Wall clock time and date at job start Tue Mar 31 2020 05:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36063 * 116.99971 * 2 1 4 4 C 1.38718 * 120.50635 * 270.02167 * 3 2 1 5 5 F 1.35102 * 119.65207 * 359.97438 * 4 3 2 6 6 N 1.32103 * 120.69712 * 179.97438 * 4 3 2 7 7 C 1.32014 * 121.85229 * 0.02562 * 6 4 3 8 8 C 1.37959 * 120.94347 * 359.74012 * 7 6 4 9 9 C 1.39208 * 119.20070 * 0.48556 * 8 7 6 10 10 O 1.35847 * 120.84200 * 179.79926 * 9 8 7 11 11 C 1.42904 * 117.00290 * 5.52207 * 10 9 8 12 12 H 1.09002 * 110.87927 * 32.10950 * 11 10 9 13 13 C 1.55152 * 111.00419 * 155.98871 * 11 10 9 14 14 C 1.54323 * 102.94156 * 153.61874 * 13 11 10 15 15 N 1.47021 * 107.26931 * 337.80813 * 14 13 11 16 16 C 1.36943 * 125.64695 * 178.98299 * 15 14 13 17 17 H 1.08002 * 119.99750 * 186.59502 * 16 15 14 18 18 C 1.38808 * 120.00299 * 6.60395 * 16 15 14 19 19 N 1.31616 * 119.99688 * 7.39843 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 187.40445 * 18 16 15 21 21 H 1.48500 * 109.47136 * 84.98895 * 20 18 16 22 22 H 1.48502 * 109.46903 * 204.98455 * 20 18 16 23 23 H 1.48493 * 109.46886 * 324.98511 * 20 18 16 24 24 C 1.47422 * 108.70829 * 358.94150 * 15 14 13 25 25 H 1.09000 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47398 * 299.99650 * 1 2 3 27 27 H 1.09000 * 109.47486 * 60.00149 * 1 2 3 28 28 H 1.08002 * 119.52313 * 179.97438 * 7 6 4 29 29 H 1.08002 * 120.39806 * 180.28429 * 8 7 6 30 30 H 1.08998 * 110.72026 * 271.97719 * 13 11 10 31 31 H 1.08996 * 110.72253 * 35.25452 * 13 11 10 32 32 H 1.08997 * 109.88468 * 97.22201 * 14 13 11 33 33 H 1.08996 * 109.88538 * 218.23720 * 14 13 11 34 34 H 0.97005 * 120.00423 * 179.97438 * 19 18 16 35 35 H 1.08997 * 110.36681 * 265.29810 * 24 15 14 36 36 H 1.08990 * 110.37350 * 142.96291 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 2.3660 1.8400 -1.1952 5 9 2.0609 1.2409 -2.3670 6 7 2.9653 3.0172 -1.1996 7 6 3.2836 3.6411 -0.0805 8 6 2.9952 3.0848 1.1485 9 6 2.3685 1.8429 1.2017 10 8 2.0728 1.2625 2.3938 11 6 2.3219 2.0340 3.5706 12 1 2.1755 3.0966 3.3768 13 6 1.4320 1.5556 4.7480 14 6 2.2572 1.9548 5.9895 15 7 3.6572 2.0845 5.5597 16 6 4.7078 2.4448 6.3607 17 1 5.6827 2.6157 5.9284 18 6 4.5199 2.5904 7.7283 19 7 3.3746 2.2428 8.2758 20 14 5.8924 3.2798 8.7915 21 1 5.8377 4.7636 8.7698 22 1 5.7268 2.7987 10.1867 23 1 7.2036 2.8249 8.2634 24 6 3.7429 1.7613 4.1239 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 3.7734 4.6025 -0.1280 29 1 3.2555 3.6051 2.0585 30 1 0.4722 2.0721 4.7406 31 1 1.2902 0.4756 4.7102 32 1 1.9001 2.9072 6.3814 33 1 2.1719 1.1837 6.7550 34 1 3.2433 2.3442 9.2316 35 1 4.0088 0.7132 3.9862 36 1 4.4715 2.4061 3.6327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234258289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:41 Heat of formation + Delta-G solvation = -42.824875 kcal Electronic energy + Delta-G solvation = -22168.158806 eV Core-core repulsion = 18569.341171 eV Total energy + Delta-G solvation = -3598.817635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.14975 -40.94907 -38.79941 -38.04901 -36.46789 -32.52750 -31.31802 -30.62435 -29.37644 -27.63334 -27.07966 -24.83967 -23.49914 -23.39681 -20.66472 -20.32086 -18.92081 -18.12001 -17.71976 -16.92269 -16.78298 -16.55795 -15.33385 -15.11074 -14.88961 -14.75847 -14.63543 -14.25306 -14.12187 -13.56633 -13.31888 -12.96018 -12.73172 -12.38478 -12.20179 -11.99232 -11.55284 -11.07540 -10.90435 -10.70684 -10.61537 -10.51058 -10.19913 -10.03561 -9.82036 -9.72748 -9.14202 -8.83758 -8.73552 -6.99462 -5.83338 -3.21019 0.58312 0.97647 2.77031 3.13776 3.33784 3.38844 3.40620 3.42316 3.70085 4.38143 4.43116 4.59184 4.69127 4.99111 5.06060 5.13007 5.19908 5.21876 5.35328 5.42264 5.46601 5.52522 5.55478 5.72224 5.97450 6.11772 6.21439 6.25511 6.38616 6.47424 7.01163 7.28395 7.35148 7.45187 7.49350 7.66940 8.10756 9.06268 9.66739 10.30052 11.26919 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.031254 B = 0.003961 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.661962 B = 7067.215640 C = 7699.142695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.310 6.310 3 C -0.020 4.020 4 C 0.324 3.676 5 F -0.104 7.104 6 N -0.529 5.529 7 C 0.167 3.833 8 C -0.260 4.260 9 C 0.192 3.808 10 O -0.281 6.281 11 C 0.057 3.943 12 H 0.086 0.914 13 C -0.134 4.134 14 C 0.173 3.827 15 N -0.599 5.599 16 C -0.235 4.235 17 H 0.080 0.920 18 C -0.004 4.004 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.120 3.880 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.175 0.825 29 H 0.158 0.842 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.255 0.745 35 H 0.033 0.967 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 0.638 -14.873 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.224 6.224 3 C -0.069 4.069 4 C 0.170 3.830 5 F -0.083 7.083 6 N -0.249 5.249 7 C 0.012 3.988 8 C -0.281 4.281 9 C 0.136 3.864 10 O -0.190 6.190 11 C 0.001 3.999 12 H 0.104 0.896 13 C -0.172 4.172 14 C 0.048 3.952 15 N -0.327 5.327 16 C -0.363 4.363 17 H 0.098 0.902 18 C -0.201 4.201 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.007 4.007 25 H 0.116 0.884 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.192 0.808 29 H 0.176 0.824 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.811 0.594 -15.357 16.430 hybrid contribution 0.340 0.196 1.225 1.286 sum -5.471 0.790 -14.132 15.175 Atomic orbital electron populations 1.23091 0.78914 1.03657 1.00657 1.86197 1.20095 1.22361 1.93792 1.18552 1.07719 0.91231 0.89399 1.18189 0.95713 0.88714 0.80359 1.91621 1.89991 1.81262 1.45395 1.67153 1.16353 1.08174 1.33245 1.22346 0.92840 0.98331 0.85264 1.22488 1.06802 0.97063 1.01744 1.19598 0.90278 0.90095 0.86389 1.86219 1.78419 1.42743 1.11638 1.24146 0.99380 0.94760 0.81653 0.89583 1.23048 0.98137 1.01829 0.94175 1.21270 0.82107 1.00630 0.91161 1.44324 1.04556 1.80819 1.03032 1.19037 0.89205 1.39776 0.88295 0.90237 1.24831 0.97545 1.01292 0.96410 1.69921 1.23733 1.52054 1.10871 0.86101 0.80966 0.78757 0.79717 1.21415 1.21576 1.20587 1.21905 0.92571 0.98759 0.87430 0.88350 0.93060 0.93700 0.80815 0.82406 0.91257 0.90748 0.94511 0.91333 0.93509 0.94956 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.13 101.05 1.13 1.46 16 2 O -0.31 -4.50 10.14 -32.80 -0.33 -4.83 16 3 C -0.02 -0.29 5.78 -38.94 -0.23 -0.52 16 4 C 0.32 4.58 8.42 -17.26 -0.15 4.44 16 5 F -0.10 -1.45 17.14 2.25 0.04 -1.42 16 6 N -0.53 -7.13 10.37 -13.56 -0.14 -7.27 16 7 C 0.17 1.87 11.17 -17.58 -0.20 1.67 16 8 C -0.26 -3.20 9.02 -39.32 -0.35 -3.56 16 9 C 0.19 2.79 6.74 -38.76 -0.26 2.53 16 10 O -0.28 -4.53 9.80 -32.12 -0.31 -4.85 16 11 C 0.06 0.95 2.82 -24.58 -0.07 0.88 16 12 H 0.09 1.30 6.27 -51.93 -0.33 0.98 16 13 C -0.13 -2.35 6.69 -24.90 -0.17 -2.52 16 14 C 0.17 3.94 5.43 -3.06 -0.02 3.93 16 15 N -0.60 -14.61 3.39 -170.08 -0.58 -15.19 16 16 C -0.24 -6.30 10.26 -15.06 -0.15 -6.46 16 17 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 18 C 0.00 -0.11 5.45 -17.43 -0.09 -0.20 16 19 N -0.92 -25.97 10.48 55.49 0.58 -25.39 16 20 Si 0.91 21.33 29.56 -169.99 -5.02 16.30 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.12 2.39 6.90 -2.53 -0.02 2.37 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.16 1.82 5.88 -52.49 -0.31 1.51 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.04 0.90 7.93 -51.93 -0.41 0.49 16 33 H 0.07 1.76 6.98 -51.93 -0.36 1.40 16 34 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.85 7.89 -51.93 -0.41 0.44 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -30.33 310.01 -6.00 -36.32 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.32 Total: -2.39 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.58 Total: 4.03 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.14 Total: -47.85 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.65 Total: -9.68 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.33 -6.00 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234258289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.500 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds