32 1 -2.8005 5.3536 -0.7644 33 1 -5.0199 7.5440 0.7789 34 1 -1.0569 3.5645 1.4757 35 1 -0.1207 4.9885 2.0092 36 1 3.8933 4.5394 -0.0150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228522602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:36 Heat of formation + Delta-G solvation = -61.830976 kcal Electronic energy + Delta-G solvation = -22092.380012 eV Core-core repulsion = 18492.738211 eV Total energy + Delta-G solvation = -3599.641802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.97050 -42.10796 -40.37284 -39.28594 -37.90988 -34.35568 -32.77967 -31.57354 -30.81913 -29.37508 -28.33087 -26.57552 -24.66457 -24.29592 -22.19638 -21.92117 -20.09829 -19.23880 -18.97687 -18.64986 -17.99431 -17.64005 -16.86301 -16.56202 -16.31578 -16.01524 -15.90960 -15.52220 -15.34679 -14.91118 -14.45825 -14.27867 -13.95227 -13.71980 -13.61664 -13.11260 -12.96138 -12.68705 -12.65920 -12.57697 -12.28743 -12.05161 -11.92104 -11.79612 -11.44912 -11.19563 -10.77777 -10.43809 -9.25815 -8.95486 -7.81553 -5.26665 -0.20457 -0.15687 1.48134 1.49075 1.57433 1.81255 1.84579 2.34179 2.47977 2.61076 3.25927 3.30637 3.33480 3.52541 3.61803 3.64554 3.88180 3.96753 4.17455 4.27033 4.29749 4.49199 4.57204 4.63034 4.66571 4.75295 4.83944 4.86469 4.97994 5.12324 5.43289 5.56300 5.74061 5.81998 6.11336 6.27041 6.45682 7.06545 7.71741 8.32993 9.20301 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.003995 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.971643 B = 7006.897573 C = 7508.949006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.313 6.313 3 C 0.105 3.895 4 C -0.230 4.230 5 C 0.119 3.881 6 O -0.289 6.289 7 C 0.081 3.919 8 H 0.102 0.898 9 C -0.122 4.122 10 C 0.152 3.848 11 N -0.622 5.622 12 C -0.243 4.243 13 H 0.080 0.920 14 C -0.059 4.059 15 N -0.945 5.945 16 Si 0.978 3.022 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.271 1.271 20 C 0.115 3.885 21 C 0.072 3.928 22 N -0.451 5.451 23 C 0.214 3.786 24 F -0.117 7.117 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.169 0.831 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.004 0.996 33 H 0.249 0.751 34 H 0.036 0.964 35 H 0.029 0.971 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.118 -9.762 -4.674 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.225 6.225 3 C 0.055 3.945 4 C -0.257 4.257 5 C 0.070 3.930 6 O -0.200 6.200 7 C 0.025 3.975 8 H 0.120 0.880 9 C -0.160 4.160 10 C 0.028 3.972 11 N -0.349 5.349 12 C -0.372 4.372 13 H 0.098 0.902 14 C -0.252 4.252 15 N -0.595 5.595 16 Si 0.807 3.193 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.196 1.196 20 C -0.010 4.010 21 C -0.087 4.087 22 N -0.166 5.166 23 C 0.060 3.940 24 F -0.096 7.096 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.150 0.850 28 H 0.186 0.814 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.022 0.978 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 10.975 -9.719 -4.609 15.367 hybrid contribution -1.911 -0.068 0.773 2.063 sum 9.064 -9.788 -3.836 13.881 Atomic orbital electron populations 1.23542 0.75296 1.06661 1.02678 1.86159 1.24181 1.24416 1.87713 1.19515 0.90824 0.86461 0.97691 1.21946 1.02562 0.90563 1.10594 1.20128 0.93074 0.85479 0.94319 1.86221 1.20674 1.26686 1.86393 1.23571 0.76270 1.01096 0.96586 0.88040 1.23041 0.96318 0.95493 1.01189 1.21799 0.91608 1.00320 0.83501 1.44620 1.24564 1.56270 1.09478 1.19400 1.01732 1.24989 0.91080 0.90246 1.25570 1.00110 0.99949 0.99569 1.69982 1.29058 1.37167 1.23251 0.85084 0.77810 0.78064 0.78379 1.21338 1.21844 1.19614 1.21820 0.88761 0.94772 0.95684 1.22152 0.88084 0.96018 1.02469 1.67146 1.39915 0.97096 1.12427 1.17419 0.83934 0.82782 1.09896 1.91577 1.77442 1.46264 1.94313 0.91781 0.91094 0.84981 0.81386 0.90814 0.88095 0.90110 0.97848 0.94070 0.94645 0.95319 0.78108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.83 113.37 1.11 1.30 16 2 O -0.31 -7.22 10.37 -93.11 -0.97 -8.19 16 3 C 0.11 2.65 6.71 22.62 0.15 2.80 16 4 C -0.23 -5.48 7.96 22.63 0.18 -5.30 16 5 C 0.12 2.99 6.69 22.57 0.15 3.14 16 6 O -0.29 -8.04 9.88 -93.05 -0.92 -8.96 16 7 C 0.08 2.45 2.75 31.78 0.09 2.54 16 8 H 0.10 2.61 6.29 -2.39 -0.02 2.60 16 9 C -0.12 -4.05 6.81 31.99 0.22 -3.83 16 10 C 0.15 6.86 5.89 86.85 0.51 7.37 16 11 N -0.62 -30.02 3.39 -691.99 -2.35 -32.37 16 12 C -0.24 -13.02 10.27 84.03 0.86 -12.15 16 13 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 14 C -0.06 -3.18 5.49 84.86 0.47 -2.72 16 15 N -0.95 -53.36 10.09 21.65 0.22 -53.14 16 16 Si 0.98 43.71 29.55 68.60 2.03 45.74 16 17 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C 0.12 4.38 6.83 86.73 0.59 4.97 16 21 C 0.07 1.69 11.13 84.77 0.94 2.64 16 22 N -0.45 -12.20 10.36 -196.20 -2.03 -14.23 16 23 C 0.21 5.94 8.42 84.86 0.71 6.65 16 24 F -0.12 -3.36 17.14 44.97 0.77 -2.59 16 25 H 0.06 1.01 7.70 -2.38 -0.02 0.99 16 26 H 0.07 0.98 7.69 -2.39 -0.02 0.96 16 27 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.17 3.63 4.19 -2.91 -0.01 3.62 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.08 4.22 5.87 -2.39 -0.01 4.21 16 32 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.25 13.71 8.31 -92.71 -0.77 12.93 16 34 H 0.04 1.27 7.85 -2.39 -0.02 1.25 16 35 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 36 H 0.20 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -63.33 305.30 3.85 -59.47 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.11 Total: 6.87 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.99 Total: 7.41 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -4.16 Total: -99.74 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.88 Total: -17.15 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.77 Total: -2.59 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -63.33 3.85 -59.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228522602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.358 kcal (2) G-P(sol) polarization free energy of solvation -63.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds