Wall clock time and date at job start Tue Mar 31 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47193 * 2 1 4 4 N 1.46897 * 109.47440 * 179.72533 * 3 2 1 5 5 C 1.46898 * 110.99840 * 298.12430 * 4 3 2 6 6 C 1.50693 * 109.47495 * 293.08722 * 5 4 3 7 7 H 1.08004 * 119.99618 * 354.96377 * 6 5 4 8 8 C 1.37878 * 120.00440 * 174.96823 * 6 5 4 9 9 N 1.31516 * 119.99735 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00102 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47026 * 89.99486 * 10 8 6 12 12 H 1.48497 * 109.46974 * 209.99803 * 10 8 6 13 13 H 1.48497 * 109.46809 * 329.99654 * 10 8 6 14 14 C 1.46902 * 111.00249 * 62.08012 * 4 3 2 15 15 C 1.50698 * 109.47069 * 66.04574 * 14 4 3 16 16 N 1.31876 * 119.62845 * 270.02141 * 15 14 4 17 17 C 1.31852 * 121.74023 * 179.97438 * 16 15 14 18 18 C 1.38228 * 120.79173 * 359.74480 * 17 16 15 19 19 C 1.38609 * 119.17506 * 0.50635 * 18 17 16 20 20 C 1.50706 * 120.79620 * 179.77628 * 19 18 17 21 21 C 1.38306 * 119.62778 * 90.00327 * 15 14 4 22 22 Cl 1.73599 * 120.42780 * 0.04360 * 21 15 14 23 23 H 1.09001 * 109.46693 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47270 * 299.99862 * 1 2 3 25 25 H 1.08997 * 109.47001 * 60.00350 * 1 2 3 26 26 H 1.09005 * 109.47378 * 240.00049 * 2 1 3 27 27 H 1.08999 * 109.47724 * 119.99801 * 2 1 3 28 28 H 1.08998 * 109.47067 * 59.72141 * 3 2 1 29 29 H 1.09000 * 109.47189 * 299.72532 * 3 2 1 30 30 H 1.09003 * 109.47132 * 53.08461 * 5 4 3 31 31 H 1.08999 * 109.47282 * 173.08144 * 5 4 3 32 32 H 0.96999 * 119.99822 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.46725 * 306.04811 * 14 4 3 34 34 H 1.08995 * 109.47335 * 186.04813 * 14 4 3 35 35 H 1.07997 * 119.60283 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.41367 * 180.28401 * 18 17 16 37 37 H 1.08997 * 109.47029 * 269.72208 * 20 19 18 38 38 H 1.09003 * 109.46888 * 149.71783 * 20 19 18 39 39 H 1.09001 * 109.46948 * 29.72212 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0066 5 6 4.0299 0.7981 1.2195 6 6 3.6843 1.6374 2.4224 7 1 3.2050 2.5964 2.2920 8 6 3.9801 1.1812 3.6895 9 7 4.5634 0.0132 3.8483 10 14 3.5523 2.2220 5.1805 11 1 2.1841 1.8809 5.6463 12 1 4.5270 1.9529 6.2681 13 1 3.6058 3.6596 4.8124 14 6 4.0409 0.7985 -1.2017 15 6 3.6878 1.6275 -2.4097 16 7 2.5574 1.3991 -3.0493 17 6 2.2071 2.0994 -4.1102 18 6 3.0182 3.1106 -4.5901 19 6 4.2173 3.3772 -3.9479 20 6 5.1318 4.4679 -4.4431 21 6 4.5528 2.6195 -2.8347 22 17 6.0391 2.9127 -1.9869 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6726 1.9578 0.8875 29 1 1.6807 1.9549 -0.8924 30 1 3.5834 -0.1906 1.3260 31 1 5.1129 0.7012 1.1430 32 1 4.7711 -0.3080 4.7397 33 1 3.6070 -0.1962 -1.3042 34 1 5.1248 0.7157 -1.1221 35 1 1.2730 1.8833 -4.6074 36 1 2.7230 3.6833 -5.4568 37 1 5.8323 4.0534 -5.1681 38 1 5.6847 4.8878 -3.6028 39 1 4.5400 5.2513 -4.9165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235586992.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:07 Heat of formation + Delta-G solvation = 22.618298 kcal Electronic energy + Delta-G solvation = -20327.267421 eV Core-core repulsion = 17295.457085 eV Total energy + Delta-G solvation = -3031.810337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35604 -37.29558 -36.38401 -33.93644 -32.71950 -32.35147 -30.87125 -27.97340 -27.35438 -26.14740 -24.13614 -22.87844 -21.99403 -21.18733 -19.09684 -16.96132 -16.46424 -16.17677 -15.43362 -15.25335 -14.69485 -14.29224 -14.17123 -13.73355 -13.42306 -13.08422 -12.81977 -12.76913 -12.64334 -12.19443 -11.74784 -11.64969 -11.60838 -11.31673 -11.04426 -10.90090 -10.71997 -10.68296 -10.52917 -10.41574 -9.90520 -9.62823 -9.40425 -9.34747 -9.14007 -8.67096 -8.37331 -7.10405 -5.97407 -3.97523 1.04669 1.17687 2.30728 3.34956 3.41129 3.45702 3.70335 4.38751 4.49360 4.56068 4.62788 4.96529 5.22055 5.28453 5.33199 5.38355 5.41197 5.58641 5.65481 5.68714 5.75239 5.85917 6.00217 6.10938 6.17795 6.19061 6.26300 6.51281 6.54741 6.60765 6.67063 6.86194 7.09452 7.36271 7.49747 7.86185 8.01556 8.14569 8.25876 8.59593 9.10172 9.65972 11.13276 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.005548 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.101812 B = 5045.470156 C = 6033.468504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.158 4.158 3 C 0.069 3.931 4 N -0.524 5.524 5 C 0.191 3.809 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.090 3.910 15 C 0.169 3.831 16 N -0.467 5.467 17 C 0.101 3.899 18 C -0.177 4.177 19 C -0.039 4.039 20 C -0.119 4.119 21 C -0.075 4.075 22 Cl -0.041 7.041 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.005 0.995 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.054 5.063 -17.506 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C -0.059 4.059 4 N -0.247 5.247 5 C 0.066 3.934 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.039 4.039 15 C 0.031 3.969 16 N -0.177 5.177 17 C -0.056 4.056 18 C -0.197 4.197 19 C -0.048 4.048 20 C -0.175 4.175 21 C -0.105 4.105 22 Cl -0.012 7.012 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.210 4.807 -16.963 17.769 hybrid contribution 0.119 0.344 0.592 0.695 sum -2.091 5.151 -16.371 17.289 Atomic orbital electron populations 1.21603 0.96680 1.00431 1.00956 1.22091 0.95473 1.00178 1.01982 1.22018 0.88001 0.94818 1.01075 1.62388 1.06852 1.54180 1.01279 1.19791 0.95079 0.93460 0.85041 1.21110 1.38676 1.04166 0.89906 0.92002 1.24949 0.95502 0.95123 0.98928 1.69956 1.42528 1.18892 1.22531 0.86553 0.78001 0.80768 0.82434 1.20810 1.21351 1.19847 1.21079 1.00742 0.94513 0.87521 1.21359 0.88125 0.92441 0.95011 1.67739 1.15481 1.27070 1.07384 1.22796 0.99050 0.91508 0.92245 1.21930 0.94893 1.00736 1.02141 1.20201 0.95534 0.95957 0.93113 1.20868 0.98498 0.95894 1.02258 1.21770 0.92301 1.00009 0.96397 1.98377 1.31290 1.94891 1.76634 0.93818 0.93098 0.93506 0.92499 0.91025 0.90515 0.92843 0.97723 0.95650 0.93038 0.93066 0.89444 0.82577 0.84542 0.90332 0.90315 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 37.15 0.37 -1.87 16 2 C -0.16 -3.01 5.28 -26.73 -0.14 -3.15 16 3 C 0.07 1.41 4.92 -3.82 -0.02 1.40 16 4 N -0.52 -11.42 4.69 -237.52 -1.11 -12.53 16 5 C 0.19 4.92 4.52 -4.98 -0.02 4.90 16 6 C -0.50 -14.00 8.40 -34.44 -0.29 -14.29 16 7 H 0.06 1.74 7.37 -52.48 -0.39 1.36 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.09 1.71 4.65 -4.98 -0.02 1.69 16 15 C 0.17 2.86 5.55 -82.55 -0.46 2.40 16 16 N -0.47 -7.32 9.16 -9.45 -0.09 -7.41 16 17 C 0.10 1.23 11.18 -17.55 -0.20 1.04 16 18 C -0.18 -1.91 9.82 -39.45 -0.39 -2.30 16 19 C -0.04 -0.49 5.92 -104.28 -0.62 -1.11 16 20 C -0.12 -1.11 9.69 36.01 0.35 -0.76 16 21 C -0.08 -1.15 6.33 -39.36 -0.25 -1.40 16 22 Cl -0.04 -0.64 25.81 -51.86 -1.34 -1.97 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.06 6.34 -51.93 -0.33 0.73 16 27 H 0.07 1.56 6.29 -51.93 -0.33 1.24 16 28 H 0.08 1.71 6.97 -51.93 -0.36 1.34 16 29 H 0.05 1.04 6.45 -51.93 -0.33 0.71 16 30 H 0.01 0.14 6.02 -51.93 -0.31 -0.18 16 31 H 0.03 0.70 7.91 -51.93 -0.41 0.29 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.05 0.98 6.07 -51.93 -0.32 0.66 16 34 H 0.09 1.66 6.67 -51.93 -0.35 1.31 16 35 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.79 7.03 -51.93 -0.37 0.43 16 39 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -30.29 327.64 -9.25 -39.54 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.58 Total: -1.50 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.78 Total: -11.97 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.46 Total: -45.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.34 Total: -1.97 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.29 -9.25 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235586992.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.161 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds