Wall clock time and date at job start Tue Mar 31 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35810 * 117.00005 * 2 1 4 4 N 1.32130 * 119.68845 * 0.02562 * 3 2 1 5 5 C 1.32017 * 121.72588 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.90021 * 0.02654 * 5 4 3 7 7 F 1.35100 * 120.35880 * 179.97438 * 6 5 4 8 8 C 1.38947 * 119.28211 * 359.68771 * 6 5 4 9 9 C 1.38794 * 118.42032 * 0.54679 * 8 6 5 10 10 O 1.35998 * 120.47620 * 179.76761 * 9 8 6 11 11 C 1.42898 * 116.99886 * 354.07035 * 10 9 8 12 12 C 1.53517 * 114.16825 * 202.09795 * 11 10 9 13 13 N 1.47470 * 87.93103 * 220.33178 * 12 11 10 14 14 C 1.46902 * 110.99915 * 138.70569 * 13 12 11 15 15 C 1.50709 * 109.47105 * 169.99863 * 14 13 12 16 16 H 1.07992 * 119.99781 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99947 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99755 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47133 * 180.02562 * 19 17 15 21 21 H 1.48509 * 109.46999 * 299.99892 * 19 17 15 22 22 H 1.48497 * 109.47105 * 59.99887 * 19 17 15 23 23 C 1.47474 * 87.83884 * 27.01107 * 13 12 11 24 24 H 1.08999 * 109.47032 * 300.00048 * 1 2 3 25 25 H 1.09005 * 109.47368 * 60.00076 * 1 2 3 26 26 H 1.08997 * 109.47423 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.54324 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.78874 * 180.29600 * 8 6 5 29 29 H 1.08995 * 113.25721 * 335.05324 * 11 10 9 30 30 H 1.08998 * 113.47432 * 105.56024 * 12 11 10 31 31 H 1.09004 * 113.53194 * 335.10943 * 12 11 10 32 32 H 1.09000 * 109.47324 * 50.00005 * 14 13 12 33 33 H 1.08998 * 109.47041 * 289.99854 * 14 13 12 34 34 H 0.96998 * 119.99671 * 179.97438 * 18 17 15 35 35 H 1.09004 * 113.47598 * 87.75492 * 23 13 12 36 36 H 1.09000 * 113.47781 * 218.21996 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 7 1.3199 2.3143 0.0005 5 6 1.8770 3.5111 0.0010 6 6 3.2522 3.6542 0.0005 7 9 3.8108 4.8843 0.0005 8 6 4.0535 2.5190 0.0060 9 6 3.4373 1.2754 0.0003 10 8 4.1813 0.1370 0.0006 11 6 5.5969 0.2871 -0.1245 12 6 6.3180 -0.9640 -0.6457 13 7 7.3878 -0.6890 0.3313 14 6 7.8494 -1.9290 0.9695 15 6 9.0951 -1.6485 1.7700 16 1 9.5032 -0.6491 1.8012 17 6 9.7143 -2.6679 2.4617 18 7 9.2174 -3.8850 2.4232 19 14 11.2579 -2.3200 3.4545 20 1 11.7252 -3.5738 4.0985 21 1 12.3190 -1.8012 2.5543 22 1 10.9569 -1.3087 4.4993 23 6 6.3768 -0.0109 1.1637 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.2500 4.3904 0.0019 28 1 5.1303 2.6025 0.0106 29 1 5.8893 1.2111 -0.6233 30 1 6.6436 -0.8773 -1.6823 31 1 5.7785 -1.8907 -0.4496 32 1 8.0698 -2.6719 0.2029 33 1 7.0706 -2.3091 1.6305 34 1 9.6532 -4.6023 2.9095 35 1 5.8523 -0.6827 1.8433 36 1 6.7524 0.8836 1.6606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234886150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:53 Heat of formation + Delta-G solvation = -32.585129 kcal Electronic energy + Delta-G solvation = -21534.154674 eV Core-core repulsion = 17935.781068 eV Total energy + Delta-G solvation = -3598.373606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.14381 -41.16727 -39.80595 -38.01065 -37.24927 -32.94415 -31.99495 -30.42591 -29.18566 -27.41898 -25.77207 -25.44280 -23.81749 -23.28536 -21.59032 -19.74785 -18.97247 -18.41258 -17.87751 -16.70389 -16.55801 -16.23564 -15.67361 -15.43940 -15.25698 -14.90003 -14.85414 -14.47773 -14.06118 -13.68203 -13.52716 -12.87743 -12.81821 -12.28528 -12.22303 -12.11370 -11.97361 -11.38564 -11.29110 -11.00600 -10.69820 -10.44366 -10.28949 -10.25549 -9.86120 -9.58368 -9.31869 -8.49049 -8.16125 -8.07138 -6.08131 -4.10191 0.72132 0.78877 2.73367 3.01859 3.29738 3.31385 3.35233 3.38416 3.80529 4.03134 4.37167 4.40086 4.54056 4.59875 4.75315 4.80316 4.98029 5.12462 5.14691 5.27071 5.37812 5.43948 5.53988 5.66866 5.88871 5.98091 6.06607 6.13280 6.18331 6.41670 6.84481 7.08250 7.19654 7.45774 7.54733 7.74901 8.00734 8.35194 8.96430 9.54134 11.02901 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.003561 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.685715 B = 7861.721600 C = 8636.413717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.291 6.291 3 C 0.288 3.712 4 N -0.480 5.480 5 C 0.064 3.936 6 C 0.056 3.944 7 F -0.128 7.128 8 C -0.177 4.177 9 C 0.111 3.889 10 O -0.278 6.278 11 C 0.035 3.965 12 C 0.006 3.994 13 N -0.459 5.459 14 C 0.161 3.839 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.275 1.275 22 H -0.277 1.277 23 C -0.003 4.003 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.172 0.828 28 H 0.164 0.836 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.007 0.993 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.757 12.384 -5.995 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.198 6.198 3 C 0.106 3.894 4 N -0.205 5.205 5 C -0.091 4.091 6 C 0.034 3.966 7 F -0.107 7.107 8 C -0.203 4.203 9 C 0.061 3.939 10 O -0.189 6.189 11 C -0.022 4.022 12 C -0.123 4.123 13 N -0.184 5.184 14 C 0.035 3.965 15 C -0.547 4.547 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.729 3.271 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.132 4.132 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.189 0.811 28 H 0.181 0.819 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.909 11.972 -6.096 21.597 hybrid contribution 1.097 0.110 0.893 1.418 sum -15.812 12.082 -5.203 20.569 Atomic orbital electron populations 1.22902 0.77237 1.03221 1.02268 1.86399 1.22620 1.22929 1.87804 1.19188 0.86584 0.85653 0.97949 1.67424 1.38297 0.97691 1.17059 1.22287 0.90899 0.94877 1.01075 1.18291 0.92095 0.80331 1.05870 1.91526 1.85591 1.39541 1.93994 1.21635 1.02458 0.90091 1.06145 1.18789 0.88890 0.86893 0.99359 1.86374 1.19839 1.26547 1.86101 1.24718 0.75843 1.01206 1.00393 1.24034 0.92467 0.95845 0.99938 1.69054 1.18892 1.22533 1.07929 1.20298 0.96255 0.85797 0.94136 1.21031 1.09479 0.95662 1.28575 0.91825 1.25004 0.97876 0.94954 0.96786 1.69946 1.40469 1.00542 1.42848 0.86509 0.83027 0.77435 0.80151 1.21283 1.20099 1.20214 1.24304 0.92718 1.01103 0.95123 0.92284 0.92330 0.88402 0.81115 0.81897 0.87374 0.89481 0.90578 0.94943 0.97475 0.92745 0.90425 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.40 16 2 O -0.29 -3.89 10.27 -33.58 -0.34 -4.23 16 3 C 0.29 3.86 7.50 -17.02 -0.13 3.74 16 4 N -0.48 -5.69 9.21 -13.15 -0.12 -5.82 16 5 C 0.06 0.65 11.16 -17.46 -0.19 0.45 16 6 C 0.06 0.62 7.34 -39.31 -0.29 0.33 16 7 F -0.13 -1.40 17.28 2.25 0.04 -1.36 16 8 C -0.18 -2.11 9.10 -39.11 -0.36 -2.46 16 9 C 0.11 1.52 6.71 -38.97 -0.26 1.26 16 10 O -0.28 -4.31 9.98 -34.16 -0.34 -4.65 16 11 C 0.03 0.53 4.05 -26.20 -0.11 0.42 16 12 C 0.01 0.11 7.52 -7.56 -0.06 0.05 16 13 N -0.46 -9.68 6.32 -246.15 -1.55 -11.24 16 14 C 0.16 4.15 4.57 -4.97 -0.02 4.12 16 15 C -0.51 -14.35 9.39 -34.44 -0.32 -14.67 16 16 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 19 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.00 -0.06 7.55 -7.56 -0.06 -0.12 16 24 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 25 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.16 1.76 6.04 -52.49 -0.32 1.45 16 29 H 0.11 1.40 6.02 -51.93 -0.31 1.09 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.36 7.91 -51.93 -0.41 0.95 16 32 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.01 0.20 7.30 -51.93 -0.38 -0.18 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 35 H 0.08 1.51 7.42 -51.93 -0.39 1.12 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -31.06 315.53 -7.00 -38.06 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.30 Total: -2.24 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.84 Total: -4.01 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.94 Total: -42.92 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.69 Total: -8.88 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.06 -7.00 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234886150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.474 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds