Wall clock time and date at job start Tue Mar 31 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35957 * 116.99935 * 2 1 4 4 C 1.38641 * 120.41487 * 0.02562 * 3 2 1 5 5 N 1.31927 * 120.82523 * 180.02562 * 4 3 2 6 6 C 1.31945 * 121.79483 * 359.97438 * 5 4 3 7 7 F 1.35093 * 119.62102 * 179.97438 * 6 5 4 8 8 C 1.39019 * 120.75297 * 0.02562 * 6 5 4 9 9 O 1.35956 * 120.45046 * 180.02562 * 8 6 5 10 10 C 1.42901 * 116.99621 * 185.90661 * 9 8 6 11 11 C 1.53935 * 113.73243 * 254.38578 * 10 9 8 12 12 N 1.47956 * 86.18085 * 221.92354 * 11 10 9 13 13 C 1.46905 * 110.99647 * 137.58744 * 12 11 10 14 14 C 1.50696 * 109.47600 * 70.64227 * 13 12 11 15 15 H 1.08003 * 119.99752 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00289 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99830 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00031 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47223 * 59.99975 * 18 16 14 20 20 H 1.48499 * 109.47033 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46902 * 300.00106 * 18 16 14 22 22 C 1.47952 * 90.76546 * 24.69195 * 12 11 10 23 23 C 1.38911 * 119.09701 * 359.97438 * 8 6 5 24 24 H 1.08992 * 109.47361 * 59.99846 * 1 2 3 25 25 H 1.09007 * 109.47038 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46739 * 299.99442 * 1 2 3 27 27 H 1.07992 * 119.58575 * 359.74123 * 4 3 2 28 28 H 1.08996 * 112.94112 * 26.09712 * 10 9 8 29 29 H 1.09001 * 113.76210 * 336.24589 * 11 10 9 30 30 H 1.09008 * 113.75785 * 107.60884 * 11 10 9 31 31 H 1.09003 * 109.47029 * 190.63955 * 13 12 11 32 32 H 1.08994 * 109.47103 * 310.63596 * 13 12 11 33 33 H 0.97003 * 119.99909 * 179.97438 * 17 16 14 34 34 H 1.08996 * 113.76477 * 220.99189 * 22 12 11 35 35 H 1.09010 * 113.76098 * 89.62442 * 22 12 11 36 36 H 1.07991 * 120.81954 * 180.02562 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2996 2.3796 0.0005 5 7 1.8901 3.5593 0.0000 6 6 3.2041 3.6790 -0.0005 7 9 3.7625 4.9092 -0.0015 8 6 4.0204 2.5538 -0.0011 9 8 5.3737 2.6843 -0.0011 10 6 6.1409 1.4859 -0.1327 11 6 6.8070 1.0296 1.1779 12 7 7.9984 0.7312 0.3528 13 6 9.2282 1.1699 1.0260 14 6 9.5004 0.2756 2.2080 15 1 8.8268 -0.5372 2.4366 16 6 10.6091 0.4949 2.9976 17 7 11.4295 1.4843 2.7190 18 14 10.9460 -0.6133 4.4632 19 1 11.1086 -2.0140 3.9976 20 1 12.1899 -0.1706 5.1428 21 1 9.8077 -0.5366 5.4138 22 6 7.5679 1.7187 -0.6613 23 6 3.4346 1.2942 -0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.2211 2.3230 -0.0033 28 1 5.6042 0.6928 -0.6533 29 1 6.9606 1.8350 1.8961 30 1 6.3466 0.1460 1.6201 31 1 10.0639 1.1144 0.3284 32 1 9.1082 2.1978 1.3681 33 1 12.2094 1.6388 3.2747 34 1 7.7153 1.3860 -1.6887 35 1 7.9440 2.7259 -0.4811 36 1 4.0421 0.4014 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234273671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:35 Heat of formation + Delta-G solvation = -32.654729 kcal Electronic energy + Delta-G solvation = -21569.967418 eV Core-core repulsion = 17971.590793 eV Total energy + Delta-G solvation = -3598.376625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.85150 -41.14242 -39.88256 -38.43340 -37.13930 -32.93599 -32.14016 -30.17247 -29.08055 -27.86028 -25.97873 -25.42373 -24.02563 -23.10131 -21.54177 -19.62831 -19.15331 -18.09821 -17.85616 -17.12648 -16.62152 -16.38730 -15.89082 -15.41657 -15.17828 -14.93189 -14.68834 -14.47226 -13.98473 -13.38757 -13.32237 -13.20188 -12.88940 -12.45044 -12.27182 -12.20679 -11.98585 -11.76296 -11.52474 -10.96342 -10.76793 -10.48101 -10.36659 -10.10324 -9.78965 -9.33364 -9.25713 -8.55530 -8.34562 -7.98287 -6.10054 -4.12903 0.74559 0.79640 2.62391 2.90207 3.27581 3.29879 3.34098 3.36746 3.55791 4.15035 4.29377 4.36530 4.51311 4.54556 4.66598 4.73525 4.79379 4.92949 4.98363 5.10350 5.26100 5.49159 5.52956 5.62172 5.90406 5.95638 6.06370 6.24118 6.26686 6.49264 6.73770 7.09843 7.14519 7.35671 7.53159 7.76885 7.99782 8.31169 8.93397 9.51912 11.01107 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021884 B = 0.003670 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.139361 B = 7627.020563 C = 8273.776545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.113 3.887 4 C 0.004 3.996 5 N -0.442 5.442 6 C 0.241 3.759 7 F -0.105 7.105 8 C 0.117 3.883 9 O -0.284 6.284 10 C 0.035 3.965 11 C 0.009 3.991 12 N -0.471 5.471 13 C 0.163 3.837 14 C -0.515 4.515 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.009 3.991 23 C -0.180 4.180 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.169 0.831 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.585 -0.739 -6.904 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.216 6.216 3 C 0.064 3.936 4 C -0.154 4.154 5 N -0.157 5.157 6 C 0.085 3.915 7 F -0.084 7.084 8 C 0.066 3.934 9 O -0.194 6.194 10 C -0.021 4.021 11 C -0.120 4.120 12 N -0.197 5.197 13 C 0.037 3.963 14 C -0.554 4.554 15 H 0.080 0.920 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.119 4.119 23 C -0.207 4.207 24 H 0.079 0.921 25 H 0.124 0.876 26 H 0.079 0.921 27 H 0.186 0.814 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -21.490 -0.571 -7.009 22.611 hybrid contribution 0.581 -0.254 1.134 1.299 sum -20.909 -0.826 -5.875 21.734 Atomic orbital electron populations 1.23193 0.77569 1.04701 1.01821 1.86130 1.21944 1.25486 1.88054 1.19741 0.92091 0.85827 0.95916 1.22432 1.00372 0.85387 1.07196 1.66888 1.08854 1.28396 1.11522 1.17273 0.86710 0.79596 1.07943 1.91634 1.83441 1.39378 1.93944 1.19556 0.85416 0.92285 0.96128 1.86378 1.11967 1.35424 1.85628 1.25236 0.91028 0.85485 1.00324 1.24262 0.92471 1.00740 0.94568 1.68633 1.03360 1.39781 1.07876 1.20236 0.86870 0.94944 0.94252 1.21020 1.09305 1.14502 1.10545 0.91977 1.24988 0.95918 0.95512 0.98010 1.69942 1.14199 1.29923 1.39439 0.86525 0.77565 0.80863 0.82278 1.20081 1.21230 1.20204 1.24190 0.90248 0.97965 0.99538 1.20942 0.92947 0.97777 1.09008 0.92134 0.87627 0.92071 0.81365 0.87558 0.90106 0.89574 0.94573 0.97924 0.92690 0.89061 0.90415 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.30 -2.84 10.51 -19.61 -0.21 -3.04 16 3 C 0.11 1.21 6.71 -39.12 -0.26 0.95 16 4 C 0.00 0.04 10.21 -17.36 -0.18 -0.14 16 5 N -0.44 -5.93 10.36 -13.37 -0.14 -6.07 16 6 C 0.24 3.56 8.42 -17.21 -0.14 3.41 16 7 F -0.10 -1.66 17.14 2.25 0.04 -1.63 16 8 C 0.12 1.66 6.70 -39.04 -0.26 1.40 16 9 O -0.28 -4.49 10.03 -19.60 -0.20 -4.69 16 10 C 0.04 0.54 3.87 -25.80 -0.10 0.44 16 11 C 0.01 0.16 7.29 -2.77 -0.02 0.14 16 12 N -0.47 -9.87 6.25 -239.98 -1.50 -11.37 16 13 C 0.16 4.18 4.58 -4.98 -0.02 4.16 16 14 C -0.52 -14.36 8.84 -34.44 -0.30 -14.67 16 15 H 0.06 1.71 7.80 -52.48 -0.41 1.30 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.01 0.16 7.81 -2.77 -0.02 0.14 16 23 C -0.18 -2.19 9.06 -39.02 -0.35 -2.54 16 24 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 25 H 0.11 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.06 0.24 7.68 -51.93 -0.40 -0.16 16 27 H 0.17 1.15 6.30 -52.49 -0.33 0.82 16 28 H 0.11 1.38 6.06 -51.93 -0.31 1.06 16 29 H 0.08 1.63 7.78 -51.93 -0.40 1.23 16 30 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.00 0.08 7.69 -51.93 -0.40 -0.32 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.39 7.79 -51.92 -0.40 0.99 16 36 H 0.16 1.81 6.06 -52.49 -0.32 1.49 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -31.67 312.92 -6.55 -38.22 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -4.20 Total: -2.79 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.77 Total: -4.07 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.90 Total: -43.18 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.40 Total: -7.73 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.67 -6.55 -38.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234273671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.569 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds